BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029739
         (729 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002520925.1| Photosystem II stability/assembly factor HCF...   259   5e-67
ref|XP_002278958.1| PREDICTED: photosystem II stability/assembly...   258   7e-67
ref|XP_002310654.1| predicted protein [Populus trichocarpa] gi|2...   252   6e-65
ref|XP_004135957.1| PREDICTED: photosystem II stability/assembly...   251   8e-65
ref|XP_002439075.1| hypothetical protein SORBIDRAFT_10g031120 [S...   249   5e-64

>ref|XP_002520925.1| Photosystem II stability/assembly factor HCF136, chloroplast
           precursor, putative [Ricinus communis]
           gi|223539891|gb|EEF41470.1| Photosystem II
           stability/assembly factor HCF136, chloroplast precursor,
           putative [Ricinus communis]
          Length = 397

 Score =  259 bits (661), Expect = 5e-67
 Identities = 126/145 (86%), Positives = 130/145 (89%)
 Frame = -1

Query: 729 SYVAVSSRGNFYLTWEPGQPYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTG 550
           +YVAVSSRGNFYLTWEPGQP+WQPHNRAVARRIQNMGWRAD             LSKGTG
Sbjct: 253 NYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTG 312

Query: 549 ISEDFEEVPVQSRGFGILDVGYRSKDEAWAAGGSGILLRTTNGGKTWSRDKAADDIAANL 370
           ISEDFEE+ VQSRGFGILDVGYRSKDEAWAAGGSGILLRTTNGGKTW+RDKAAD IAANL
Sbjct: 313 ISEDFEEISVQSRGFGILDVGYRSKDEAWAAGGSGILLRTTNGGKTWTRDKAADSIAANL 372

Query: 369 YSVKFINDSKGFVLGNDGVLLRYLG 295
           YSVKFINDSKGFVLGNDGVLLRYLG
Sbjct: 373 YSVKFINDSKGFVLGNDGVLLRYLG 397


>ref|XP_002278958.1| PREDICTED: photosystem II stability/assembly factor HCF136,
           chloroplastic [Vitis vinifera]
           gi|297737938|emb|CBI27139.3| unnamed protein product
           [Vitis vinifera]
          Length = 404

 Score =  258 bits (660), Expect = 7e-67
 Identities = 124/145 (85%), Positives = 132/145 (91%)
 Frame = -1

Query: 729 SYVAVSSRGNFYLTWEPGQPYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTG 550
           SYVAVSSRGNFYLTWEPGQPYWQPHNRAVARRIQNMGWRAD             LSKGTG
Sbjct: 260 SYVAVSSRGNFYLTWEPGQPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTG 319

Query: 549 ISEDFEEVPVQSRGFGILDVGYRSKDEAWAAGGSGILLRTTNGGKTWSRDKAADDIAANL 370
           ISEDFEE+PVQSRGFGILDVGYRSK+EAWAAGGSG+LLRTTNGGKTW+RDKAAD+IAANL
Sbjct: 320 ISEDFEEIPVQSRGFGILDVGYRSKEEAWAAGGSGVLLRTTNGGKTWTRDKAADNIAANL 379

Query: 369 YSVKFINDSKGFVLGNDGVLLRYLG 295
           YSVKFI+D+KGFVLGNDGVLLR+LG
Sbjct: 380 YSVKFIDDTKGFVLGNDGVLLRFLG 404


>ref|XP_002310654.1| predicted protein [Populus trichocarpa] gi|222853557|gb|EEE91104.1|
           predicted protein [Populus trichocarpa]
          Length = 394

 Score =  252 bits (643), Expect = 6e-65
 Identities = 120/145 (82%), Positives = 130/145 (89%)
 Frame = -1

Query: 729 SYVAVSSRGNFYLTWEPGQPYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTG 550
           +YVAVSSRGNFYLTWEPGQ +WQPHNRA+ARRIQNMGWRAD             LSKGTG
Sbjct: 250 NYVAVSSRGNFYLTWEPGQAFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLYLSKGTG 309

Query: 549 ISEDFEEVPVQSRGFGILDVGYRSKDEAWAAGGSGILLRTTNGGKTWSRDKAADDIAANL 370
           ISE+FEE+PVQSRGFGILDVGYRSK+EAWAAGGSG+LLRTTNGGKTW+RDKAAD+IAANL
Sbjct: 310 ISEEFEEIPVQSRGFGILDVGYRSKEEAWAAGGSGVLLRTTNGGKTWTRDKAADNIAANL 369

Query: 369 YSVKFINDSKGFVLGNDGVLLRYLG 295
           YSVKFI+D KGFVLGNDGVLLRYLG
Sbjct: 370 YSVKFIDDKKGFVLGNDGVLLRYLG 394


>ref|XP_004135957.1| PREDICTED: photosystem II stability/assembly factor HCF136,
           chloroplastic-like [Cucumis sativus]
           gi|449488796|ref|XP_004158174.1| PREDICTED: photosystem
           II stability/assembly factor HCF136, chloroplastic-like
           [Cucumis sativus]
          Length = 406

 Score =  251 bits (642), Expect = 8e-65
 Identities = 119/144 (82%), Positives = 130/144 (90%)
 Frame = -1

Query: 726 YVAVSSRGNFYLTWEPGQPYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTGI 547
           YVAVSSRGNFYLTWEPGQP+WQPHNRA+ARRIQNMGWRAD             LSKGTGI
Sbjct: 263 YVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI 322

Query: 546 SEDFEEVPVQSRGFGILDVGYRSKDEAWAAGGSGILLRTTNGGKTWSRDKAADDIAANLY 367
           SE+FEEVPVQSRGFGILDVGYRSK+EAWAAGGSG+LL+TTNGG++W+RDKAAD+IAANLY
Sbjct: 323 SEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKTTNGGRSWTRDKAADNIAANLY 382

Query: 366 SVKFINDSKGFVLGNDGVLLRYLG 295
           SVKFIND KGFVLGNDGVLL+YLG
Sbjct: 383 SVKFINDKKGFVLGNDGVLLQYLG 406


>ref|XP_002439075.1| hypothetical protein SORBIDRAFT_10g031120 [Sorghum bicolor]
           gi|241917298|gb|EER90442.1| hypothetical protein
           SORBIDRAFT_10g031120 [Sorghum bicolor]
          Length = 397

 Score =  249 bits (635), Expect = 5e-64
 Identities = 120/144 (83%), Positives = 128/144 (88%)
 Frame = -1

Query: 726 YVAVSSRGNFYLTWEPGQPYWQPHNRAVARRIQNMGWRADXXXXXXXXXXXXXLSKGTGI 547
           YVAVSSRGNFYLTWEPGQP+WQPHNRAVARRIQNMGWRAD             LSKGTGI
Sbjct: 254 YVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGI 313

Query: 546 SEDFEEVPVQSRGFGILDVGYRSKDEAWAAGGSGILLRTTNGGKTWSRDKAADDIAANLY 367
           SEDFEEV VQSRGFGILDVGYRS++EAWAAGGSG+LL+TTNGGK W RDKAAD+IAANLY
Sbjct: 314 SEDFEEVQVQSRGFGILDVGYRSQEEAWAAGGSGVLLKTTNGGKNWVRDKAADNIAANLY 373

Query: 366 SVKFINDSKGFVLGNDGVLLRYLG 295
           SVKF++DSKGFVLGNDGVLLRYLG
Sbjct: 374 SVKFLDDSKGFVLGNDGVLLRYLG 397