BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029746
         (308 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA73803.1| reverse transcriptase [Allium cepa]                   122   3e-26
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   112   4e-23
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas...   110   2e-22
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta...   109   2e-22
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   108   4e-22

>emb|CAA73803.1| reverse transcriptase [Allium cepa]
          Length = 137

 Score =  122 bits (306), Expect = 3e-26
 Identities = 53/102 (51%), Positives = 76/102 (74%)
 Frame = +3

Query: 3   CTILYRCITKVITNRLKPIIPNLVSSNQTAFIPGRSIQDNLLLSHELIRSYERKRLSPRC 182
           C  +Y+CI+KV+ +RLK ++P LVS NQ A++ GR+I D++LLSHELI+ Y+RK  +PR 
Sbjct: 9   CNTIYKCISKVLASRLKHVLPTLVSPNQAAYLSGRNILDHVLLSHELIKGYKRKSATPRA 68

Query: 183 TIKLDIQKAFDMVSWETIQHMLGKLNFPPRMRSWIELCIMNP 308
            +KLDI KAFD + W +I  +LG +NFPP + +WI  CI +P
Sbjct: 69  MLKLDIMKAFDTLQWNSIVRILGYMNFPPHIIAWIYECISSP 110


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  112 bits (279), Expect = 4e-23
 Identities = 49/99 (49%), Positives = 71/99 (71%)
 Frame = +3

Query: 3   CTILYRCITKVITNRLKPIIPNLVSSNQTAFIPGRSIQDNLLLSHELIRSYERKRLSPRC 182
           CT++Y+ I+K++TNR+K II  +V+  Q+ FIPGR I DN+LL+ ELIR Y RK +SPRC
Sbjct: 520 CTVIYKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRC 579

Query: 183 TIKLDIQKAFDMVSWETIQHMLGKLNFPPRMRSWIELCI 299
            +K+DI+KA+D V W  ++ +L +  FP R   WI  C+
Sbjct: 580 IMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECV 618


>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 402

 Score =  110 bits (274), Expect = 2e-22
 Identities = 43/99 (43%), Positives = 77/99 (77%)
 Frame = +3

Query: 3   CTILYRCITKVITNRLKPIIPNLVSSNQTAFIPGRSIQDNLLLSHELIRSYERKRLSPRC 182
           C+++Y+ I+K++T+R++ ++ ++VS NQ+AF+ GR I DN++LSHEL++SY RK +SPRC
Sbjct: 203 CSVIYKIISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNIILSHELVKSYSRKGISPRC 262

Query: 183 TIKLDIQKAFDMVSWETIQHMLGKLNFPPRMRSWIELCI 299
            +K+D+QKA++ V W  I+H++ +L F  +  +W+  C+
Sbjct: 263 MVKIDLQKAYNSVEWPFIKHLMLELGFSYKFVNWVMGCL 301


>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1449

 Score =  109 bits (273), Expect = 2e-22
 Identities = 44/99 (44%), Positives = 70/99 (70%)
 Frame = +3

Query: 3    CTILYRCITKVITNRLKPIIPNLVSSNQTAFIPGRSIQDNLLLSHELIRSYERKRLSPRC 182
            C ++Y+ I+K+I NRLK ++PN ++ NQ+AF+  R + +NLLL+ EL++ Y +  +S RC
Sbjct: 950  CNVIYKVISKIIANRLKHVLPNFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISGRC 1009

Query: 183  TIKLDIQKAFDMVSWETIQHMLGKLNFPPRMRSWIELCI 299
             IK+DI KAFD V W  ++++L  L+FPP    W+ LC+
Sbjct: 1010 AIKIDISKAFDSVQWSFLKNVLSALDFPPEFVHWVMLCV 1048


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  108 bits (270), Expect = 4e-22
 Identities = 44/99 (44%), Positives = 71/99 (71%)
 Frame = +3

Query: 3    CTILYRCITKVITNRLKPIIPNLVSSNQTAFIPGRSIQDNLLLSHELIRSYERKRLSPRC 182
            C +LY+ I+K++ NRLK ++P+ +  NQ+AF+  R + +N+LL+ EL++ Y ++ ++PRC
Sbjct: 832  CNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVTPRC 891

Query: 183  TIKLDIQKAFDMVSWETIQHMLGKLNFPPRMRSWIELCI 299
             +K+DI KAFD V W+ + + L  LNFP   R WI+LCI
Sbjct: 892  AMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCI 930