BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029849
         (689 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI38714.3| unnamed protein product [Vitis vinifera]              144   1e-32
ref|XP_004166512.1| PREDICTED: 28 kDa ribonucleoprotein, chlorop...   133   3e-29
ref|XP_004140529.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   133   3e-29
ref|XP_002515076.1| ribonucleoprotein, chloroplast, putative [Ri...   133   4e-29
ref|NP_001030925.1| RNA recognition motif-containing protein [Ar...   132   8e-29

>emb|CBI38714.3| unnamed protein product [Vitis vinifera]
          Length = 166

 Score =  144 bits (364), Expect = 1e-32
 Identities = 73/120 (60%), Positives = 91/120 (75%), Gaps = 1/120 (0%)
 Frame = -1

Query: 689 DVRGREMRVRLSTDMT-RHKNIQILNSETNKTLIFETPHKIYVGNLAWSVKPDFLREFFT 513
           DV GREMRVR STDM  R +N + LNS   + LIFE+P+K+YVGNLAW++KP+ LR  F+
Sbjct: 47  DVGGREMRVRFSTDMNFRRRNSEALNSAPMRNLIFESPYKLYVGNLAWAIKPEDLRNHFS 106

Query: 512 QFGTVVSVRVLYDRKVGKNRVYAFLSFSSAQEFEAAMTSDGKELLGRKMLVRKALKSSES 333
           QFGTVVS RV++DRK GK+R Y FLSFSSA E EAAM+ +GKE  GR ++V   +K  ES
Sbjct: 107 QFGTVVSARVVHDRKAGKHRAYGFLSFSSAAECEAAMSLNGKEFRGRSLVVSAGMKRVES 166


>ref|XP_004166512.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus]
          Length = 284

 Score =  133 bits (335), Expect = 3e-29
 Identities = 66/120 (55%), Positives = 91/120 (75%), Gaps = 1/120 (0%)
 Frame = -1

Query: 689 DVRGREMRVRLSTDM-TRHKNIQILNSETNKTLIFETPHKIYVGNLAWSVKPDFLREFFT 513
           DV GREMRVR + DM ++ +N+  L+S   K +I+E+P+K+YVGNL+W VKP  LR  F+
Sbjct: 165 DVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFS 224

Query: 512 QFGTVVSVRVLYDRKVGKNRVYAFLSFSSAQEFEAAMTSDGKELLGRKMLVRKALKSSES 333
           +FGTVVS +VL DR+ GK+RVY FLSFSSA E +A+++ DG E   RK++VR+ L+ SES
Sbjct: 225 RFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREGLERSES 284


>ref|XP_004140529.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus]
          Length = 286

 Score =  133 bits (335), Expect = 3e-29
 Identities = 66/120 (55%), Positives = 91/120 (75%), Gaps = 1/120 (0%)
 Frame = -1

Query: 689 DVRGREMRVRLSTDM-TRHKNIQILNSETNKTLIFETPHKIYVGNLAWSVKPDFLREFFT 513
           DV GREMRVR + DM ++ +N+  L+S   K +I+E+P+K+YVGNL+W VKP  LR  F+
Sbjct: 167 DVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFS 226

Query: 512 QFGTVVSVRVLYDRKVGKNRVYAFLSFSSAQEFEAAMTSDGKELLGRKMLVRKALKSSES 333
           +FGTVVS +VL DR+ GK+RVY FLSFSSA E +A+++ DG E   RK++VR+ L+ SES
Sbjct: 227 RFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREGLERSES 286


>ref|XP_002515076.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
           gi|223545556|gb|EEF47060.1| ribonucleoprotein,
           chloroplast, putative [Ricinus communis]
          Length = 281

 Score =  133 bits (334), Expect = 4e-29
 Identities = 65/119 (54%), Positives = 89/119 (74%), Gaps = 1/119 (0%)
 Frame = -1

Query: 689 DVRGREMRVRLSTDMTR-HKNIQILNSETNKTLIFETPHKIYVGNLAWSVKPDFLREFFT 513
           D+ GREMRV+ S DM    +N + L+S   K L +E+P K+YVGNLAW+VKP+ LR+ F+
Sbjct: 163 DIGGREMRVKFSVDMNSGRRNPEPLSSAPTKNLFYESPFKVYVGNLAWTVKPEELRDQFS 222

Query: 512 QFGTVVSVRVLYDRKVGKNRVYAFLSFSSAQEFEAAMTSDGKELLGRKMLVRKALKSSE 336
           +FGTVVS RVLYDRK GKNR Y FLSFSS +E +AA++ +GK+  GR ++VRK ++  +
Sbjct: 223 KFGTVVSARVLYDRKAGKNRAYGFLSFSSTKERDAALSFNGKDFRGRILVVRKGVERED 281


>ref|NP_001030925.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|332189111|gb|AEE27232.1| RNA recognition
           motif-containing protein [Arabidopsis thaliana]
          Length = 294

 Score =  132 bits (331), Expect = 8e-29
 Identities = 63/121 (52%), Positives = 91/121 (75%), Gaps = 2/121 (1%)
 Frame = -1

Query: 689 DVRGREMRVRLSTDMT--RHKNIQILNSETNKTLIFETPHKIYVGNLAWSVKPDFLREFF 516
           +V GREMRVR S DM     +N ++LNS   K L++E+ HK+YVGNL W  +PD LR  F
Sbjct: 174 EVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHF 233

Query: 515 TQFGTVVSVRVLYDRKVGKNRVYAFLSFSSAQEFEAAMTSDGKELLGRKMLVRKALKSSE 336
           ++FGT+VS RVL+DRK G+NRV+AFLSF+S +E +AA++ +G +  GR+++VR+ ++ SE
Sbjct: 234 SKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVREGIEKSE 293

Query: 335 S 333
           S
Sbjct: 294 S 294