BLASTX nr result
ID: Coptis21_contig00029540
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00029540 (616 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002274754.1| PREDICTED: THO complex subunit 3 [Vitis vini... 209 3e-52 ref|XP_004149572.1| PREDICTED: THO complex subunit 3-like [Cucum... 208 7e-52 ref|XP_004170178.1| PREDICTED: THO complex subunit 3-like [Cucum... 206 3e-51 ref|XP_002300586.1| predicted protein [Populus trichocarpa] gi|1... 201 9e-50 ref|NP_200424.1| THO complex subunit 3 [Arabidopsis thaliana] gi... 199 4e-49 >ref|XP_002274754.1| PREDICTED: THO complex subunit 3 [Vitis vinifera] gi|147789347|emb|CAN62349.1| hypothetical protein VITISV_004943 [Vitis vinifera] gi|296089987|emb|CBI39806.3| unnamed protein product [Vitis vinifera] Length = 313 Score = 209 bits (532), Expect = 3e-52 Identities = 98/107 (91%), Positives = 104/107 (97%) Frame = -2 Query: 615 VGSADSLVSLWDMSEMLCVRTFTKLEWPVRTISFNSTGEYIASASEDLFIDIANVQSGRT 436 VGSADSLVSLWD+SEMLCVRTFTKLEWPVRTISFN TGEYIASASEDLFIDI+NV +GRT Sbjct: 207 VGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFNHTGEYIASASEDLFIDISNVHTGRT 266 Query: 435 IHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYSADDGVFRVFGFESA 295 +HQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY AD+GVFR+FGFESA Sbjct: 267 VHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQADEGVFRIFGFESA 313 >ref|XP_004149572.1| PREDICTED: THO complex subunit 3-like [Cucumis sativus] Length = 314 Score = 208 bits (529), Expect = 7e-52 Identities = 96/106 (90%), Positives = 104/106 (98%) Frame = -2 Query: 615 VGSADSLVSLWDMSEMLCVRTFTKLEWPVRTISFNSTGEYIASASEDLFIDIANVQSGRT 436 VGSADSLVSLWD+S+MLCVRTFTKLEWPVRTISFN TGEYIASASEDLFIDI+NVQ+GRT Sbjct: 208 VGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNHTGEYIASASEDLFIDISNVQTGRT 267 Query: 435 IHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYSADDGVFRVFGFES 298 +HQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY AD+G+FR+FGFES Sbjct: 268 VHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQADEGIFRIFGFES 313 >ref|XP_004170178.1| PREDICTED: THO complex subunit 3-like [Cucumis sativus] Length = 314 Score = 206 bits (524), Expect = 3e-51 Identities = 95/106 (89%), Positives = 103/106 (97%) Frame = -2 Query: 615 VGSADSLVSLWDMSEMLCVRTFTKLEWPVRTISFNSTGEYIASASEDLFIDIANVQSGRT 436 VGSADSLVSLWD+S+MLCVRTFTKL WPVRTISFN TGEYIASASEDLFIDI+NVQ+GRT Sbjct: 208 VGSADSLVSLWDISQMLCVRTFTKLRWPVRTISFNHTGEYIASASEDLFIDISNVQTGRT 267 Query: 435 IHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYSADDGVFRVFGFES 298 +HQIPCRAAMNSVEWNPKHNLLAYAGDDKNKY AD+G+FR+FGFES Sbjct: 268 VHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQADEGIFRIFGFES 313 >ref|XP_002300586.1| predicted protein [Populus trichocarpa] gi|118482489|gb|ABK93167.1| unknown [Populus trichocarpa] gi|222847844|gb|EEE85391.1| predicted protein [Populus trichocarpa] Length = 313 Score = 201 bits (511), Expect = 9e-50 Identities = 93/107 (86%), Positives = 103/107 (96%) Frame = -2 Query: 615 VGSADSLVSLWDMSEMLCVRTFTKLEWPVRTISFNSTGEYIASASEDLFIDIANVQSGRT 436 VGSADSLVSLWD+SEMLCVRTFTKLEWPVRTISFN TG++IASASEDLFIDI+NV +GR+ Sbjct: 207 VGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFNHTGDFIASASEDLFIDISNVHTGRS 266 Query: 435 IHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYSADDGVFRVFGFESA 295 +HQIPCRAAMNSVEWNPK+NLLAYAGDDKNKY D+GVFR+FGFESA Sbjct: 267 VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQTDEGVFRIFGFESA 313 >ref|NP_200424.1| THO complex subunit 3 [Arabidopsis thaliana] gi|9758633|dbj|BAB09295.1| unnamed protein product [Arabidopsis thaliana] gi|20260442|gb|AAM13119.1| unknown protein [Arabidopsis thaliana] gi|23197932|gb|AAN15493.1| unknown protein [Arabidopsis thaliana] gi|332009341|gb|AED96724.1| THO complex subunit 3 [Arabidopsis thaliana] Length = 315 Score = 199 bits (505), Expect = 4e-49 Identities = 94/108 (87%), Positives = 105/108 (97%), Gaps = 1/108 (0%) Frame = -2 Query: 615 VGSADSLVSLWDMSEMLCVRTFTKLEWPVRTISFNSTGEYIASASEDLFIDIANVQSGRT 436 VGSADSLVSLWD+S+MLC+RTFTKLEWPVRTISFN +GEYIASASEDLFIDIANVQ+GRT Sbjct: 208 VGSADSLVSLWDISDMLCLRTFTKLEWPVRTISFNYSGEYIASASEDLFIDIANVQTGRT 267 Query: 435 IHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYSADDGVFRVFGFESA 295 +HQIPCRAAMNSVEWNPK+NLLAYAGDDKN KY+ D+GVFR+FGFES+ Sbjct: 268 VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNPKYNTDEGVFRIFGFESS 315