BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028488
         (422 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002326871.1| predicted protein [Populus trichocarpa] gi|2...   194   6e-48
ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containi...   193   1e-47
emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]   193   1e-47
ref|XP_002511599.1| pentatricopeptide repeat-containing protein,...   183   1e-44
ref|XP_002880144.1| pentatricopeptide repeat-containing protein ...   176   2e-42

>ref|XP_002326871.1| predicted protein [Populus trichocarpa] gi|222835186|gb|EEE73621.1|
           predicted protein [Populus trichocarpa]
          Length = 581

 Score =  194 bits (493), Expect = 6e-48
 Identities = 90/138 (65%), Positives = 113/138 (81%)
 Frame = -1

Query: 422 PEKNIVSWSTLIDGYCKNGDLGAARSFFDAMPEKNLVSWNTMISGYSQNKQPCQALELFR 243
           PE+N++SW+++I GYC NGD+ +AR  FDAMPEKNLVSWN MI GY QNKQP +AL+LFR
Sbjct: 226 PERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALKLFR 285

Query: 242 EMQSSSTFQPDNVTVVSILPAIADLGALDFGCWVHGYVQRKGLDRASNVCTALIDMFAKC 63
           E+QSS+ F+P+ VTVVSILPAIA LGAL+ G WVH +VQRK LD A NVCT+L+DM+ KC
Sbjct: 286 ELQSSTVFEPNEVTVVSILPAIATLGALELGEWVHRFVQRKKLDAAVNVCTSLVDMYLKC 345

Query: 62  GETVKAKQVFGRIHNRKT 9
           GE  KA++VF  I  ++T
Sbjct: 346 GEISKARKVFSEIPKKET 363



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 33/113 (29%), Positives = 59/113 (52%)
 Frame = -1

Query: 398 STLIDGYCKNGDLGAARSFFDAMPEKNLVSWNTMISGYSQNKQPCQALELFREMQSSSTF 219
           ++L+D Y K G++  AR  F  +P+K   +WN +I+G++ N    +ALE F EMQ     
Sbjct: 336 TSLVDMYLKCGEISKARKVFSEIPKKETATWNALINGFAMNGLASEALEAFSEMQQEG-I 394

Query: 218 QPDNVTVVSILPAIADLGALDFGCWVHGYVQRKGLDRASNVCTALIDMFAKCG 60
           +P+++T+  +L A +  G ++ G      +   GL         L+D+  + G
Sbjct: 395 KPNDITMTGVLSACSHGGLVEEGKGQFKAMIESGLSPKIEHYGCLVDLLGRAG 447


>ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
           [Vitis vinifera] gi|297734603|emb|CBI16654.3| unnamed
           protein product [Vitis vinifera]
          Length = 577

 Score =  193 bits (490), Expect = 1e-47
 Identities = 91/140 (65%), Positives = 115/140 (82%)
 Frame = -1

Query: 422 PEKNIVSWSTLIDGYCKNGDLGAARSFFDAMPEKNLVSWNTMISGYSQNKQPCQALELFR 243
           PE+++VSW+ +I GY  NG+L +ARS FDAMPEKNL SWN MISGY QNKQP +AL+LF 
Sbjct: 212 PERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFH 271

Query: 242 EMQSSSTFQPDNVTVVSILPAIADLGALDFGCWVHGYVQRKGLDRASNVCTALIDMFAKC 63
           EMQS+++ +PD VT+VS+LPAIADLGALD G WVH +V+RK LDRA+NV TALIDM+AKC
Sbjct: 272 EMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKC 331

Query: 62  GETVKAKQVFGRIHNRKTPS 3
           GE VK++ VF  +  ++T S
Sbjct: 332 GEIVKSRGVFDNMPEKETAS 351



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 36/121 (29%), Positives = 63/121 (52%)
 Frame = -1

Query: 398 STLIDGYCKNGDLGAARSFFDAMPEKNLVSWNTMISGYSQNKQPCQALELFREMQSSSTF 219
           + LID Y K G++  +R  FD MPEK   SWN +I+ ++ N +  +AL LF EM     F
Sbjct: 322 TALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKG-F 380

Query: 218 QPDNVTVVSILPAIADLGALDFGCWVHGYVQRKGLDRASNVCTALIDMFAKCGETVKAKQ 39
            P+ +T++ +L A    G ++ G      ++  GL         ++D+  + G   +A++
Sbjct: 381 MPNEITMIGVLSACNHSGLVEEGKRWFKAMEEFGLTPKIEHYGCMVDLLGRAGCLQEAEK 440

Query: 38  V 36
           +
Sbjct: 441 L 441


>emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
          Length = 751

 Score =  193 bits (490), Expect = 1e-47
 Identities = 91/140 (65%), Positives = 115/140 (82%)
 Frame = -1

Query: 422 PEKNIVSWSTLIDGYCKNGDLGAARSFFDAMPEKNLVSWNTMISGYSQNKQPCQALELFR 243
           PE+++VSW+ +I GY  NG+L +ARS FDAMPEKNL SWN MISGY QNKQP +AL+LF 
Sbjct: 386 PERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFH 445

Query: 242 EMQSSSTFQPDNVTVVSILPAIADLGALDFGCWVHGYVQRKGLDRASNVCTALIDMFAKC 63
           EMQS+++ +PD VT+VS+LPAIADLGALD G WVH +V+RK LDRA+NV TALIDM+AKC
Sbjct: 446 EMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKC 505

Query: 62  GETVKAKQVFGRIHNRKTPS 3
           GE VK++ VF  +  ++T S
Sbjct: 506 GEIVKSRGVFDNMPEKETAS 525



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 36/121 (29%), Positives = 63/121 (52%)
 Frame = -1

Query: 398 STLIDGYCKNGDLGAARSFFDAMPEKNLVSWNTMISGYSQNKQPCQALELFREMQSSSTF 219
           + LID Y K G++  +R  FD MPEK   SWN +I+ ++ N +  +AL LF EM     F
Sbjct: 496 TALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKG-F 554

Query: 218 QPDNVTVVSILPAIADLGALDFGCWVHGYVQRKGLDRASNVCTALIDMFAKCGETVKAKQ 39
            P+ +T++ +L A    G ++ G      ++  GL         ++D+  + G   +A++
Sbjct: 555 MPNEITMIGVLSACNHSGLVEEGKRWFKAMEEFGLTPKIEHYGCMVDLLGRAGCLQEAEK 614

Query: 38  V 36
           +
Sbjct: 615 L 615


>ref|XP_002511599.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548779|gb|EEF50268.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 429

 Score =  183 bits (464), Expect = 1e-44
 Identities = 82/140 (58%), Positives = 109/140 (77%)
 Frame = -1

Query: 422 PEKNIVSWSTLIDGYCKNGDLGAARSFFDAMPEKNLVSWNTMISGYSQNKQPCQALELFR 243
           P +N++SW+++I GYC  GD+  ARS FDAMPE+NL SWN MI GYSQN +  +AL+LF 
Sbjct: 212 PARNVISWTSMIYGYCSGGDVLTARSLFDAMPERNLFSWNAMIGGYSQNNKSHEALKLFH 271

Query: 242 EMQSSSTFQPDNVTVVSILPAIADLGALDFGCWVHGYVQRKGLDRASNVCTALIDMFAKC 63
           EMQS + F+PD VTVVS+LPAIADLGALD G W+H + + K +DR+ NVCTAL+DM+AKC
Sbjct: 272 EMQSRTLFEPDKVTVVSVLPAIADLGALDLGSWIHQFARLKKIDRSINVCTALVDMYAKC 331

Query: 62  GETVKAKQVFGRIHNRKTPS 3
           GE +KA++VF  +  ++  S
Sbjct: 332 GEMLKARRVFDSMPKKEEAS 351



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 32/90 (35%), Positives = 55/90 (61%)
 Frame = -1

Query: 419 EKNIVSWSTLIDGYCKNGDLGAARSFFDAMPEKNLVSWNTMISGYSQNKQPCQALELFRE 240
           +++I   + L+D Y K G++  AR  FD+MP+K   SWN +I+G++ N    +AL  F E
Sbjct: 315 DRSINVCTALVDMYAKCGEMLKARRVFDSMPKKEEASWNALINGFAVNGCADEALTAFSE 374

Query: 239 MQSSSTFQPDNVTVVSILPAIADLGALDFG 150
           M+     +P++VT++S+L A    G ++ G
Sbjct: 375 MKREGV-KPNDVTMISVLSACNHGGLVEEG 403



 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
 Frame = -1

Query: 353 ARSFFDAMPEKN-LVSWNTMISGYSQNKQPCQALELFREMQSSSTFQPDNVTVVSILPAI 177
           AR  FD  P K+     N+MI  +   +Q  ++  L+++++  + F PDN T  ++  + 
Sbjct: 39  ARQVFDNRPHKDDTFLCNSMIKAHVGMRQFYESFTLYQDLRKGTGFLPDNFTFTALAKSC 98

Query: 176 ADLGALDFGCWVHGYVQRKGLDRASNVCTALIDMFAKCGETVKAKQVFGRIHNR 15
               A+  G  +H +V + G      V TAL+DM+AK GE   A+++F  +  R
Sbjct: 99  GLNMAVWEGFEIHNHVLKMGFGLDLYVSTALVDMYAKFGELCMARKMFDEMAER 152


>ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297325983|gb|EFH56403.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 555

 Score =  176 bits (445), Expect = 2e-42
 Identities = 75/138 (54%), Positives = 107/138 (77%)
 Frame = -1

Query: 416 KNIVSWSTLIDGYCKNGDLGAARSFFDAMPEKNLVSWNTMISGYSQNKQPCQALELFREM 237
           K +++W+T+I GYC + D+ +AR  FDAMPE+NLVSWNTMI GY QNKQP +A+ LF+EM
Sbjct: 205 KTVITWTTMIHGYCNSNDIDSARKLFDAMPERNLVSWNTMIGGYCQNKQPQEAIRLFQEM 264

Query: 236 QSSSTFQPDNVTVVSILPAIADLGALDFGCWVHGYVQRKGLDRASNVCTALIDMFAKCGE 57
           Q++++  PD+VT++S+LPAI+D GAL  G W H +VQRK LD+   VCTA++DM++KCGE
Sbjct: 265 QATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKNLDKKVKVCTAILDMYSKCGE 324

Query: 56  TVKAKQVFGRIHNRKTPS 3
             KAK++F  +  ++  S
Sbjct: 325 IEKAKRIFDEMPEKQVAS 342



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 36/128 (28%), Positives = 67/128 (52%)
 Frame = -1

Query: 419 EKNIVSWSTLIDGYCKNGDLGAARSFFDAMPEKNLVSWNTMISGYSQNKQPCQALELFRE 240
           +K +   + ++D Y K G++  A+  FD MPEK + SWN MI GY+ N     AL+LF  
Sbjct: 306 DKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAHAALDLFLT 365

Query: 239 MQSSSTFQPDNVTVVSILPAIADLGALDFGCWVHGYVQRKGLDRASNVCTALIDMFAKCG 60
           M      +PD +T+++++ A    G ++ G      +++ GL+        ++D+  + G
Sbjct: 366 MAKEE--KPDEITMLAVISACNHGGLVEEGRKWFQMMRKFGLNAKIEHYGCMVDLLGRAG 423

Query: 59  ETVKAKQV 36
              +A+ +
Sbjct: 424 NLKQAEHL 431