BLASTX nr result

ID: Coptis21_contig00028419 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028419
         (407 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263903.1| PREDICTED: F-box protein At5g49610 [Vitis vi...    75   4e-12
ref|XP_004146726.1| PREDICTED: F-box protein At5g07610-like [Cuc...    74   2e-11
ref|XP_004171566.1| PREDICTED: F-box protein At5g07610-like [Cuc...    73   2e-11
ref|XP_002329727.1| predicted protein [Populus trichocarpa] gi|2...    64   1e-08
gb|ABK92768.1| unknown [Populus trichocarpa]                           64   1e-08

>ref|XP_002263903.1| PREDICTED: F-box protein At5g49610 [Vitis vinifera]
           gi|296088512|emb|CBI37503.3| unnamed protein product
           [Vitis vinifera]
          Length = 378

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
 Frame = +1

Query: 10  KNILGFLPDEVVVITSSNGILLCRGIFEHHGSNHCSRERMKIRYNVILYVCNPFTKEWTT 189
           + I  FLP++VV++ S NG++ CR +F     +              ++VCNP  K+W  
Sbjct: 82  QTIFSFLPEDVVILGSCNGLVCCRSVFPSPDPS--------------IFVCNPSNKQWIR 127

Query: 190 LKPRGKYKNGCCYGFAYNPFSS-VGSP-NFEVVMV-QPPLQLGKDP-FKFKIYTSTTGTW 357
           L      K    YG A+NPF S +  P NF+VV V Q    +  D  F F+IY+S  G W
Sbjct: 128 LLETTPDKES-SYGLAFNPFQSPIDMPTNFKVVRVSQAQTDMDDDSYFSFEIYSSQAGAW 186

Query: 358 RTSKEVC 378
           + SKE+C
Sbjct: 187 KKSKEIC 193


>ref|XP_004146726.1| PREDICTED: F-box protein At5g07610-like [Cucumis sativus]
          Length = 398

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
 Frame = +1

Query: 10  KNILGFLPDEVVVITSSNGILLCRGIFEHHGSNHCSRERMKIRYNVILYVCNPFTKEWTT 189
           K + GFLP++VV++ S NG++ CR          C R +    ++  +YVCNP  K+W +
Sbjct: 83  KMVFGFLPEDVVILQSCNGLVCCRS---------CFRTQHSTTHSTTIYVCNPLFKKWVS 133

Query: 190 LKPRGKYKNGCCYGFAYNPFSSV--GSPNFEVVMVQPPLQLGKDP----FKFKIYTSTTG 351
            +   +  +      A++P       + NF+VV +Q   QL  +     + F+IY+S TG
Sbjct: 134 FEV-AQLDSFSSIALAFDPILDPVNTATNFKVVRIQ---QLENEQEEMYYTFEIYSSETG 189

Query: 352 TWRTSKEVCTLPDRLLSH 405
           TW+ S EVC     LL++
Sbjct: 190 TWKESSEVCYSDGNLLNN 207


>ref|XP_004171566.1| PREDICTED: F-box protein At5g07610-like [Cucumis sativus]
          Length = 399

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
 Frame = +1

Query: 10  KNILGFLPDEVVVITSSNGILLCRGIFEHHGSNHCSRERMKIRYNVILYVCNPFTKEWTT 189
           K + GFLP++VV++ S NG++ CR          C R +    ++  +YVCNP  K+W +
Sbjct: 83  KMVFGFLPEDVVILQSCNGLVCCRS---------CFRTQHSTTHSTTIYVCNPLFKKWVS 133

Query: 190 LKPRGKYKNGCCYGFAYNPFSSV--GSPNFEVVMVQPPLQLGKDP----FKFKIYTSTTG 351
            +   +  +      A++P       + NF+VV +Q   QL  +     + F+IY+S TG
Sbjct: 134 FEV-AQLDSFSSIALAFDPILDPVNTATNFKVVRIQ---QLENEQEEMYYTFEIYSSETG 189

Query: 352 TWRTSKEVCTLPDRLLSH 405
           TW+ S EVC     LL +
Sbjct: 190 TWKESSEVCYSDGNLLKN 207


>ref|XP_002329727.1| predicted protein [Populus trichocarpa] gi|222870635|gb|EEF07766.1|
           predicted protein [Populus trichocarpa]
          Length = 424

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
 Frame = +1

Query: 10  KNILGFLPDEVVVITSSNGILLCRGIFEHHGSNHCSRERMKIRYNVILYVCNPFTKEWTT 189
           +++  FLP +VVV+   NG++ CR  +                 +  +YVCNP   EW  
Sbjct: 85  QDVFAFLPQDVVVLALCNGLVCCRSCYPFE--------------DPAIYVCNPLNSEWWK 130

Query: 190 LKPRGKYKNGCCYGFAYNPFS--SVGSPNFEVVMV-QPPLQLGKDPFKFKIYTSTTGTWR 360
           L  +   K       A+NPF   SV   NF+VV   Q   +  +  F F+IY S T  W+
Sbjct: 131 LDWKEPGKESFI-ALAFNPFQDISVNLTNFKVVRPRQFETEQEEAYFSFEIYASRTRNWK 189

Query: 361 TSKEVC 378
            SKEVC
Sbjct: 190 LSKEVC 195


>gb|ABK92768.1| unknown [Populus trichocarpa]
          Length = 384

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
 Frame = +1

Query: 10  KNILGFLPDEVVVITSSNGILLCRGIFEHHGSNHCSRERMKIRYNVILYVCNPFTKEWTT 189
           +++  FLP +VVV+   NG++ CR  +                 +  +YVCNP   EW  
Sbjct: 85  QDVFAFLPQDVVVLALCNGLVCCRSCYPFE--------------DPAIYVCNPLNSEWWK 130

Query: 190 LKPRGKYKNGCCYGFAYNPFS--SVGSPNFEVVMV-QPPLQLGKDPFKFKIYTSTTGTWR 360
           L  +   K       A+NPF   SV   NF+VV   Q   +  +  F F+IY S T  W+
Sbjct: 131 LDWKEPGKESFI-ALAFNPFQDISVNLTNFKVVRPRQFETEQEEAYFSFEIYASRTRNWK 189

Query: 361 TSKEVC 378
            SKEVC
Sbjct: 190 LSKEVC 195


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