BLASTX nr result

ID: Coptis21_contig00028498 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028498
         (241 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003559681.1| PREDICTED: serpin-ZX-like [Brachypodium dist...    83   3e-14
ref|XP_002466824.1| hypothetical protein SORBIDRAFT_01g014740 [S...    81   8e-14
ref|XP_002466823.1| hypothetical protein SORBIDRAFT_01g014730 [S...    80   2e-13
ref|NP_175202.1| serpin-ZX [Arabidopsis thaliana] gi|75313047|sp...    77   1e-12
pdb|3LE2|A Chain A, Structure Of Arabidopsis Atserpin1. Native S...    77   1e-12

>ref|XP_003559681.1| PREDICTED: serpin-ZX-like [Brachypodium distachyon]
          Length = 403

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 45/82 (54%), Positives = 58/82 (70%), Gaps = 3/82 (3%)
 Frame = +3

Query: 3   SDPLFLEKYVSLYPSVVDVREFMIPKFKMTFYVEASEILRGVGLKLPFSGKAELDEMV-- 176
           S P FLEKY  L    V V +  +PKFK+TF  EAS++L+G+GL+LPFS +A+  EMV  
Sbjct: 267 SKPGFLEKY--LPTQKVPVGQLKLPKFKITFGFEASDVLKGLGLQLPFSAQADFSEMVDS 324

Query: 177 -LGDRLCVSNVHHKSHIEVNEE 239
            +G  LCVS+V HKS +EVNEE
Sbjct: 325 PVGQNLCVSSVFHKSFVEVNEE 346


>ref|XP_002466824.1| hypothetical protein SORBIDRAFT_01g014740 [Sorghum bicolor]
           gi|241920678|gb|EER93822.1| hypothetical protein
           SORBIDRAFT_01g014740 [Sorghum bicolor]
          Length = 468

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 42/82 (51%), Positives = 61/82 (74%), Gaps = 3/82 (3%)
 Frame = +3

Query: 3   SDPLFLEKYVSLYPSVVDVREFMIPKFKMTFYVEASEILRGVGLKLPFSGKAELDEMV-- 176
           S+P FL+KY+ +    V V +F +PKFK++F  EAS++L+G+GL+LPFS +A+L E+V  
Sbjct: 335 SEPEFLDKYIPMQK--VPVGQFKVPKFKISFGFEASKLLKGLGLQLPFSAQADLSELVDS 392

Query: 177 -LGDRLCVSNVHHKSHIEVNEE 239
             G  L VS+V+HKS +EVNEE
Sbjct: 393 PEGQNLSVSSVYHKSFVEVNEE 414


>ref|XP_002466823.1| hypothetical protein SORBIDRAFT_01g014730 [Sorghum bicolor]
           gi|241920677|gb|EER93821.1| hypothetical protein
           SORBIDRAFT_01g014730 [Sorghum bicolor]
          Length = 398

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 40/82 (48%), Positives = 60/82 (73%), Gaps = 3/82 (3%)
 Frame = +3

Query: 3   SDPLFLEKYVSLYPSVVDVREFMIPKFKMTFYVEASEILRGVGLKLPFSGKAELDEMV-- 176
           S+P F+E+++      V V +F +PKFK++F  EAS++L+G+GL+LPFS +A+L E+V  
Sbjct: 265 SEPEFMEEHIPTRK--VPVGQFKVPKFKVSFGFEASDLLKGLGLELPFSSQADLSELVHL 322

Query: 177 -LGDRLCVSNVHHKSHIEVNEE 239
             G  LCVS++ HKS +EVNEE
Sbjct: 323 PAGQNLCVSSIFHKSFVEVNEE 344


>ref|NP_175202.1| serpin-ZX [Arabidopsis thaliana] gi|75313047|sp|Q9S7T8.1|SPZX_ARATH
           RecName: Full=Serpin-ZX; AltName: Full=ArathZx; AltName:
           Full=AtSerpin1; AltName: Full=Serpin-1
           gi|5668792|gb|AAD46018.1|AC007519_3 Strong similarity to
           gb|Z15116 serpin (pazx) from Hordeum vulgare and is a
           member of the PF|00079 Serpin family. ESTs gb|R65473,
           gb|N38150 and gb|AA712968 come from this gene
           [Arabidopsis thaliana]
           gi|9802595|gb|AAF99797.1|AC012463_14 T2E6.22
           [Arabidopsis thaliana] gi|27311755|gb|AAO00843.1|
           serpin, putative [Arabidopsis thaliana]
           gi|30725636|gb|AAP37840.1| At1g47710 [Arabidopsis
           thaliana] gi|332194082|gb|AEE32203.1| serpin-ZX
           [Arabidopsis thaliana]
          Length = 391

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 43/83 (51%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
 Frame = +3

Query: 3   SDPLFLEKYVSLYPSVVDVREFMIPKFKMTFYVEASEILRGVGLKLPFSGKAELDEMV-- 176
           S P FL+ ++      V VREF IPKFK +F  +AS +L+G+GL  PFSG+  L EMV  
Sbjct: 256 STPGFLDNHIPRRQ--VKVREFKIPKFKFSFGFDASNVLKGLGLTSPFSGEEGLTEMVES 313

Query: 177 --LGDRLCVSNVHHKSHIEVNEE 239
             +G  LCVSN+ HK+ IEVNEE
Sbjct: 314 PEMGKNLCVSNIFHKACIEVNEE 336


>pdb|3LE2|A Chain A, Structure Of Arabidopsis Atserpin1. Native Stressed
           Conforma
          Length = 393

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 43/83 (51%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
 Frame = +3

Query: 3   SDPLFLEKYVSLYPSVVDVREFMIPKFKMTFYVEASEILRGVGLKLPFSGKAELDEMV-- 176
           S P FL+ ++      V VREF IPKFK +F  +AS +L+G+GL  PFSG+  L EMV  
Sbjct: 258 STPGFLDNHIPRRQ--VKVREFKIPKFKFSFGFDASNVLKGLGLTSPFSGEEGLTEMVES 315

Query: 177 --LGDRLCVSNVHHKSHIEVNEE 239
             +G  LCVSN+ HK+ IEVNEE
Sbjct: 316 PEMGKNLCVSNIFHKACIEVNEE 338


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