BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029540
         (616 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274754.1| PREDICTED: THO complex subunit 3 [Vitis vini...   209   3e-52
ref|XP_004149572.1| PREDICTED: THO complex subunit 3-like [Cucum...   208   7e-52
ref|XP_004170178.1| PREDICTED: THO complex subunit 3-like [Cucum...   206   3e-51
ref|XP_002300586.1| predicted protein [Populus trichocarpa] gi|1...   201   9e-50
ref|NP_200424.1| THO complex subunit 3 [Arabidopsis thaliana] gi...   199   4e-49

>ref|XP_002274754.1| PREDICTED: THO complex subunit 3 [Vitis vinifera]
           gi|147789347|emb|CAN62349.1| hypothetical protein
           VITISV_004943 [Vitis vinifera]
           gi|296089987|emb|CBI39806.3| unnamed protein product
           [Vitis vinifera]
          Length = 313

 Score =  209 bits (532), Expect = 3e-52
 Identities = 98/107 (91%), Positives = 104/107 (97%)
 Frame = -2

Query: 615 VGSADSLVSLWDMSEMLCVRTFTKLEWPVRTISFNSTGEYIASASEDLFIDIANVQSGRT 436
           VGSADSLVSLWD+SEMLCVRTFTKLEWPVRTISFN TGEYIASASEDLFIDI+NV +GRT
Sbjct: 207 VGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFNHTGEYIASASEDLFIDISNVHTGRT 266

Query: 435 IHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYSADDGVFRVFGFESA 295
           +HQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY AD+GVFR+FGFESA
Sbjct: 267 VHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQADEGVFRIFGFESA 313


>ref|XP_004149572.1| PREDICTED: THO complex subunit 3-like [Cucumis sativus]
          Length = 314

 Score =  208 bits (529), Expect = 7e-52
 Identities = 96/106 (90%), Positives = 104/106 (98%)
 Frame = -2

Query: 615 VGSADSLVSLWDMSEMLCVRTFTKLEWPVRTISFNSTGEYIASASEDLFIDIANVQSGRT 436
           VGSADSLVSLWD+S+MLCVRTFTKLEWPVRTISFN TGEYIASASEDLFIDI+NVQ+GRT
Sbjct: 208 VGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRT 267

Query: 435 IHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYSADDGVFRVFGFES 298
           +HQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY AD+G+FR+FGFES
Sbjct: 268 VHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQADEGIFRIFGFES 313


>ref|XP_004170178.1| PREDICTED: THO complex subunit 3-like [Cucumis sativus]
          Length = 314

 Score =  206 bits (524), Expect = 3e-51
 Identities = 95/106 (89%), Positives = 103/106 (97%)
 Frame = -2

Query: 615 VGSADSLVSLWDMSEMLCVRTFTKLEWPVRTISFNSTGEYIASASEDLFIDIANVQSGRT 436
           VGSADSLVSLWD+S+MLCVRTFTKL WPVRTISFN TGEYIASASEDLFIDI+NVQ+GRT
Sbjct: 208 VGSADSLVSLWDISQMLCVRTFTKLRWPVRTISFNHTGEYIASASEDLFIDISNVQTGRT 267

Query: 435 IHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYSADDGVFRVFGFES 298
           +HQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY AD+G+FR+FGFES
Sbjct: 268 VHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQADEGIFRIFGFES 313


>ref|XP_002300586.1| predicted protein [Populus trichocarpa] gi|118482489|gb|ABK93167.1|
           unknown [Populus trichocarpa]
           gi|222847844|gb|EEE85391.1| predicted protein [Populus
           trichocarpa]
          Length = 313

 Score =  201 bits (511), Expect = 9e-50
 Identities = 93/107 (86%), Positives = 103/107 (96%)
 Frame = -2

Query: 615 VGSADSLVSLWDMSEMLCVRTFTKLEWPVRTISFNSTGEYIASASEDLFIDIANVQSGRT 436
           VGSADSLVSLWD+SEMLCVRTFTKLEWPVRTISFN TG++IASASEDLFIDI+NV +GR+
Sbjct: 207 VGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFNHTGDFIASASEDLFIDISNVHTGRS 266

Query: 435 IHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYSADDGVFRVFGFESA 295
           +HQIPCRAAMNSVEWNPK+NLLAYAGDDKNKY  D+GVFR+FGFESA
Sbjct: 267 VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQTDEGVFRIFGFESA 313


>ref|NP_200424.1| THO complex subunit 3 [Arabidopsis thaliana]
           gi|9758633|dbj|BAB09295.1| unnamed protein product
           [Arabidopsis thaliana] gi|20260442|gb|AAM13119.1|
           unknown protein [Arabidopsis thaliana]
           gi|23197932|gb|AAN15493.1| unknown protein [Arabidopsis
           thaliana] gi|332009341|gb|AED96724.1| THO complex
           subunit 3 [Arabidopsis thaliana]
          Length = 315

 Score =  199 bits (505), Expect = 4e-49
 Identities = 94/108 (87%), Positives = 105/108 (97%), Gaps = 1/108 (0%)
 Frame = -2

Query: 615 VGSADSLVSLWDMSEMLCVRTFTKLEWPVRTISFNSTGEYIASASEDLFIDIANVQSGRT 436
           VGSADSLVSLWD+S+MLC+RTFTKLEWPVRTISFN +GEYIASASEDLFIDIANVQ+GRT
Sbjct: 208 VGSADSLVSLWDISDMLCLRTFTKLEWPVRTISFNYSGEYIASASEDLFIDIANVQTGRT 267

Query: 435 IHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYSADDGVFRVFGFESA 295
           +HQIPCRAAMNSVEWNPK+NLLAYAGDDKN KY+ D+GVFR+FGFES+
Sbjct: 268 VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNPKYNTDEGVFRIFGFESS 315