BLASTX nr result
ID: Coptis21_contig00029849
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00029849 (689 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI38714.3| unnamed protein product [Vitis vinifera] 144 1e-32 ref|XP_004166512.1| PREDICTED: 28 kDa ribonucleoprotein, chlorop... 133 3e-29 ref|XP_004140529.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop... 133 3e-29 ref|XP_002515076.1| ribonucleoprotein, chloroplast, putative [Ri... 133 4e-29 ref|NP_001030925.1| RNA recognition motif-containing protein [Ar... 132 8e-29 >emb|CBI38714.3| unnamed protein product [Vitis vinifera] Length = 166 Score = 144 bits (364), Expect = 1e-32 Identities = 73/120 (60%), Positives = 91/120 (75%), Gaps = 1/120 (0%) Frame = -1 Query: 689 DVRGREMRVRLSTDMT-RHKNIQILNSETNKTLIFETPHKIYVGNLAWSVKPDFLREFFT 513 DV GREMRVR STDM R +N + LNS + LIFE+P+K+YVGNLAW++KP+ LR F+ Sbjct: 47 DVGGREMRVRFSTDMNFRRRNSEALNSAPMRNLIFESPYKLYVGNLAWAIKPEDLRNHFS 106 Query: 512 QFGTVVSVRVLYDRKVGKNRVYAFLSFSSAQEFEAAMTSDGKELLGRKMLVRKALKSSES 333 QFGTVVS RV++DRK GK+R Y FLSFSSA E EAAM+ +GKE GR ++V +K ES Sbjct: 107 QFGTVVSARVVHDRKAGKHRAYGFLSFSSAAECEAAMSLNGKEFRGRSLVVSAGMKRVES 166 >ref|XP_004166512.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis sativus] Length = 284 Score = 133 bits (335), Expect = 3e-29 Identities = 66/120 (55%), Positives = 91/120 (75%), Gaps = 1/120 (0%) Frame = -1 Query: 689 DVRGREMRVRLSTDM-TRHKNIQILNSETNKTLIFETPHKIYVGNLAWSVKPDFLREFFT 513 DV GREMRVR + DM ++ +N+ L+S K +I+E+P+K+YVGNL+W VKP LR F+ Sbjct: 165 DVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFS 224 Query: 512 QFGTVVSVRVLYDRKVGKNRVYAFLSFSSAQEFEAAMTSDGKELLGRKMLVRKALKSSES 333 +FGTVVS +VL DR+ GK+RVY FLSFSSA E +A+++ DG E RK++VR+ L+ SES Sbjct: 225 RFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREGLERSES 284 >ref|XP_004140529.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis sativus] Length = 286 Score = 133 bits (335), Expect = 3e-29 Identities = 66/120 (55%), Positives = 91/120 (75%), Gaps = 1/120 (0%) Frame = -1 Query: 689 DVRGREMRVRLSTDM-TRHKNIQILNSETNKTLIFETPHKIYVGNLAWSVKPDFLREFFT 513 DV GREMRVR + DM ++ +N+ L+S K +I+E+P+K+YVGNL+W VKP LR F+ Sbjct: 167 DVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFS 226 Query: 512 QFGTVVSVRVLYDRKVGKNRVYAFLSFSSAQEFEAAMTSDGKELLGRKMLVRKALKSSES 333 +FGTVVS +VL DR+ GK+RVY FLSFSSA E +A+++ DG E RK++VR+ L+ SES Sbjct: 227 RFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREGLERSES 286 >ref|XP_002515076.1| ribonucleoprotein, chloroplast, putative [Ricinus communis] gi|223545556|gb|EEF47060.1| ribonucleoprotein, chloroplast, putative [Ricinus communis] Length = 281 Score = 133 bits (334), Expect = 4e-29 Identities = 65/119 (54%), Positives = 89/119 (74%), Gaps = 1/119 (0%) Frame = -1 Query: 689 DVRGREMRVRLSTDMTR-HKNIQILNSETNKTLIFETPHKIYVGNLAWSVKPDFLREFFT 513 D+ GREMRV+ S DM +N + L+S K L +E+P K+YVGNLAW+VKP+ LR+ F+ Sbjct: 163 DIGGREMRVKFSVDMNSGRRNPEPLSSAPTKNLFYESPFKVYVGNLAWTVKPEELRDQFS 222 Query: 512 QFGTVVSVRVLYDRKVGKNRVYAFLSFSSAQEFEAAMTSDGKELLGRKMLVRKALKSSE 336 +FGTVVS RVLYDRK GKNR Y FLSFSS +E +AA++ +GK+ GR ++VRK ++ + Sbjct: 223 KFGTVVSARVLYDRKAGKNRAYGFLSFSSTKERDAALSFNGKDFRGRILVVRKGVERED 281 >ref|NP_001030925.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gi|332189111|gb|AEE27232.1| RNA recognition motif-containing protein [Arabidopsis thaliana] Length = 294 Score = 132 bits (331), Expect = 8e-29 Identities = 63/121 (52%), Positives = 91/121 (75%), Gaps = 2/121 (1%) Frame = -1 Query: 689 DVRGREMRVRLSTDMT--RHKNIQILNSETNKTLIFETPHKIYVGNLAWSVKPDFLREFF 516 +V GREMRVR S DM +N ++LNS K L++E+ HK+YVGNL W +PD LR F Sbjct: 174 EVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHF 233 Query: 515 TQFGTVVSVRVLYDRKVGKNRVYAFLSFSSAQEFEAAMTSDGKELLGRKMLVRKALKSSE 336 ++FGT+VS RVL+DRK G+NRV+AFLSF+S +E +AA++ +G + GR+++VR+ ++ SE Sbjct: 234 SKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVREGIEKSE 293 Query: 335 S 333 S Sbjct: 294 S 294