BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029741
         (360 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004166115.1| PREDICTED: DNA repair protein RAD50-like, pa...   128   5e-28
ref|XP_004133980.1| PREDICTED: DNA repair protein RAD50-like [Cu...   128   5e-28
ref|XP_002266665.2| PREDICTED: LOW QUALITY PROTEIN: DNA repair p...   124   1e-26
ref|XP_002879357.1| hypothetical protein ARALYDRAFT_344958 [Arab...   121   7e-26
ref|NP_565733.1| DNA repair protein RAD50 [Arabidopsis thaliana]...   120   9e-26

>ref|XP_004166115.1| PREDICTED: DNA repair protein RAD50-like, partial [Cucumis sativus]
          Length = 1088

 Score =  128 bits (321), Expect = 5e-28
 Identities = 62/119 (52%), Positives = 87/119 (73%)
 Frame = +3

Query: 3   EMKDIDIKSSSLRGAIIQYSRDIGKLQQEAEAHMTLRRDCDSTIEKLFAKHNLGHLPSTP 182
           EM D++ KSS L+ AI +Y  +I KLQ EAE HM+L+ + DSTIE+LFA+HNLG +P+TP
Sbjct: 101 EMNDLETKSSFLKQAINEYIWEISKLQTEAEVHMSLKNERDSTIEELFARHNLGSVPNTP 160

Query: 183 FSNDVAFNLINRISTRMNDLEQDLLDKKSSNKMEVDAVWNSYMKACERCSKLEGQKSAK 359
           FS++VA NL NRI  R+ DL++D+ DK+ SN +E+   W+ YM A +R   ++ QK AK
Sbjct: 161 FSDEVASNLTNRIKLRLVDLDKDMQDKRLSNDVELKTAWDCYMDANDRWKNIDAQKHAK 219


>ref|XP_004133980.1| PREDICTED: DNA repair protein RAD50-like [Cucumis sativus]
          Length = 1316

 Score =  128 bits (321), Expect = 5e-28
 Identities = 62/119 (52%), Positives = 87/119 (73%)
 Frame = +3

Query: 3   EMKDIDIKSSSLRGAIIQYSRDIGKLQQEAEAHMTLRRDCDSTIEKLFAKHNLGHLPSTP 182
           EM D++ KSS L+ AI +Y  +I KLQ EAE HM+L+ + DSTIE+LFA+HNLG +P+TP
Sbjct: 329 EMNDLETKSSFLKQAINEYIWEISKLQTEAEVHMSLKNERDSTIEELFARHNLGSVPNTP 388

Query: 183 FSNDVAFNLINRISTRMNDLEQDLLDKKSSNKMEVDAVWNSYMKACERCSKLEGQKSAK 359
           FS++VA NL NRI  R+ DL++D+ DK+ SN +E+   W+ YM A +R   ++ QK AK
Sbjct: 389 FSDEVASNLTNRIKLRLVDLDKDMQDKRLSNDVELKTAWDCYMDANDRWKNIDAQKHAK 447


>ref|XP_002266665.2| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein RAD50-like
           [Vitis vinifera]
          Length = 1316

 Score =  124 bits (310), Expect = 1e-26
 Identities = 62/119 (52%), Positives = 80/119 (67%)
 Frame = +3

Query: 3   EMKDIDIKSSSLRGAIIQYSRDIGKLQQEAEAHMTLRRDCDSTIEKLFAKHNLGHLPSTP 182
           EM D + K S L+  I  Y  +I KLQ EAE H +L+ + DSTI+KLFA++NLG LPS P
Sbjct: 329 EMDDTETKGSFLKQTINDYIWEISKLQTEAEVHSSLKNERDSTIQKLFARNNLGSLPSVP 388

Query: 183 FSNDVAFNLINRISTRMNDLEQDLLDKKSSNKMEVDAVWNSYMKACERCSKLEGQKSAK 359
           FSN++A N  NRI TR+ DLE+DL DKK S +ME+   W+ YM A +    +E QK AK
Sbjct: 389 FSNEIALNFTNRIKTRLMDLEKDLQDKKKSIEMELKVAWDRYMDANDHWKDIEAQKQAK 447


>ref|XP_002879357.1| hypothetical protein ARALYDRAFT_344958 [Arabidopsis lyrata subsp.
           lyrata] gi|297325196|gb|EFH55616.1| hypothetical protein
           ARALYDRAFT_344958 [Arabidopsis lyrata subsp. lyrata]
          Length = 1234

 Score =  121 bits (303), Expect = 7e-26
 Identities = 60/119 (50%), Positives = 77/119 (64%)
 Frame = +3

Query: 3   EMKDIDIKSSSLRGAIIQYSRDIGKLQQEAEAHMTLRRDCDSTIEKLFAKHNLGHLPSTP 182
           EM D      SL  A   Y  +I KLQ EAEAHM L+ + DSTI+K+F+ HNLG++PSTP
Sbjct: 329 EMDDTATTIYSLHNAKTNYMLEISKLQTEAEAHMLLKNERDSTIQKIFSHHNLGNVPSTP 388

Query: 183 FSNDVAFNLINRISTRMNDLEQDLLDKKSSNKMEVDAVWNSYMKACERCSKLEGQKSAK 359
           F  +V  NL NRI +R+ +LE DLLDKK SN+  +   W+ YM A +R   +E QK AK
Sbjct: 389 FGTEVVLNLTNRIKSRLGELEMDLLDKKKSNETALSTAWDCYMDANDRWKSIEAQKRAK 447


>ref|NP_565733.1| DNA repair protein RAD50 [Arabidopsis thaliana]
           gi|57013013|sp|Q9SL02.2|RAD50_ARATH RecName: Full=DNA
           repair protein RAD50; Short=AtRAD50
           gi|7110148|gb|AAF36810.1|AF168748_1 DNA
           repair-recombination protein [Arabidopsis thaliana]
           gi|20197622|gb|AAD15407.2| putative RAD50 DNA repair
           protein [Arabidopsis thaliana]
           gi|22654997|gb|AAM98090.1| At2g31970/F22D22.28
           [Arabidopsis thaliana] gi|29028758|gb|AAO64758.1|
           At2g31970/F22D22.28 [Arabidopsis thaliana]
           gi|330253520|gb|AEC08614.1| DNA repair protein RAD50
           [Arabidopsis thaliana]
          Length = 1316

 Score =  120 bits (302), Expect = 9e-26
 Identities = 60/119 (50%), Positives = 78/119 (65%)
 Frame = +3

Query: 3   EMKDIDIKSSSLRGAIIQYSRDIGKLQQEAEAHMTLRRDCDSTIEKLFAKHNLGHLPSTP 182
           EM D +   SSL  A   Y  +I KLQ EAEAHM L+ + DSTI+ +F  +NLG++PSTP
Sbjct: 329 EMVDTETTISSLHNAKTNYMLEISKLQTEAEAHMLLKNERDSTIQNIFFHYNLGNVPSTP 388

Query: 183 FSNDVAFNLINRISTRMNDLEQDLLDKKSSNKMEVDAVWNSYMKACERCSKLEGQKSAK 359
           FS +V  NL NRI +R+ +LE DLLDKK SN+  +   W+ YM A +R   +E QK AK
Sbjct: 389 FSTEVVLNLTNRIKSRLGELEMDLLDKKKSNETALSTAWDCYMDANDRWKSIEAQKRAK 447