BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028458
         (400 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003630764.1| Pentatricopeptide repeat-containing protein ...    54   5e-07
ref|XP_003630782.1| Pentatricopeptide repeat-containing protein ...    54   5e-07
ref|XP_004150383.1| PREDICTED: proteinaceous RNase P 1, chloropl...    57   2e-06
gb|ABR17520.1| unknown [Picea sitchensis]                              56   3e-06
ref|XP_002280803.2| PREDICTED: pentatricopeptide repeat-containi...    56   3e-06

>ref|XP_003630764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355524786|gb|AET05240.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 702

 Score = 53.5 bits (127), Expect(2) = 5e-07
 Identities = 24/36 (66%), Positives = 30/36 (83%)
 Frame = -3

Query: 215 FQNFEEWIDYYGPSEAVIVDAAGMGLFSQRKYSPSK 108
           FQ F++W+DYYGP EAVI DAA +GL+SQ K+ PSK
Sbjct: 454 FQTFQKWLDYYGPFEAVI-DAANVGLYSQGKFMPSK 488



 Score = 25.0 bits (53), Expect(2) = 5e-07
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 304 VKLQ*MEANNFAKSVASIA 248
           + L  +E  NFAKSVASIA
Sbjct: 427 IDLDPVETENFAKSVASIA 445


>ref|XP_003630782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355524804|gb|AET05258.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 668

 Score = 53.5 bits (127), Expect(2) = 5e-07
 Identities = 24/36 (66%), Positives = 30/36 (83%)
 Frame = -3

Query: 215 FQNFEEWIDYYGPSEAVIVDAAGMGLFSQRKYSPSK 108
           FQ F++W+DYYGP EAVI DAA +GL+SQ K+ PSK
Sbjct: 420 FQTFQKWLDYYGPFEAVI-DAANVGLYSQGKFMPSK 454



 Score = 25.0 bits (53), Expect(2) = 5e-07
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 304 VKLQ*MEANNFAKSVASIA 248
           + L  +E  NFAKSVASIA
Sbjct: 393 IDLDPVETENFAKSVASIA 411


>ref|XP_004150383.1| PREDICTED: proteinaceous RNase P 1,
           chloroplastic/mitochondrial-like [Cucumis sativus]
           gi|449506617|ref|XP_004162799.1| PREDICTED:
           proteinaceous RNase P 1,
           chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 633

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 25/37 (67%), Positives = 33/37 (89%)
 Frame = -3

Query: 218 AFQNFEEWIDYYGPSEAVIVDAAGMGLFSQRKYSPSK 108
           +FQ F++W++YYGP EAVI DAA +GLFSQRK++PSK
Sbjct: 427 SFQKFQKWLEYYGPFEAVI-DAANVGLFSQRKFAPSK 462


>gb|ABR17520.1| unknown [Picea sitchensis]
          Length = 378

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 28/38 (73%), Positives = 30/38 (78%)
 Frame = -2

Query: 399 STMFPGITDRKSREIIALAPSRMTIKVVAPLK*NYSEW 286
           STMFPGI DR S+EIIALAPS M IKVVAP +  YS W
Sbjct: 304 STMFPGIADRMSKEIIALAPSSMKIKVVAPPERKYSVW 341


>ref|XP_002280803.2| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
           mitochondrial-like [Vitis vinifera]
          Length = 816

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 25/37 (67%), Positives = 32/37 (86%)
 Frame = -3

Query: 218 AFQNFEEWIDYYGPSEAVIVDAAGMGLFSQRKYSPSK 108
           +FQ F++W+DYYGP EAV VDAA +GLFSQR++ PSK
Sbjct: 534 SFQKFQKWLDYYGPYEAV-VDAANVGLFSQRRFIPSK 569