BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028297
         (765 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282354.1| PREDICTED: splicing factor 3B subunit 3-like...   339   4e-91
emb|CAN64633.1| hypothetical protein VITISV_043788 [Vitis vinifera]   339   4e-91
ref|XP_002534515.1| spliceosomal protein sap, putative [Ricinus ...   338   1e-90
ref|XP_004147708.1| PREDICTED: splicing factor 3B subunit 3-like...   335   8e-90
ref|XP_002312063.1| predicted protein [Populus trichocarpa] gi|2...   330   2e-88

>ref|XP_002282354.1| PREDICTED: splicing factor 3B subunit 3-like [Vitis vinifera]
          Length = 1214

 Score =  339 bits (869), Expect = 4e-91
 Identities = 176/262 (67%), Positives = 204/262 (77%), Gaps = 8/262 (3%)
 Frame = -3

Query: 763 VYVFDRRNGKELKINSPLEAHKSRTFVYDIKGVDVGWENPIFAAIELDYSEAD------V 602
           VYV +R     L I+SPLEAHKS T VY I GVD G++NPIFAAIELDYSEAD       
Sbjct: 140 VYVLNRDTVARLTISSPLEAHKSHTIVYSITGVDCGFDNPIFAAIELDYSEADQDSTGQA 199

Query: 601 GNGAQKFLTFYELDLSLNHVSRKWSEPIDNGANMXXXXXXXXXXXXXXXDCAENYVIFKN 422
            + AQK LTFYELDL LNHVSRKWSE +DNGANM                CAEN+VI+KN
Sbjct: 200 ASEAQKHLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKN 259

Query: 421 LGHPDIHAVIPR-SDLPKERKVLIVSVATYKKKH-FLFLLQSEYGDLFKCTLVFDKEIVR 248
            GHPD+ AVIPR +DLP ER VLIVS AT+++K  F FLLQ+EYGD+FK TL  + + + 
Sbjct: 260 QGHPDVRAVIPRRADLPAERGVLIVSAATHRQKSMFFFLLQTEYGDVFKVTLEHENDRIS 319

Query: 247 ELKIKYFDTLPVTNAMCVLQAGFLFAASEFGNHGLYEIRAIGDPADVESSLATLMETEEG 68
           ELKIKYFDT+PVT++MCVL++GFLFAASEFGNHGLY+ +AIGD ADVESS A+LMETEEG
Sbjct: 320 ELKIKYFDTIPVTSSMCVLKSGFLFAASEFGNHGLYQFQAIGDDADVESSSASLMETEEG 379

Query: 67  FQPVFFRPRGLQNLVRIDQVES 2
           FQPVFF+PRGL+NLVRIDQVES
Sbjct: 380 FQPVFFQPRGLKNLVRIDQVES 401


>emb|CAN64633.1| hypothetical protein VITISV_043788 [Vitis vinifera]
          Length = 1143

 Score =  339 bits (869), Expect = 4e-91
 Identities = 176/262 (67%), Positives = 204/262 (77%), Gaps = 8/262 (3%)
 Frame = -3

Query: 763 VYVFDRRNGKELKINSPLEAHKSRTFVYDIKGVDVGWENPIFAAIELDYSEAD------V 602
           VYV +R     L I+SPLEAHKS T VY I GVD G++NPIFAAIELDYSEAD       
Sbjct: 122 VYVLNRDTVARLTISSPLEAHKSHTIVYSITGVDCGFDNPIFAAIELDYSEADQDSTGQA 181

Query: 601 GNGAQKFLTFYELDLSLNHVSRKWSEPIDNGANMXXXXXXXXXXXXXXXDCAENYVIFKN 422
            + AQK LTFYELDL LNHVSRKWSE +DNGANM                CAEN+VI+KN
Sbjct: 182 ASEAQKHLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKN 241

Query: 421 LGHPDIHAVIPR-SDLPKERKVLIVSVATYKKKH-FLFLLQSEYGDLFKCTLVFDKEIVR 248
            GHPD+ AVIPR +DLP ER VLIVS AT+++K  F FLLQ+EYGD+FK TL  + + + 
Sbjct: 242 QGHPDVRAVIPRRADLPAERGVLIVSAATHRQKSMFFFLLQTEYGDVFKVTLEHENDRIS 301

Query: 247 ELKIKYFDTLPVTNAMCVLQAGFLFAASEFGNHGLYEIRAIGDPADVESSLATLMETEEG 68
           ELKIKYFDT+PVT++MCVL++GFLFAASEFGNHGLY+ +AIGD ADVESS A+LMETEEG
Sbjct: 302 ELKIKYFDTIPVTSSMCVLKSGFLFAASEFGNHGLYQFQAIGDDADVESSSASLMETEEG 361

Query: 67  FQPVFFRPRGLQNLVRIDQVES 2
           FQPVFF+PRGL+NLVRIDQVES
Sbjct: 362 FQPVFFQPRGLKNLVRIDQVES 383


>ref|XP_002534515.1| spliceosomal protein sap, putative [Ricinus communis]
           gi|223525135|gb|EEF27867.1| spliceosomal protein sap,
           putative [Ricinus communis]
          Length = 1214

 Score =  338 bits (866), Expect = 1e-90
 Identities = 175/262 (66%), Positives = 204/262 (77%), Gaps = 8/262 (3%)
 Frame = -3

Query: 763 VYVFDRRNGKELKINSPLEAHKSRTFVYDIKGVDVGWENPIFAAIELDYSEADV------ 602
           VYV +R     L I+SPLEAHKS T VY I GVD G++NPIFAAIELDYSEAD+      
Sbjct: 141 VYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPIFAAIELDYSEADLDSTGQA 200

Query: 601 GNGAQKFLTFYELDLSLNHVSRKWSEPIDNGANMXXXXXXXXXXXXXXXDCAENYVIFKN 422
            N AQK LTFYELDL LNHVSRKWSE +DNGANM                CAEN+VI+KN
Sbjct: 201 ANEAQKVLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKN 260

Query: 421 LGHPDIHAVIPR-SDLPKERKVLIVSVATYKKKH-FLFLLQSEYGDLFKCTLVFDKEIVR 248
            GHPD+ AVIPR +DLP ER VLIVS AT+++K  F FLLQ+EYGD+FK TL  + + V+
Sbjct: 261 EGHPDVRAVIPRRADLPAERGVLIVSAATHRQKSMFFFLLQTEYGDIFKVTLDHENDKVK 320

Query: 247 ELKIKYFDTLPVTNAMCVLQAGFLFAASEFGNHGLYEIRAIGDPADVESSLATLMETEEG 68
           ELKIKYFDT+PVT++MCV++ GFLFAASEFGNH LY+ +AIG+ ADVE+S ATLMETEEG
Sbjct: 321 ELKIKYFDTIPVTSSMCVMKLGFLFAASEFGNHALYQFQAIGEEADVEASSATLMETEEG 380

Query: 67  FQPVFFRPRGLQNLVRIDQVES 2
           FQPVFF+PRGL+NLVRIDQVES
Sbjct: 381 FQPVFFQPRGLKNLVRIDQVES 402


>ref|XP_004147708.1| PREDICTED: splicing factor 3B subunit 3-like [Cucumis sativus]
           gi|449513493|ref|XP_004164340.1| PREDICTED: splicing
           factor 3B subunit 3-like [Cucumis sativus]
          Length = 1214

 Score =  335 bits (858), Expect = 8e-90
 Identities = 174/262 (66%), Positives = 202/262 (77%), Gaps = 8/262 (3%)
 Frame = -3

Query: 763 VYVFDRRNGKELKINSPLEAHKSRTFVYDIKGVDVGWENPIFAAIELDYSEAD------V 602
           VYV +R     L I+SPLEAHKS T VY I G+D G++NPIFAAIELDYSEAD       
Sbjct: 140 VYVLNRDTAARLTISSPLEAHKSHTIVYSICGIDCGFDNPIFAAIELDYSEADQDSTGVA 199

Query: 601 GNGAQKFLTFYELDLSLNHVSRKWSEPIDNGANMXXXXXXXXXXXXXXXDCAENYVIFKN 422
            + AQK LTFYELDL LNHVSRKWSEP+DNGANM                CAEN+VI+KN
Sbjct: 200 ASEAQKHLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGGGDGPSGVLVCAENFVIYKN 259

Query: 421 LGHPDIHAVIPR-SDLPKERKVLIVSVATYKKKH-FLFLLQSEYGDLFKCTLVFDKEIVR 248
            GHPD+ AVIPR +DLP ER VLIVS A +K+K  F FLLQ+EYGD+FK TL  + + V+
Sbjct: 260 QGHPDVRAVIPRRADLPAERGVLIVSAAMHKQKTMFFFLLQTEYGDIFKVTLEHNNDSVK 319

Query: 247 ELKIKYFDTLPVTNAMCVLQAGFLFAASEFGNHGLYEIRAIGDPADVESSLATLMETEEG 68
           ELKIKYFDT+PVT +MCVL++GFLFAASEFGNH LY+ +AIG+ ADVESS ATLMETEEG
Sbjct: 320 ELKIKYFDTIPVTASMCVLKSGFLFAASEFGNHSLYQFQAIGEDADVESSSATLMETEEG 379

Query: 67  FQPVFFRPRGLQNLVRIDQVES 2
           FQPVFF+PR L+NL+RIDQVES
Sbjct: 380 FQPVFFQPRRLKNLMRIDQVES 401


>ref|XP_002312063.1| predicted protein [Populus trichocarpa] gi|222851883|gb|EEE89430.1|
           predicted protein [Populus trichocarpa]
          Length = 1213

 Score =  330 bits (847), Expect = 2e-88
 Identities = 172/262 (65%), Positives = 201/262 (76%), Gaps = 8/262 (3%)
 Frame = -3

Query: 763 VYVFDRRNGKELKINSPLEAHKSRTFVYDIKGVDVGWENPIFAAIELDYSEAD------V 602
           VYV +R     L I+SPLEAHKS T  Y + GVD G++NPIFAAIELDYSEAD       
Sbjct: 140 VYVLNRDTVARLTISSPLEAHKSHTICYSVCGVDCGFDNPIFAAIELDYSEADQDSTGQA 199

Query: 601 GNGAQKFLTFYELDLSLNHVSRKWSEPIDNGANMXXXXXXXXXXXXXXXDCAENYVIFKN 422
              AQK LTFYELDL LNHVSRKWSE +DNGANM                CAEN+VI+KN
Sbjct: 200 AGEAQKNLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGGGDGPSGILVCAENFVIYKN 259

Query: 421 LGHPDIHAVIPR-SDLPKERKVLIVSVATYKKKH-FLFLLQSEYGDLFKCTLVFDKEIVR 248
            GHPD+ AVIPR +DLP ER VLIVS AT+K+K  F FLLQ+EYGD+FK TL  + + V+
Sbjct: 260 QGHPDVRAVIPRRADLPAERGVLIVSAATHKQKSMFFFLLQTEYGDIFKVTLDHENDKVK 319

Query: 247 ELKIKYFDTLPVTNAMCVLQAGFLFAASEFGNHGLYEIRAIGDPADVESSLATLMETEEG 68
           ELKIKYFDT+PVT+++CVL++GFLFAASEFGNH LY+ +AIG+  DVE+S ATLMETEEG
Sbjct: 320 ELKIKYFDTIPVTSSICVLKSGFLFAASEFGNHALYQFQAIGEEEDVEASSATLMETEEG 379

Query: 67  FQPVFFRPRGLQNLVRIDQVES 2
           FQPVFF+PRGL+NLVRIDQVES
Sbjct: 380 FQPVFFQPRGLKNLVRIDQVES 401