BLASTX nr result
ID: Coptis21_contig00029833
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00029833 (456 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003624531.1| Transcription-repair-coupling factor [Medica... 211 2e-63 gb|ABD33152.1| Helicase, C-terminal; Haem peroxidase, plant/fung... 211 2e-63 ref|XP_002303013.1| predicted protein [Populus trichocarpa] gi|2... 217 7e-63 ref|NP_566160.1| putative DEAD/DEAH box helicase [Arabidopsis th... 216 3e-62 ref|XP_002276313.1| PREDICTED: transcription-repair-coupling fac... 216 3e-62 >ref|XP_003624531.1| Transcription-repair-coupling factor [Medicago truncatula] gi|355499546|gb|AES80749.1| Transcription-repair-coupling factor [Medicago truncatula] Length = 503 Score = 211 bits (538), Expect(2) = 2e-63 Identities = 104/121 (85%), Positives = 111/121 (91%) Frame = -3 Query: 454 LMELYLHRLKQKRTPYPKTTAMAEFAAEFPYEPTPDQKQAFIDVEKDLTERETPMDRLIC 275 LMELYLHRLKQ+R PYP + +AEFAA+FPYEPTPDQKQAFIDVEKDLTERETPMDRLIC Sbjct: 55 LMELYLHRLKQRRPPYPMSPVVAEFAAKFPYEPTPDQKQAFIDVEKDLTERETPMDRLIC 114 Query: 274 GDVGFGKTEVALRAIFSVVSTSKQAMVLAPTIVLAKQHFDVVSERFSQYPHIKVGLLSRF 95 GDVGFGKTEVA+RAI VV+ KQAMVLAPTIVLAKQHFDV+SERFS YP IKVGLLSRF Sbjct: 115 GDVGFGKTEVAMRAIHCVVAAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRF 174 Query: 94 Q 92 Q Sbjct: 175 Q 175 Score = 56.2 bits (134), Expect(2) = 2e-63 Identities = 26/31 (83%), Positives = 29/31 (93%) Frame = -1 Query: 93 RSEKEVYLSMIKNGDLDIIVGTHALLGSRVM 1 RSEKE YL MIKNGDLDIIVGTH+LLG+RV+ Sbjct: 177 RSEKEAYLEMIKNGDLDIIVGTHSLLGNRVV 207 >gb|ABD33152.1| Helicase, C-terminal; Haem peroxidase, plant/fungal/bacterial [Medicago truncatula] Length = 494 Score = 211 bits (538), Expect(2) = 2e-63 Identities = 104/121 (85%), Positives = 111/121 (91%) Frame = -3 Query: 454 LMELYLHRLKQKRTPYPKTTAMAEFAAEFPYEPTPDQKQAFIDVEKDLTERETPMDRLIC 275 LMELYLHRLKQ+R PYP + +AEFAA+FPYEPTPDQKQAFIDVEKDLTERETPMDRLIC Sbjct: 71 LMELYLHRLKQRRPPYPMSPVVAEFAAKFPYEPTPDQKQAFIDVEKDLTERETPMDRLIC 130 Query: 274 GDVGFGKTEVALRAIFSVVSTSKQAMVLAPTIVLAKQHFDVVSERFSQYPHIKVGLLSRF 95 GDVGFGKTEVA+RAI VV+ KQAMVLAPTIVLAKQHFDV+SERFS YP IKVGLLSRF Sbjct: 131 GDVGFGKTEVAMRAIHCVVAAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRF 190 Query: 94 Q 92 Q Sbjct: 191 Q 191 Score = 56.2 bits (134), Expect(2) = 2e-63 Identities = 26/31 (83%), Positives = 29/31 (93%) Frame = -1 Query: 93 RSEKEVYLSMIKNGDLDIIVGTHALLGSRVM 1 RSEKE YL MIKNGDLDIIVGTH+LLG+RV+ Sbjct: 193 RSEKEAYLEMIKNGDLDIIVGTHSLLGNRVV 223 >ref|XP_002303013.1| predicted protein [Populus trichocarpa] gi|222844739|gb|EEE82286.1| predicted protein [Populus trichocarpa] Length = 939 Score = 217 bits (552), Expect(2) = 7e-63 Identities = 105/121 (86%), Positives = 113/121 (93%) Frame = -3 Query: 454 LMELYLHRLKQKRTPYPKTTAMAEFAAEFPYEPTPDQKQAFIDVEKDLTERETPMDRLIC 275 LMELYLHRLKQ+R PYPKT AM +F+A+FPYEPTPDQKQAFIDV +DLTERETPMDRLIC Sbjct: 234 LMELYLHRLKQRRPPYPKTPAMVDFSAQFPYEPTPDQKQAFIDVMRDLTERETPMDRLIC 293 Query: 274 GDVGFGKTEVALRAIFSVVSTSKQAMVLAPTIVLAKQHFDVVSERFSQYPHIKVGLLSRF 95 GDVGFGKTEVALRAIF VVS KQAMVLAPTIVLA+QHFDV+SERFS+YPHIKV LLSRF Sbjct: 294 GDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLARQHFDVISERFSKYPHIKVALLSRF 353 Query: 94 Q 92 Q Sbjct: 354 Q 354 Score = 48.9 bits (115), Expect(2) = 7e-63 Identities = 22/31 (70%), Positives = 28/31 (90%) Frame = -1 Query: 93 RSEKEVYLSMIKNGDLDIIVGTHALLGSRVM 1 ++EKE+YL M K+G LDIIVGTH+LLGSRV+ Sbjct: 362 KAEKEMYLEMTKHGHLDIIVGTHSLLGSRVV 392 >ref|NP_566160.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana] gi|332640233|gb|AEE73754.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana] Length = 823 Score = 216 bits (551), Expect(2) = 3e-62 Identities = 106/121 (87%), Positives = 112/121 (92%) Frame = -3 Query: 454 LMELYLHRLKQKRTPYPKTTAMAEFAAEFPYEPTPDQKQAFIDVEKDLTERETPMDRLIC 275 LMELYLHRL+QKR PYPK MA+FAA+FPY TPDQKQAF+DVEKDLTERETPMDRLIC Sbjct: 238 LMELYLHRLRQKRYPYPKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLIC 297 Query: 274 GDVGFGKTEVALRAIFSVVSTSKQAMVLAPTIVLAKQHFDVVSERFSQYPHIKVGLLSRF 95 GDVGFGKTEVALRAIF VVST KQAMVLAPTIVLAKQH+DV+SERFS YPHIKVGLLSRF Sbjct: 298 GDVGFGKTEVALRAIFCVVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRF 357 Query: 94 Q 92 Q Sbjct: 358 Q 358 Score = 47.4 bits (111), Expect(2) = 3e-62 Identities = 22/31 (70%), Positives = 27/31 (87%) Frame = -1 Query: 93 RSEKEVYLSMIKNGDLDIIVGTHALLGSRVM 1 ++EKE YL MIK G L+IIVGTH+LLGSRV+ Sbjct: 360 KAEKEEYLEMIKTGHLNIIVGTHSLLGSRVV 390 >ref|XP_002276313.1| PREDICTED: transcription-repair-coupling factor-like [Vitis vinifera] Length = 823 Score = 216 bits (549), Expect(2) = 3e-62 Identities = 106/121 (87%), Positives = 113/121 (93%) Frame = -3 Query: 454 LMELYLHRLKQKRTPYPKTTAMAEFAAEFPYEPTPDQKQAFIDVEKDLTERETPMDRLIC 275 LMELYLHRLKQKR PYPK+ MAEF A+F YEPTPDQKQAFIDVE+DLTERETPMDRLIC Sbjct: 238 LMELYLHRLKQKRPPYPKSPGMAEFEAQFSYEPTPDQKQAFIDVEEDLTERETPMDRLIC 297 Query: 274 GDVGFGKTEVALRAIFSVVSTSKQAMVLAPTIVLAKQHFDVVSERFSQYPHIKVGLLSRF 95 GDVGFGKTEVALRAIF VVS KQAMVLAPTIVLAKQHFDV++ERFS+YP+IKVGLLSRF Sbjct: 298 GDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVITERFSKYPNIKVGLLSRF 357 Query: 94 Q 92 Q Sbjct: 358 Q 358 Score = 48.1 bits (113), Expect(2) = 3e-62 Identities = 22/30 (73%), Positives = 28/30 (93%) Frame = -1 Query: 90 SEKEVYLSMIKNGDLDIIVGTHALLGSRVM 1 +EKE +L MIK+GDLDIIVGTH+LLG+RV+ Sbjct: 361 AEKEKHLRMIKHGDLDIIVGTHSLLGNRVV 390