BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029833
         (456 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003624531.1| Transcription-repair-coupling factor [Medica...   211   2e-63
gb|ABD33152.1| Helicase, C-terminal; Haem peroxidase, plant/fung...   211   2e-63
ref|XP_002303013.1| predicted protein [Populus trichocarpa] gi|2...   217   7e-63
ref|NP_566160.1| putative DEAD/DEAH box helicase [Arabidopsis th...   216   3e-62
ref|XP_002276313.1| PREDICTED: transcription-repair-coupling fac...   216   3e-62

>ref|XP_003624531.1| Transcription-repair-coupling factor [Medicago truncatula]
           gi|355499546|gb|AES80749.1|
           Transcription-repair-coupling factor [Medicago
           truncatula]
          Length = 503

 Score =  211 bits (538), Expect(2) = 2e-63
 Identities = 104/121 (85%), Positives = 111/121 (91%)
 Frame = -3

Query: 454 LMELYLHRLKQKRTPYPKTTAMAEFAAEFPYEPTPDQKQAFIDVEKDLTERETPMDRLIC 275
           LMELYLHRLKQ+R PYP +  +AEFAA+FPYEPTPDQKQAFIDVEKDLTERETPMDRLIC
Sbjct: 55  LMELYLHRLKQRRPPYPMSPVVAEFAAKFPYEPTPDQKQAFIDVEKDLTERETPMDRLIC 114

Query: 274 GDVGFGKTEVALRAIFSVVSTSKQAMVLAPTIVLAKQHFDVVSERFSQYPHIKVGLLSRF 95
           GDVGFGKTEVA+RAI  VV+  KQAMVLAPTIVLAKQHFDV+SERFS YP IKVGLLSRF
Sbjct: 115 GDVGFGKTEVAMRAIHCVVAAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRF 174

Query: 94  Q 92
           Q
Sbjct: 175 Q 175



 Score = 56.2 bits (134), Expect(2) = 2e-63
 Identities = 26/31 (83%), Positives = 29/31 (93%)
 Frame = -1

Query: 93  RSEKEVYLSMIKNGDLDIIVGTHALLGSRVM 1
           RSEKE YL MIKNGDLDIIVGTH+LLG+RV+
Sbjct: 177 RSEKEAYLEMIKNGDLDIIVGTHSLLGNRVV 207


>gb|ABD33152.1| Helicase, C-terminal; Haem peroxidase, plant/fungal/bacterial
           [Medicago truncatula]
          Length = 494

 Score =  211 bits (538), Expect(2) = 2e-63
 Identities = 104/121 (85%), Positives = 111/121 (91%)
 Frame = -3

Query: 454 LMELYLHRLKQKRTPYPKTTAMAEFAAEFPYEPTPDQKQAFIDVEKDLTERETPMDRLIC 275
           LMELYLHRLKQ+R PYP +  +AEFAA+FPYEPTPDQKQAFIDVEKDLTERETPMDRLIC
Sbjct: 71  LMELYLHRLKQRRPPYPMSPVVAEFAAKFPYEPTPDQKQAFIDVEKDLTERETPMDRLIC 130

Query: 274 GDVGFGKTEVALRAIFSVVSTSKQAMVLAPTIVLAKQHFDVVSERFSQYPHIKVGLLSRF 95
           GDVGFGKTEVA+RAI  VV+  KQAMVLAPTIVLAKQHFDV+SERFS YP IKVGLLSRF
Sbjct: 131 GDVGFGKTEVAMRAIHCVVAAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRF 190

Query: 94  Q 92
           Q
Sbjct: 191 Q 191



 Score = 56.2 bits (134), Expect(2) = 2e-63
 Identities = 26/31 (83%), Positives = 29/31 (93%)
 Frame = -1

Query: 93  RSEKEVYLSMIKNGDLDIIVGTHALLGSRVM 1
           RSEKE YL MIKNGDLDIIVGTH+LLG+RV+
Sbjct: 193 RSEKEAYLEMIKNGDLDIIVGTHSLLGNRVV 223


>ref|XP_002303013.1| predicted protein [Populus trichocarpa] gi|222844739|gb|EEE82286.1|
           predicted protein [Populus trichocarpa]
          Length = 939

 Score =  217 bits (552), Expect(2) = 7e-63
 Identities = 105/121 (86%), Positives = 113/121 (93%)
 Frame = -3

Query: 454 LMELYLHRLKQKRTPYPKTTAMAEFAAEFPYEPTPDQKQAFIDVEKDLTERETPMDRLIC 275
           LMELYLHRLKQ+R PYPKT AM +F+A+FPYEPTPDQKQAFIDV +DLTERETPMDRLIC
Sbjct: 234 LMELYLHRLKQRRPPYPKTPAMVDFSAQFPYEPTPDQKQAFIDVMRDLTERETPMDRLIC 293

Query: 274 GDVGFGKTEVALRAIFSVVSTSKQAMVLAPTIVLAKQHFDVVSERFSQYPHIKVGLLSRF 95
           GDVGFGKTEVALRAIF VVS  KQAMVLAPTIVLA+QHFDV+SERFS+YPHIKV LLSRF
Sbjct: 294 GDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLARQHFDVISERFSKYPHIKVALLSRF 353

Query: 94  Q 92
           Q
Sbjct: 354 Q 354



 Score = 48.9 bits (115), Expect(2) = 7e-63
 Identities = 22/31 (70%), Positives = 28/31 (90%)
 Frame = -1

Query: 93  RSEKEVYLSMIKNGDLDIIVGTHALLGSRVM 1
           ++EKE+YL M K+G LDIIVGTH+LLGSRV+
Sbjct: 362 KAEKEMYLEMTKHGHLDIIVGTHSLLGSRVV 392


>ref|NP_566160.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana]
           gi|332640233|gb|AEE73754.1| putative DEAD/DEAH box
           helicase [Arabidopsis thaliana]
          Length = 823

 Score =  216 bits (551), Expect(2) = 3e-62
 Identities = 106/121 (87%), Positives = 112/121 (92%)
 Frame = -3

Query: 454 LMELYLHRLKQKRTPYPKTTAMAEFAAEFPYEPTPDQKQAFIDVEKDLTERETPMDRLIC 275
           LMELYLHRL+QKR PYPK   MA+FAA+FPY  TPDQKQAF+DVEKDLTERETPMDRLIC
Sbjct: 238 LMELYLHRLRQKRYPYPKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLIC 297

Query: 274 GDVGFGKTEVALRAIFSVVSTSKQAMVLAPTIVLAKQHFDVVSERFSQYPHIKVGLLSRF 95
           GDVGFGKTEVALRAIF VVST KQAMVLAPTIVLAKQH+DV+SERFS YPHIKVGLLSRF
Sbjct: 298 GDVGFGKTEVALRAIFCVVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRF 357

Query: 94  Q 92
           Q
Sbjct: 358 Q 358



 Score = 47.4 bits (111), Expect(2) = 3e-62
 Identities = 22/31 (70%), Positives = 27/31 (87%)
 Frame = -1

Query: 93  RSEKEVYLSMIKNGDLDIIVGTHALLGSRVM 1
           ++EKE YL MIK G L+IIVGTH+LLGSRV+
Sbjct: 360 KAEKEEYLEMIKTGHLNIIVGTHSLLGSRVV 390


>ref|XP_002276313.1| PREDICTED: transcription-repair-coupling factor-like [Vitis
           vinifera]
          Length = 823

 Score =  216 bits (549), Expect(2) = 3e-62
 Identities = 106/121 (87%), Positives = 113/121 (93%)
 Frame = -3

Query: 454 LMELYLHRLKQKRTPYPKTTAMAEFAAEFPYEPTPDQKQAFIDVEKDLTERETPMDRLIC 275
           LMELYLHRLKQKR PYPK+  MAEF A+F YEPTPDQKQAFIDVE+DLTERETPMDRLIC
Sbjct: 238 LMELYLHRLKQKRPPYPKSPGMAEFEAQFSYEPTPDQKQAFIDVEEDLTERETPMDRLIC 297

Query: 274 GDVGFGKTEVALRAIFSVVSTSKQAMVLAPTIVLAKQHFDVVSERFSQYPHIKVGLLSRF 95
           GDVGFGKTEVALRAIF VVS  KQAMVLAPTIVLAKQHFDV++ERFS+YP+IKVGLLSRF
Sbjct: 298 GDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVITERFSKYPNIKVGLLSRF 357

Query: 94  Q 92
           Q
Sbjct: 358 Q 358



 Score = 48.1 bits (113), Expect(2) = 3e-62
 Identities = 22/30 (73%), Positives = 28/30 (93%)
 Frame = -1

Query: 90  SEKEVYLSMIKNGDLDIIVGTHALLGSRVM 1
           +EKE +L MIK+GDLDIIVGTH+LLG+RV+
Sbjct: 361 AEKEKHLRMIKHGDLDIIVGTHSLLGNRVV 390