BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028244
         (401 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002463774.1| hypothetical protein SORBIDRAFT_01g005940 [S...    60   2e-07
gb|ABA18102.1| zinc knuckle family protein [Olimarabidopsis pumila]    60   2e-07
ref|XP_002875595.1| zinc knuckle family protein [Arabidopsis lyr...    60   2e-07
gb|EEC76291.1| hypothetical protein OsI_13802 [Oryza sativa Indi...    56   3e-06
ref|NP_001051489.1| Os03g0786500 [Oryza sativa Japonica Group] g...    56   3e-06

>ref|XP_002463774.1| hypothetical protein SORBIDRAFT_01g005940 [Sorghum bicolor]
           gi|241917628|gb|EER90772.1| hypothetical protein
           SORBIDRAFT_01g005940 [Sorghum bicolor]
          Length = 366

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 35/124 (28%), Positives = 47/124 (37%), Gaps = 21/124 (16%)
 Frame = +3

Query: 54  CYCRLDASCLHVSRSNDNPGRQYYNCPNWKPGTLKSSNKSQKSHCDFFLWADEA------ 215
           C C      +  S +  NPGR++Y CP    G            C+FF W D        
Sbjct: 140 CPCGAGTCLVLTSNTLKNPGRKFYKCPTRDGG------------CNFFEWCDAPSPAPAN 187

Query: 216 ---------------VLCPCGGGLCKVFGVTGNGKNKKQRYCICPKSDRSKGCGFVYWFD 350
                          +LCPCG G C +   T  GKN  +++  CP +     CGF  W D
Sbjct: 188 ARNNMVLHSETSATDMLCPCGAGTCLIL-TTKTGKNVGRQFFRCPLNQGGGSCGFFKWCD 246

Query: 351 SRTP 362
            + P
Sbjct: 247 EQQP 250


>gb|ABA18102.1| zinc knuckle family protein [Olimarabidopsis pumila]
          Length = 369

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 19/131 (14%)
 Frame = +3

Query: 54  CYCRLDASCLHVSRSNDNPGRQYYNCPNWKPGTLKSSNKSQKSHCDFFLWADEAV----- 218
           C C +    +  S +  NPGR++Y CP          N+ +   C FF W D        
Sbjct: 92  CPCGVGLCLILTSNTQKNPGRKFYKCP----------NREENGGCGFFQWCDAVQSSGTT 141

Query: 219 --------------LCPCGGGLCKVFGVTGNGKNKKQRYCICPKSDRSKGCGFVYWFDSR 356
                          CPCG GLC+V      G+N  +++  CP  + S  CGF  W +  
Sbjct: 142 HSYGNTNDSKFPDHQCPCGAGLCRVL-TAKTGENVGRQFYRCPVFEGS--CGFFKWCNDD 198

Query: 357 TPTSEQSFSST 389
             ++  S+S T
Sbjct: 199 AVSAPTSYSVT 209


>ref|XP_002875595.1| zinc knuckle family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297321433|gb|EFH51854.1| zinc knuckle family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 337

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 37/132 (28%), Positives = 53/132 (40%), Gaps = 20/132 (15%)
 Frame = +3

Query: 54  CYCRLDASCLHVSRSNDNPGRQYYNCPNWKPGTLKSSNKSQKSHCDFFLWADEAV----- 218
           C C +    +  S +  NPGR++Y CP          N+ +   C FF W D        
Sbjct: 95  CPCGVGLCLVLTSTTPKNPGRKFYKCP----------NREENGGCGFFQWCDAVQSSGTT 144

Query: 219 ---------------LCPCGGGLCKVFGVTGNGKNKKQRYCICPKSDRSKGCGFVYWFDS 353
                           CPCG GLC+V      G+N  +++  CP  + S  CGF  W + 
Sbjct: 145 THSYGNTNDSKFPDHQCPCGAGLCRVL-TAKTGENVGRQFYRCPVFEGS--CGFFKWCND 201

Query: 354 RTPTSEQSFSST 389
              +S  S+S T
Sbjct: 202 NAVSSPTSYSVT 213


>gb|EEC76291.1| hypothetical protein OsI_13802 [Oryza sativa Indica Group]
          Length = 384

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 21/122 (17%)
 Frame = +3

Query: 54  CYCRLDASCLHVSRSNDNPGRQYYNCPNWKPGTLKSSNKSQKSHCDFFLWADEA------ 215
           C C   +  +  S +  NPGR++Y CP    G            C++F W D        
Sbjct: 163 CPCGAGSCLVLTSNTPRNPGRKFYRCPMRDNGG-----------CNYFEWCDNPSPGPAN 211

Query: 216 ---------------VLCPCGGGLCKVFGVTGNGKNKKQRYCICPKSDRSKGCGFVYWFD 350
                          +LCPCG G C +   T  GKN  +++  CP +     CG+  W D
Sbjct: 212 VSSNTVFQSDTSVAHMLCPCGAGACLIL-TTKTGKNVGRQFYRCPANQGGSSCGYFKWCD 270

Query: 351 SR 356
            +
Sbjct: 271 EQ 272


>ref|NP_001051489.1| Os03g0786500 [Oryza sativa Japonica Group]
           gi|50355715|gb|AAT75240.1| putative DNA-binding protein
           [Oryza sativa Japonica Group]
           gi|108711439|gb|ABF99234.1| GRF zinc finger family
           protein, expressed [Oryza sativa Japonica Group]
           gi|113549960|dbj|BAF13403.1| Os03g0786500 [Oryza sativa
           Japonica Group] gi|215741242|dbj|BAG97737.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|222625927|gb|EEE60059.1| hypothetical protein
           OsJ_12863 [Oryza sativa Japonica Group]
          Length = 384

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 21/122 (17%)
 Frame = +3

Query: 54  CYCRLDASCLHVSRSNDNPGRQYYNCPNWKPGTLKSSNKSQKSHCDFFLWADEA------ 215
           C C   +  +  S +  NPGR++Y CP    G            C++F W D        
Sbjct: 163 CPCGAGSCLVLTSNTPRNPGRKFYRCPMRDNGG-----------CNYFEWCDNPSPGPAN 211

Query: 216 ---------------VLCPCGGGLCKVFGVTGNGKNKKQRYCICPKSDRSKGCGFVYWFD 350
                          +LCPCG G C +   T  GKN  +++  CP +     CG+  W D
Sbjct: 212 VSGNTVFQSDTSVAHMLCPCGAGACLIL-TTKTGKNVGRQFYRCPANQGGSSCGYFKWCD 270

Query: 351 SR 356
            +
Sbjct: 271 EQ 272