BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029697
         (293 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containi...   174   7e-42
ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containi...   169   2e-40
ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containi...   169   2e-40
ref|XP_003594555.1| Pentatricopeptide repeat-containing protein ...   167   6e-40
ref|XP_003547332.1| PREDICTED: pentatricopeptide repeat-containi...   161   5e-38

>ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
           [Vitis vinifera]
          Length = 990

 Score =  174 bits (441), Expect = 7e-42
 Identities = 80/97 (82%), Positives = 92/97 (94%)
 Frame = -3

Query: 291 KNGCQPNEFTYSVILNVLVVEGQLGKLDEVIDVSKKYINKSIYAYLVKTLSKLGHANEAH 112
           +N C+PN FT+SVILNVLV EGQLG+LDEV++VS K++NKSIYAYLV+TLSKLGHA+EAH
Sbjct: 175 ENNCRPNGFTFSVILNVLVAEGQLGRLDEVVEVSNKFMNKSIYAYLVRTLSKLGHASEAH 234

Query: 111 RLFCNMWSFHDKGDRDAYMSMLESLCDAGRTAEALDL 1
           RLFCNMWSFHD+GDRDAYMSMLESLCDAG+T EALDL
Sbjct: 235 RLFCNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDL 271


>ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 685

 Score =  169 bits (429), Expect = 2e-40
 Identities = 77/97 (79%), Positives = 90/97 (92%)
 Frame = -3

Query: 291 KNGCQPNEFTYSVILNVLVVEGQLGKLDEVIDVSKKYINKSIYAYLVKTLSKLGHANEAH 112
           KN C+PNEFTYS+ILNVLV EGQLG+LDEV++VS K+INKSIYAYLV+TLSKLGH++EAH
Sbjct: 367 KNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAH 426

Query: 111 RLFCNMWSFHDKGDRDAYMSMLESLCDAGRTAEALDL 1
           RLFCNMWSFHD GDRDAY+SMLESLC  G+T EA++L
Sbjct: 427 RLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIEL 463


>ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Cucumis sativus]
          Length = 690

 Score =  169 bits (429), Expect = 2e-40
 Identities = 77/97 (79%), Positives = 90/97 (92%)
 Frame = -3

Query: 291 KNGCQPNEFTYSVILNVLVVEGQLGKLDEVIDVSKKYINKSIYAYLVKTLSKLGHANEAH 112
           KN C+PNEFTYS+ILNVLV EGQLG+LDEV++VS K+INKSIYAYLV+TLSKLGH++EAH
Sbjct: 372 KNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSNKFINKSIYAYLVRTLSKLGHSSEAH 431

Query: 111 RLFCNMWSFHDKGDRDAYMSMLESLCDAGRTAEALDL 1
           RLFCNMWSFHD GDRDAY+SMLESLC  G+T EA++L
Sbjct: 432 RLFCNMWSFHDGGDRDAYISMLESLCRGGKTVEAIEL 468


>ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355483603|gb|AES64806.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  167 bits (424), Expect = 6e-40
 Identities = 74/97 (76%), Positives = 89/97 (91%)
 Frame = -3

Query: 291 KNGCQPNEFTYSVILNVLVVEGQLGKLDEVIDVSKKYINKSIYAYLVKTLSKLGHANEAH 112
           +NGCQPNEFTYSV+LNVLV EGQL KLD ++++SKKY+NK IYAY V+TLSKLGH++EAH
Sbjct: 321 ENGCQPNEFTYSVLLNVLVAEGQLNKLDNIVEMSKKYMNKQIYAYFVRTLSKLGHSSEAH 380

Query: 111 RLFCNMWSFHDKGDRDAYMSMLESLCDAGRTAEALDL 1
           RLFCNMW+ HDKGD+DAYMSMLESLC +G+ AEA+DL
Sbjct: 381 RLFCNMWNVHDKGDKDAYMSMLESLCSSGKIAEAIDL 417


>ref|XP_003547332.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  161 bits (408), Expect = 5e-38
 Identities = 73/97 (75%), Positives = 86/97 (88%)
 Frame = -3

Query: 291 KNGCQPNEFTYSVILNVLVVEGQLGKLDEVIDVSKKYINKSIYAYLVKTLSKLGHANEAH 112
           +N  QPNEFTYSVILN+LV EG+L KLD ++D+SKKYINK IYAY V+TLSK+GHA+EAH
Sbjct: 329 ENDIQPNEFTYSVILNLLVAEGKLNKLDNIVDISKKYINKQIYAYFVRTLSKVGHASEAH 388

Query: 111 RLFCNMWSFHDKGDRDAYMSMLESLCDAGRTAEALDL 1
           RLFCNMW+FHDKGD+DA MSMLESLC AG+  EA+DL
Sbjct: 389 RLFCNMWNFHDKGDKDACMSMLESLCSAGKMTEAIDL 425