BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028270
         (514 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002311390.1| predicted protein [Populus trichocarpa] gi|2...   245   3e-63
emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]   155   4e-36
emb|CAN68290.1| hypothetical protein VITISV_019715 [Vitis vinifera]   152   4e-35
ref|NP_193619.1| pentatricopeptide repeat-containing protein [Ar...   152   4e-35
ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containi...   151   6e-35

>ref|XP_002311390.1| predicted protein [Populus trichocarpa] gi|222851210|gb|EEE88757.1|
           predicted protein [Populus trichocarpa]
          Length = 594

 Score =  245 bits (625), Expect = 3e-63
 Identities = 116/171 (67%), Positives = 140/171 (81%)
 Frame = +2

Query: 2   KCPVKFGTHSWNSLMDFYVKSGEMASVVRRVFDGIENPDIVSWNSLLDGYVKSGRVDECR 181
           K P +FG HSWNSL+DFY K GE+  VVRRVFD IE PD+VSWN L++GYVKSG +DE R
Sbjct: 163 KFPFEFGVHSWNSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEAR 222

Query: 182 RVFDEMPCRDTVSWTMMLVGCVNAGLLSEARYVFDEMPERNVVSWSAMISGYVKDGCWKV 361
           R+FDEMP RD VSWT+MLVG  +AG LSEA  +FDEMP+RN+VSWSA+I GY++ GC+  
Sbjct: 223 RLFDEMPERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSK 282

Query: 362 ALGLFKEMQVVGVLADKVMLTSVLSACASLGALDQGCWIHSYIDKHGIEVD 514
           AL LFKEMQV  V  D+V++T++LSACA LGALDQG W+H YIDKHGI+VD
Sbjct: 283 ALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVD 333


>emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  155 bits (391), Expect = 4e-36
 Identities = 78/162 (48%), Positives = 112/162 (69%)
 Frame = +2

Query: 29  SWNSLMDFYVKSGEMASVVRRVFDGIENPDIVSWNSLLDGYVKSGRVDECRRVFDEMPCR 208
           SWN+++D YVK GEM    R VFD +   D++SWN++++GY   G++DE +R+FDEMP R
Sbjct: 68  SWNAMIDGYVKRGEMGHT-RMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLFDEMPER 126

Query: 209 DTVSWTMMLVGCVNAGLLSEARYVFDEMPERNVVSWSAMISGYVKDGCWKVALGLFKEMQ 388
           + VSW  ML G V  G + EA  +F EMP R+VVSW++M++ Y + G    AL LF +M+
Sbjct: 127 NLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMR 186

Query: 389 VVGVLADKVMLTSVLSACASLGALDQGCWIHSYIDKHGIEVD 514
            VGV   +  + S+LSACA LGALD+G  +H+YI+ + IEV+
Sbjct: 187 AVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVN 228



 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 41/188 (21%)
 Frame = +2

Query: 29  SWNSLMDFYVKSGEMASVVRRVFDGIENPDIVSWNSLLDGYVKSGRVDECRRVFDEM--- 199
           SWNS++  +VK G +      +F  +   D+VSWNS+L  Y + G+ +E   +FD+M   
Sbjct: 130 SWNSMLSGFVKCGNVEEAFG-LFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAV 188

Query: 200 ---PCRDTVSWTMMLVGCVNAGLLSE---------------------------------- 268
              P   TV    +L  C + G L +                                  
Sbjct: 189 GVKPTEATV--VSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKIS 246

Query: 269 -ARYVFDEMPERNVVSWSAMISGYVKDGCWKVALGLFKEMQVVGVLADKVMLTSVLSACA 445
            A  VF+ M  ++V++W+ +I+G    G  K A  LFKEM+   V  + +   ++LSAC+
Sbjct: 247 LATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACS 306

Query: 446 SLGALDQG 469
             G +D+G
Sbjct: 307 HAGMVDEG 314


>emb|CAN68290.1| hypothetical protein VITISV_019715 [Vitis vinifera]
          Length = 717

 Score =  152 bits (383), Expect = 4e-35
 Identities = 76/161 (47%), Positives = 110/161 (68%)
 Frame = +2

Query: 29  SWNSLMDFYVKSGEMASVVRRVFDGIENPDIVSWNSLLDGYVKSGRVDECRRVFDEMPCR 208
           SWN+++D YVK GEM    R VFD +   D++SWN++++GY   G++DE +R+FDEMP R
Sbjct: 267 SWNAMIDGYVKRGEMGHA-RIVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPER 325

Query: 209 DTVSWTMMLVGCVNAGLLSEARYVFDEMPERNVVSWSAMISGYVKDGCWKVALGLFKEMQ 388
           + VSW  ML G V  G + +A  +F EMP R+VVSW++M++ Y + G     L LF +M+
Sbjct: 326 NLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEVLALFDQMR 385

Query: 389 VVGVLADKVMLTSVLSACASLGALDQGCWIHSYIDKHGIEV 511
            VGV   +  + S+LSACA LGALD+G  +H+YI+ + IEV
Sbjct: 386 AVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEV 426


>ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75098703|sp|O49399.2|PP321_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g18840 gi|5738365|emb|CAA16741.2| putative protein
           [Arabidopsis thaliana] gi|7268678|emb|CAB78886.1|
           putative protein [Arabidopsis thaliana]
           gi|332658697|gb|AEE84097.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 545

 Score =  152 bits (383), Expect = 4e-35
 Identities = 79/161 (49%), Positives = 104/161 (64%), Gaps = 1/161 (0%)
 Frame = +2

Query: 35  NSLMDFYVKSGEMASVVRRVFDGIENPDIVSWNSLLDGYVKSGRVDECRRVFDEMPCRDT 214
           N+L++ Y +SG    + R+V D +   D VSWNSLL  Y++ G VDE R +FDEM  R+ 
Sbjct: 179 NTLVNVYGRSGYF-EIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEMEERNV 237

Query: 215 VSWTMMLVGCVNAGLLSEARYVFDEMPERNVVSWSAMISGYVKDGCWKVALGLFKEMQVV 394
            SW  M+ G   AGL+ EA+ VFD MP R+VVSW+AM++ Y   GC+   L +F +M   
Sbjct: 238 ESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDD 297

Query: 395 GV-LADKVMLTSVLSACASLGALDQGCWIHSYIDKHGIEVD 514
                D   L SVLSACASLG+L QG W+H YIDKHGIE++
Sbjct: 298 STEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIE 338


>ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  151 bits (381), Expect = 6e-35
 Identities = 76/162 (46%), Positives = 111/162 (68%)
 Frame = +2

Query: 29  SWNSLMDFYVKSGEMASVVRRVFDGIENPDIVSWNSLLDGYVKSGRVDECRRVFDEMPCR 208
           SWN+++D YVK  EM    R VFD +   D++SWN++++GY   G++DE +R+FDEMP R
Sbjct: 263 SWNAMIDGYVKHVEMGHA-RMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPER 321

Query: 209 DTVSWTMMLVGCVNAGLLSEARYVFDEMPERNVVSWSAMISGYVKDGCWKVALGLFKEMQ 388
           + VSW  ML G V  G + +A  +F EMP R+VVSW++M++ Y + G    AL LF +M+
Sbjct: 322 NLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMR 381

Query: 389 VVGVLADKVMLTSVLSACASLGALDQGCWIHSYIDKHGIEVD 514
            VGV   +  + S+LSACA LGALD+G  +H+YI+ + IEV+
Sbjct: 382 AVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVN 423



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 51/213 (23%)
 Frame = +2

Query: 29  SWNSLMDFYVKSGEMASVVRRVFDGIENPDIVSWNSLLDGYVKSGRVDECRRVFDEM--- 199
           SWNS++  +VK G +      +F  +   D+VSWNS+L  Y + G+ +E   +FD+M   
Sbjct: 325 SWNSMLAGFVKCGNVEDAFG-LFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAV 383

Query: 200 ---PCRDTVSWTMMLVGCVNAGLLSE---------------------------------- 268
              P   TV    +L  C + G L +                                  
Sbjct: 384 GVKPTEATV--VSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKIS 441

Query: 269 -ARYVFDEMPERNVVSWSAMISGYVKDGCWKVALGLFKEMQVVGVLADKVMLTSVLSACA 445
            A  VF+ M  ++V++W+ +I+G    G  K A  LFKEM+  GV  + +   ++LSAC+
Sbjct: 442 LATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACS 501

Query: 446 SLGALDQG-----CWIHSY-----IDKHGIEVD 514
             G +D+G     C   SY     ++ +G  +D
Sbjct: 502 HAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVID 534