BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029794
         (309 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containi...   105   5e-21
emb|CBI17752.3| unnamed protein product [Vitis vinifera]              105   5e-21
ref|XP_003598903.1| Pentatricopeptide repeat-containing protein ...    82   6e-14
ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containi...    77   1e-12
ref|XP_002304774.1| predicted protein [Populus trichocarpa] gi|2...    75   7e-12

>ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20740-like [Vitis vinifera]
          Length = 1294

 Score =  105 bits (261), Expect = 5e-21
 Identities = 52/99 (52%), Positives = 65/99 (65%), Gaps = 2/99 (2%)
 Frame = -3

Query: 292 NKLYFYYGHRKPSQNRPTVQGGLFSNRKTLXXXXXXXXXXXXXXXXXXXFTKWDPNSVQS 113
           +K YF+YGHRKPSQNRPTV GGLFSNR TL                      WDP+S ++
Sbjct: 550 HKFYFFYGHRKPSQNRPTVHGGLFSNRTTL----NPKPPTLQNPTTHFNLQNWDPDSPKA 605

Query: 112 TI--PTKTQAEKYFFIAQSLSPLARYICDSFRKHKHWCP 2
               P+KT  E++F IA++LSP+ARYICDSFRKH++W P
Sbjct: 606 LAIPPSKTPCERFFDIAKNLSPIARYICDSFRKHRNWGP 644


>emb|CBI17752.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  105 bits (261), Expect = 5e-21
 Identities = 52/99 (52%), Positives = 65/99 (65%), Gaps = 2/99 (2%)
 Frame = -3

Query: 292 NKLYFYYGHRKPSQNRPTVQGGLFSNRKTLXXXXXXXXXXXXXXXXXXXFTKWDPNSVQS 113
           +K YF+YGHRKPSQNRPTV GGLFSNR TL                      WDP+S ++
Sbjct: 11  HKFYFFYGHRKPSQNRPTVHGGLFSNRTTL----NPKPPTLQNPTTHFNLQNWDPDSPKA 66

Query: 112 TI--PTKTQAEKYFFIAQSLSPLARYICDSFRKHKHWCP 2
               P+KT  E++F IA++LSP+ARYICDSFRKH++W P
Sbjct: 67  LAIPPSKTPCERFFDIAKNLSPIARYICDSFRKHRNWGP 105


>ref|XP_003598903.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355487951|gb|AES69154.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 767

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 48/105 (45%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
 Frame = -3

Query: 301 TTTNKLYFYYGHRKPSQNRPTVQGGLFSNRKTLXXXXXXXXXXXXXXXXXXXFTKWDPNS 122
           T  NK YF+YGHRKPSQNRPTV+GGLFSNRKTL                     KWDP+ 
Sbjct: 7   TPPNKFYFFYGHRKPSQNRPTVRGGLFSNRKTL----TPPKPKSTKPTNSFQIQKWDPHF 62

Query: 121 V-QSTIPTKTQA---EKYFFIAQSLSPLARYICDSFRK-HKHWCP 2
           + Q   P+ + +   E  F  +  LSP+AR+I D+FRK + +W P
Sbjct: 63  LSQPNSPSPSPSPSPEATFSASLRLSPIARFILDAFRKNNNNWGP 107


>ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20740-like [Glycine max]
          Length = 733

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 43/100 (43%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
 Frame = -3

Query: 295 TNKLYFYYGHRKPSQNRPTVQGGLFSNRKTLXXXXXXXXXXXXXXXXXXXFTKWDPNSVQ 116
           TNK YF+YGHR PSQNRPTV+GGLFSNR+TL                      WDP+ + 
Sbjct: 24  TNKFYFFYGHRNPSQNRPTVRGGLFSNRQTL----NPNPSQPKPTTKPFNIKNWDPHFLS 79

Query: 115 STIPTKTQAEKYFFIAQ-SLSPLARYICDSFRKHKH-WCP 2
           +  P    +      A   LSP+AR+I D+FR++ + WCP
Sbjct: 80  N--PNSNPSPSTLSSASLRLSPIARFIVDAFRRNDNKWCP 117


>ref|XP_002304774.1| predicted protein [Populus trichocarpa] gi|222842206|gb|EEE79753.1|
           predicted protein [Populus trichocarpa]
          Length = 728

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
 Frame = -3

Query: 289 KLYFYYGHRKPSQNRPTVQGGLFSNRKTLXXXXXXXXXXXXXXXXXXXFTKWD-----PN 125
           K YF+YGHRKPSQNRP V+GGLF+NR+T+                     KWD     P+
Sbjct: 15  KPYFFYGHRKPSQNRPVVRGGLFTNRQTVKPQPPKNPITPFKPFDLH---KWDPQQNLPH 71

Query: 124 SVQSTIPTKTQAEKYFFIAQSLSPLARYICDSFRKHKH-WCP 2
             Q + P   ++     ++Q LSP+AR+I D+FRK+++ W P
Sbjct: 72  QPQPSKPQSPRSRHSLALSQRLSPIARFILDAFRKNRNQWGP 113