BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029726
         (339 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002520932.1| pentatricopeptide repeat-containing protein,...    75   1e-16
sp|Q9SII7.2|PP159_ARATH RecName: Full=Pentatricopeptide repeat-c...    72   2e-16
ref|NP_179312.1| pentatricopeptide repeat-containing protein [Ar...    72   2e-16
emb|CBI37746.3| unnamed protein product [Vitis vinifera]               89   5e-16
ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containi...    89   5e-16

>ref|XP_002520932.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539898|gb|EEF41477.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 757

 Score = 75.1 bits (183), Expect(2) = 1e-16
 Identities = 36/63 (57%), Positives = 43/63 (68%)
 Frame = +1

Query: 148 MAEAGFEADAVTIVSLLQICKNLGDPIKCKSIHSRVIRGGFEANEFVKNALIDAYAKCDL 327
           M   G EAD VT+V+ LQICK    P  CK++H   IR G E+NE V N+LIDAYAKC+L
Sbjct: 358 MRTEGIEADEVTLVNCLQICKYFAHPYHCKAVHCATIRRGCESNEIVLNSLIDAYAKCNL 417

Query: 328 AEL 336
            EL
Sbjct: 418 IEL 420



 Score = 35.8 bits (81), Expect(2) = 1e-16
 Identities = 17/32 (53%), Positives = 21/32 (65%)
 Frame = +3

Query: 63  DKVSWNSALSGLVHNERYLEALTLFISFDGRG 158
           + VSWNS LSGL+ N++Y EAL L  S    G
Sbjct: 331 NNVSWNSLLSGLILNKKYSEALLLVYSMRTEG 362


>sp|Q9SII7.2|PP159_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17210
          Length = 736

 Score = 72.4 bits (176), Expect(2) = 2e-16
 Identities = 32/66 (48%), Positives = 44/66 (66%)
 Frame = +1

Query: 136 LFPLMAEAGFEADAVTIVSLLQICKNLGDPIKCKSIHSRVIRGGFEANEFVKNALIDAYA 315
           +F LM +   E D VT+VSLL++CK    P+ CKSIH  +IR G+E+NE   ++LIDAY 
Sbjct: 336 MFHLMVQEAVEVDEVTVVSLLRVCKFFEQPLPCKSIHGVIIRRGYESNEVALSSLIDAYT 395

Query: 316 KCDLAE 333
            C L +
Sbjct: 396 SCSLVD 401



 Score = 38.1 bits (87), Expect(2) = 2e-16
 Identities = 16/23 (69%), Positives = 19/23 (82%)
 Frame = +3

Query: 69  VSWNSALSGLVHNERYLEALTLF 137
           VSWNS L+G VHN+RY EAL +F
Sbjct: 315 VSWNSILAGFVHNQRYDEALEMF 337


>ref|NP_179312.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|4584344|gb|AAD25139.1| putative selenium-binding
           protein [Arabidopsis thaliana]
           gi|330251504|gb|AEC06598.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score = 72.4 bits (176), Expect(2) = 2e-16
 Identities = 32/66 (48%), Positives = 44/66 (66%)
 Frame = +1

Query: 136 LFPLMAEAGFEADAVTIVSLLQICKNLGDPIKCKSIHSRVIRGGFEANEFVKNALIDAYA 315
           +F LM +   E D VT+VSLL++CK    P+ CKSIH  +IR G+E+NE   ++LIDAY 
Sbjct: 315 MFHLMVQEAVEVDEVTVVSLLRVCKFFEQPLPCKSIHGVIIRRGYESNEVALSSLIDAYT 374

Query: 316 KCDLAE 333
            C L +
Sbjct: 375 SCSLVD 380



 Score = 38.1 bits (87), Expect(2) = 2e-16
 Identities = 16/23 (69%), Positives = 19/23 (82%)
 Frame = +3

Query: 69  VSWNSALSGLVHNERYLEALTLF 137
           VSWNS L+G VHN+RY EAL +F
Sbjct: 294 VSWNSILAGFVHNQRYDEALEMF 316


>emb|CBI37746.3| unnamed protein product [Vitis vinifera]
          Length = 2090

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 44/67 (65%), Positives = 51/67 (76%)
 Frame = +1

Query: 136 LFPLMAEAGFEADAVTIVSLLQICKNLGDPIKCKSIHSRVIRGGFEANEFVKNALIDAYA 315
           LF  M +AGF AD VT+V+LLQ CK   DP +CK IHS VIR G+E NEFV N+LIDAY+
Sbjct: 325 LFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYS 384

Query: 316 KCDLAEL 336
           KCDL EL
Sbjct: 385 KCDLIEL 391



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 7/83 (8%)
 Frame = +1

Query: 97  WSTMSGIW------KL*PYLF-PLMAEAGFEADAVTIVSLLQICKNLGDPIKCKSIHSRV 255
           WS M G +      K+   LF  + + A  E D +T+VS+L+ C N GD    +S+H  V
Sbjct: 204 WSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHGVV 263

Query: 256 IRGGFEANEFVKNALIDAYAKCD 324
           I  G + + FV N++ID Y+KCD
Sbjct: 264 ICRGLDYDLFVGNSIIDMYSKCD 286


>ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Vitis vinifera]
          Length = 742

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 44/67 (65%), Positives = 51/67 (76%)
 Frame = +1

Query: 136 LFPLMAEAGFEADAVTIVSLLQICKNLGDPIKCKSIHSRVIRGGFEANEFVKNALIDAYA 315
           LF  M +AGF AD VT+V+LLQ CK   DP +CK IHS VIR G+E NEFV N+LIDAY+
Sbjct: 339 LFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYS 398

Query: 316 KCDLAEL 336
           KCDL EL
Sbjct: 399 KCDLIEL 405



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 7/83 (8%)
 Frame = +1

Query: 97  WSTMSGIW------KL*PYLF-PLMAEAGFEADAVTIVSLLQICKNLGDPIKCKSIHSRV 255
           WS M G +      K+   LF  + + A  E D +T+VS+L+ C N GD    +S+H  V
Sbjct: 218 WSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHGVV 277

Query: 256 IRGGFEANEFVKNALIDAYAKCD 324
           I  G + + FV N++ID Y+KCD
Sbjct: 278 ICRGLDYDLFVGNSIIDMYSKCD 300