BLASTX nr result
ID: Coptis21_contig00028293
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00028293 (201 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003571303.1| PREDICTED: probable pre-mRNA-splicing factor... 135 5e-30 ref|NP_189288.1| ATP-dependent RNA helicase DHX8/PRP22 [Arabidop... 134 8e-30 ref|XP_002510773.1| ATP-dependent RNA helicase, putative [Ricinu... 134 8e-30 ref|XP_002331832.1| predicted protein [Populus trichocarpa] gi|2... 134 8e-30 dbj|BAF00744.1| putative ATP-dependent RNA helicase [Arabidopsis... 134 8e-30 >ref|XP_003571303.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Brachypodium distachyon] Length = 1249 Score = 135 bits (339), Expect = 5e-30 Identities = 65/66 (98%), Positives = 66/66 (100%) Frame = +3 Query: 3 KIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPETVIKYMTDGMLLREIL 182 KIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPETVIKYMTDGMLLREIL Sbjct: 643 KIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPETVIKYMTDGMLLREIL 702 Query: 183 IDENLS 200 +DENLS Sbjct: 703 VDENLS 708 >ref|NP_189288.1| ATP-dependent RNA helicase DHX8/PRP22 [Arabidopsis thaliana] gi|27735187|sp|Q38953.2|DHX8_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gi|9293935|dbj|BAB01838.1| pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gi|332643657|gb|AEE77178.1| ATP-dependent RNA helicase DHX8/PRP22 [Arabidopsis thaliana] Length = 1168 Score = 134 bits (337), Expect = 8e-30 Identities = 65/66 (98%), Positives = 66/66 (100%) Frame = +3 Query: 3 KIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPETVIKYMTDGMLLREIL 182 KIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGP+TVIKYMTDGMLLREIL Sbjct: 562 KIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREIL 621 Query: 183 IDENLS 200 IDENLS Sbjct: 622 IDENLS 627 >ref|XP_002510773.1| ATP-dependent RNA helicase, putative [Ricinus communis] gi|223551474|gb|EEF52960.1| ATP-dependent RNA helicase, putative [Ricinus communis] Length = 1177 Score = 134 bits (337), Expect = 8e-30 Identities = 65/66 (98%), Positives = 66/66 (100%) Frame = +3 Query: 3 KIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPETVIKYMTDGMLLREIL 182 KIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGP+TVIKYMTDGMLLREIL Sbjct: 571 KIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREIL 630 Query: 183 IDENLS 200 IDENLS Sbjct: 631 IDENLS 636 >ref|XP_002331832.1| predicted protein [Populus trichocarpa] gi|222875070|gb|EEF12201.1| predicted protein [Populus trichocarpa] Length = 1171 Score = 134 bits (337), Expect = 8e-30 Identities = 65/66 (98%), Positives = 66/66 (100%) Frame = +3 Query: 3 KIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPETVIKYMTDGMLLREIL 182 KIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGP+TVIKYMTDGMLLREIL Sbjct: 565 KIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREIL 624 Query: 183 IDENLS 200 IDENLS Sbjct: 625 IDENLS 630 >dbj|BAF00744.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana] gi|110740392|dbj|BAF02091.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana] Length = 767 Score = 134 bits (337), Expect = 8e-30 Identities = 65/66 (98%), Positives = 66/66 (100%) Frame = +3 Query: 3 KIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPETVIKYMTDGMLLREIL 182 KIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGP+TVIKYMTDGMLLREIL Sbjct: 218 KIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREIL 277 Query: 183 IDENLS 200 IDENLS Sbjct: 278 IDENLS 283