BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029554
         (317 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004160350.1| PREDICTED: pentatricopeptide repeat-containi...    58   9e-07
ref|XP_004137884.1| PREDICTED: pentatricopeptide repeat-containi...    58   9e-07
ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containi...    56   4e-06
emb|CAN82226.1| hypothetical protein VITISV_011875 [Vitis vinifera]    56   4e-06
ref|XP_002303738.1| predicted protein [Populus trichocarpa] gi|2...    55   5e-06

>ref|XP_004160350.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 429

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 27/45 (60%), Positives = 33/45 (73%)
 Frame = +1

Query: 181 ALRVLDEIPHTDTFAWNSIIQTHLSNADLRLALLVYPQMLLRGVR 315
           A +V D+IP  DTFAWN++IQTHL+N DL   +  Y QML RGVR
Sbjct: 12  AHQVFDDIPIWDTFAWNNLIQTHLTNGDLGHVISTYRQMLFRGVR 56


>ref|XP_004137884.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 629

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 27/45 (60%), Positives = 33/45 (73%)
 Frame = +1

Query: 181 ALRVLDEIPHTDTFAWNSIIQTHLSNADLRLALLVYPQMLLRGVR 315
           A +V D+IP  DTFAWN++IQTHL+N DL   +  Y QML RGVR
Sbjct: 12  AHQVFDDIPIWDTFAWNNLIQTHLTNGDLGHVISTYRQMLFRGVR 56


>ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 662

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 25/43 (58%), Positives = 33/43 (76%)
 Frame = +1

Query: 187 RVLDEIPHTDTFAWNSIIQTHLSNADLRLALLVYPQMLLRGVR 315
           ++ DEIP ++TFAWN++IQTHL+N D    +  Y QMLLRGVR
Sbjct: 48  QLFDEIPVSNTFAWNNLIQTHLTNGDSDRVVSTYRQMLLRGVR 90


>emb|CAN82226.1| hypothetical protein VITISV_011875 [Vitis vinifera]
          Length = 734

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 25/43 (58%), Positives = 33/43 (76%)
 Frame = +1

Query: 187 RVLDEIPHTDTFAWNSIIQTHLSNADLRLALLVYPQMLLRGVR 315
           ++ DEIP ++TFAWN++IQTHL+N D    +  Y QMLLRGVR
Sbjct: 143 QLFDEIPVSNTFAWNNLIQTHLTNGDSGRVVSTYRQMLLRGVR 185


>ref|XP_002303738.1| predicted protein [Populus trichocarpa] gi|222841170|gb|EEE78717.1|
           predicted protein [Populus trichocarpa]
          Length = 663

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 25/41 (60%), Positives = 32/41 (78%)
 Frame = +1

Query: 187 RVLDEIPHTDTFAWNSIIQTHLSNADLRLALLVYPQMLLRG 309
           +VLDEIP +DTFAWN++I THLSN D   AL +Y  M++RG
Sbjct: 49  KVLDEIPLSDTFAWNNLIHTHLSNRDPGGALSIYHHMMMRG 89