BLASTX nr result
ID: Coptis21_contig00028419
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00028419
(407 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263903.1| PREDICTED: F-box protein At5g49610 [Vitis vi... 75 4e-12
ref|XP_004146726.1| PREDICTED: F-box protein At5g07610-like [Cuc... 74 2e-11
ref|XP_004171566.1| PREDICTED: F-box protein At5g07610-like [Cuc... 73 2e-11
ref|XP_002329727.1| predicted protein [Populus trichocarpa] gi|2... 64 1e-08
gb|ABK92768.1| unknown [Populus trichocarpa] 64 1e-08
>ref|XP_002263903.1| PREDICTED: F-box protein At5g49610 [Vitis vinifera]
gi|296088512|emb|CBI37503.3| unnamed protein product
[Vitis vinifera]
Length = 378
Score = 75.5 bits (184), Expect = 4e-12
Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Frame = +1
Query: 10 KNILGFLPDEVVVITSSNGILLCRGIFEHHGSNHCSRERMKIRYNVILYVCNPFTKEWTT 189
+ I FLP++VV++ S NG++ CR +F + ++VCNP K+W
Sbjct: 82 QTIFSFLPEDVVILGSCNGLVCCRSVFPSPDPS--------------IFVCNPSNKQWIR 127
Query: 190 LKPRGKYKNGCCYGFAYNPFSS-VGSP-NFEVVMV-QPPLQLGKDP-FKFKIYTSTTGTW 357
L K YG A+NPF S + P NF+VV V Q + D F F+IY+S G W
Sbjct: 128 LLETTPDKES-SYGLAFNPFQSPIDMPTNFKVVRVSQAQTDMDDDSYFSFEIYSSQAGAW 186
Query: 358 RTSKEVC 378
+ SKE+C
Sbjct: 187 KKSKEIC 193
>ref|XP_004146726.1| PREDICTED: F-box protein At5g07610-like [Cucumis sativus]
Length = 398
Score = 73.6 bits (179), Expect = 2e-11
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Frame = +1
Query: 10 KNILGFLPDEVVVITSSNGILLCRGIFEHHGSNHCSRERMKIRYNVILYVCNPFTKEWTT 189
K + GFLP++VV++ S NG++ CR C R + ++ +YVCNP K+W +
Sbjct: 83 KMVFGFLPEDVVILQSCNGLVCCRS---------CFRTQHSTTHSTTIYVCNPLFKKWVS 133
Query: 190 LKPRGKYKNGCCYGFAYNPFSSV--GSPNFEVVMVQPPLQLGKDP----FKFKIYTSTTG 351
+ + + A++P + NF+VV +Q QL + + F+IY+S TG
Sbjct: 134 FEV-AQLDSFSSIALAFDPILDPVNTATNFKVVRIQ---QLENEQEEMYYTFEIYSSETG 189
Query: 352 TWRTSKEVCTLPDRLLSH 405
TW+ S EVC LL++
Sbjct: 190 TWKESSEVCYSDGNLLNN 207
>ref|XP_004171566.1| PREDICTED: F-box protein At5g07610-like [Cucumis sativus]
Length = 399
Score = 73.2 bits (178), Expect = 2e-11
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Frame = +1
Query: 10 KNILGFLPDEVVVITSSNGILLCRGIFEHHGSNHCSRERMKIRYNVILYVCNPFTKEWTT 189
K + GFLP++VV++ S NG++ CR C R + ++ +YVCNP K+W +
Sbjct: 83 KMVFGFLPEDVVILQSCNGLVCCRS---------CFRTQHSTTHSTTIYVCNPLFKKWVS 133
Query: 190 LKPRGKYKNGCCYGFAYNPFSSV--GSPNFEVVMVQPPLQLGKDP----FKFKIYTSTTG 351
+ + + A++P + NF+VV +Q QL + + F+IY+S TG
Sbjct: 134 FEV-AQLDSFSSIALAFDPILDPVNTATNFKVVRIQ---QLENEQEEMYYTFEIYSSETG 189
Query: 352 TWRTSKEVCTLPDRLLSH 405
TW+ S EVC LL +
Sbjct: 190 TWKESSEVCYSDGNLLKN 207
>ref|XP_002329727.1| predicted protein [Populus trichocarpa] gi|222870635|gb|EEF07766.1|
predicted protein [Populus trichocarpa]
Length = 424
Score = 64.3 bits (155), Expect = 1e-08
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Frame = +1
Query: 10 KNILGFLPDEVVVITSSNGILLCRGIFEHHGSNHCSRERMKIRYNVILYVCNPFTKEWTT 189
+++ FLP +VVV+ NG++ CR + + +YVCNP EW
Sbjct: 85 QDVFAFLPQDVVVLALCNGLVCCRSCYPFE--------------DPAIYVCNPLNSEWWK 130
Query: 190 LKPRGKYKNGCCYGFAYNPFS--SVGSPNFEVVMV-QPPLQLGKDPFKFKIYTSTTGTWR 360
L + K A+NPF SV NF+VV Q + + F F+IY S T W+
Sbjct: 131 LDWKEPGKESFI-ALAFNPFQDISVNLTNFKVVRPRQFETEQEEAYFSFEIYASRTRNWK 189
Query: 361 TSKEVC 378
SKEVC
Sbjct: 190 LSKEVC 195
>gb|ABK92768.1| unknown [Populus trichocarpa]
Length = 384
Score = 64.3 bits (155), Expect = 1e-08
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Frame = +1
Query: 10 KNILGFLPDEVVVITSSNGILLCRGIFEHHGSNHCSRERMKIRYNVILYVCNPFTKEWTT 189
+++ FLP +VVV+ NG++ CR + + +YVCNP EW
Sbjct: 85 QDVFAFLPQDVVVLALCNGLVCCRSCYPFE--------------DPAIYVCNPLNSEWWK 130
Query: 190 LKPRGKYKNGCCYGFAYNPFS--SVGSPNFEVVMV-QPPLQLGKDPFKFKIYTSTTGTWR 360
L + K A+NPF SV NF+VV Q + + F F+IY S T W+
Sbjct: 131 LDWKEPGKESFI-ALAFNPFQDISVNLTNFKVVRPRQFETEQEEAYFSFEIYASRTRNWK 189
Query: 361 TSKEVC 378
SKEVC
Sbjct: 190 LSKEVC 195