BLASTX nr result

ID: Coptis21_contig00028224 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028224
         (1436 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281453.1| PREDICTED: uncharacterized protein LOC100252...   189   2e-45
ref|XP_002516555.1| conserved hypothetical protein [Ricinus comm...   186   1e-44
ref|XP_004136217.1| PREDICTED: U-box domain-containing protein 2...   176   1e-41
ref|NP_196716.1| ARM repeat-containing protein-like protein [Ara...   169   2e-39
ref|XP_002873519.1| hypothetical protein ARALYDRAFT_487992 [Arab...   166   1e-38

>ref|XP_002281453.1| PREDICTED: uncharacterized protein LOC100252675 [Vitis vinifera]
          Length = 344

 Score =  189 bits (479), Expect = 2e-45
 Identities = 120/262 (45%), Positives = 147/262 (56%), Gaps = 15/262 (5%)
 Frame = +3

Query: 504  FTQWRFPIPESPSLHCLPQQPESTSNM-------------PKPPIPSMT-LTELFHVAEI 641
            FTQWRFP+P S  LH    QP S S+              P PP+ ++  L ELFHVAE+
Sbjct: 91   FTQWRFPLPNSLILH--HHQPPSQSHPSHTQISPQTDHPPPSPPLIAVANLEELFHVAEL 148

Query: 642  QLSADSYNSRLSSVHLLERSLVPNLPANGPENPTCPLPVMKGLVGLVKDIAGAKPATKVL 821
            QLS  S   +L+++ LLERSLVP   A G     CP  VM+G+VG +KD AGA+PATKVL
Sbjct: 149  QLSTGSDVEKLAALQLLERSLVP---AAGGGEEACPAAVMRGVVGCLKDRAGARPATKVL 205

Query: 822  LALCLFEPNRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTVPEGAAEVRDHALG 1001
            LALCL E NRH                                 CTV EGAAE+R HAL 
Sbjct: 206  LALCLAEGNRHVAVEAGAVAEVVEAMSEMEGAVAERALAALELMCTVAEGAAELRAHALS 265

Query: 1002 VPMMVQMMGKMNGRGKESAISVLSVIFSGGPGSRXXXXXXXXXXXXXXXXMQGECSVRGR 1181
            VPMM+ MM  M GRGKE AIS+L+VI+    G+                 +QG+CS RG+
Sbjct: 266  VPMMISMMESMAGRGKECAISILAVIYI---GAGDQAPPSEEVARAVALALQGDCSARGK 322

Query: 1182 RKGAQLLKCL-ENGRLDLSEVG 1244
            RKGAQLL+ L ENGRL+L++ G
Sbjct: 323  RKGAQLLRALQENGRLELTQEG 344


>ref|XP_002516555.1| conserved hypothetical protein [Ricinus communis]
            gi|223544375|gb|EEF45896.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 373

 Score =  186 bits (473), Expect = 1e-44
 Identities = 115/252 (45%), Positives = 144/252 (57%), Gaps = 15/252 (5%)
 Frame = +3

Query: 504  FTQWRFPIPESPSLH--CLPQ-QPESTSNMPKPPIPSMTLTELFHVAEIQLSADSYNSRL 674
            FTQW+FP+  SP LH    PQ +P+ST  +P PPI S  L E+FH AE+QLS  S + +L
Sbjct: 92   FTQWKFPLVTSP-LHPESDPQTKPDSTIPLP-PPINSTKLQEVFHAAELQLSGGSEHEKL 149

Query: 675  SSVHLLERSLVPNLPANGPENPTCPLPVMKGLVGLVKDIAGAKPATKVLLALCLFEPNRH 854
            +S+HLLERSLVPN P++      CP  +M+ LV  +K+ AGAKPATK+LLALCL E NRH
Sbjct: 150  ASLHLLERSLVPNPPSHS----VCPPQLMRALVANLKNKAGAKPATKILLALCLAEANRH 205

Query: 855  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTVPEGAAEVRDHALGVPMMVQMMGKM 1034
                                             CTV EGAAE+R HAL VP+MV MMGK+
Sbjct: 206  VAVEAGAVGTIIEVVMELEAPAAERALAALELTCTVEEGAAELRTHALAVPVMVAMMGKV 265

Query: 1035 NGRGKESAISVLSVIFSGGPGS------------RXXXXXXXXXXXXXXXXMQGECSVRG 1178
            +GRGKE AIS L+V++ GG G             +                +QG+C+ RG
Sbjct: 266  SGRGKEYAISALAVVYGGGGGEGGGGLVAVDEEVQVQHAPPEEVARAVVLALQGDCTARG 325

Query: 1179 RRKGAQLLKCLE 1214
            RRKG QLLK LE
Sbjct: 326  RRKGHQLLKALE 337


>ref|XP_004136217.1| PREDICTED: U-box domain-containing protein 26-like [Cucumis sativus]
            gi|449534015|ref|XP_004173965.1| PREDICTED: U-box
            domain-containing protein 26-like [Cucumis sativus]
          Length = 324

 Score =  176 bits (446), Expect = 1e-41
 Identities = 124/330 (37%), Positives = 152/330 (46%), Gaps = 10/330 (3%)
 Frame = +3

Query: 270  MKTHNAKIKNPPRPLFSCGIFSYCTQTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
            M+TH  K+K     LFSCG F +CT++V                                
Sbjct: 1    MRTHQPKLKTQ---LFSCGFFRHCTRSVLSPTASHSPALPSLPSASDQPPPPPSRRPPLP 57

Query: 450  XXXXXXXXXXXXXXXXXXFTQWRFPIPESPSLHCLPQ--QPESTSNMPKP-----PIPSM 608
                              FTQWRFP+P SP     P    P ST ++P P     PI + 
Sbjct: 58   DSESSSSSASQS------FTQWRFPLPHSPIFTQQPSISDPPSTFSIPPPDPLPPPISAS 111

Query: 609  TLTELFHVAEIQLSADSYNSRLSSVHLLERSLVPNLPANGPENPTCPLPVMKGLVGLVKD 788
             L E+  VAE+QLS+ S + RL+++ LLERSLVPN   +      C   +M+GL+     
Sbjct: 112  ALKEILQVAELQLSSASDSDRLAALQLLERSLVPNPSLDSD----CTPELMRGLIESFNI 167

Query: 789  IAGAKPATKVLLALCLFEPNRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTVPE 968
              G+KPATK+LLALCL E NRH                                 CTV E
Sbjct: 168  KTGSKPATKILLALCLAEGNRHVAVEAGAVGAVIESLPEMEDAAAERALASLELMCTVAE 227

Query: 969  GAAEVRDHALGVPMMVQMMGKMNGRGKESAISVLSVIFSGGPGSR---XXXXXXXXXXXX 1139
            GAAEVR HAL VP MV MMG+M  RGKESAISVL VIF  G  S                
Sbjct: 228  GAAEVRSHALSVPAMVTMMGRMAARGKESAISVLGVIFDSGVSSEAKSGVTAPPEEVARA 287

Query: 1140 XXXXMQGECSVRGRRKGAQLLKCLENGRLD 1229
                +QG+ SVRGRRKGA+LLK L+  + D
Sbjct: 288  VVLALQGDSSVRGRRKGARLLKTLQEQQAD 317


>ref|NP_196716.1| ARM repeat-containing protein-like protein [Arabidopsis thaliana]
            gi|7573412|emb|CAB87715.1| putative protein [Arabidopsis
            thaliana] gi|27754693|gb|AAO22790.1| unknown protein
            [Arabidopsis thaliana] gi|28394025|gb|AAO42420.1| unknown
            protein [Arabidopsis thaliana]
            gi|332004311|gb|AED91694.1| ARM repeat-containing
            protein-like protein [Arabidopsis thaliana]
          Length = 314

 Score =  169 bits (427), Expect = 2e-39
 Identities = 118/327 (36%), Positives = 154/327 (47%), Gaps = 12/327 (3%)
 Frame = +3

Query: 300  PPRPLFSCGIFSYCTQTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 479
            PPRPLFSCG F  CTQ+V                                          
Sbjct: 13   PPRPLFSCGFFRRCTQSVLSPTSPHQQQPRRKATTTSSSSSSSSTSTSQS---------- 62

Query: 480  XXXXXXXXFTQWRFP--IPESPSLHCLPQQPESTSNMPKPPIP-SMTLTELFHVAEIQLS 650
                    FTQWRFP  + ++PS    P  P      P PP+P + TL E F +AE+ L+
Sbjct: 63   --------FTQWRFPHHLDQTPSTAPPPPHPPP----PPPPLPVTTTLQETFQIAELHLT 110

Query: 651  ADSYNSRLSSVHLLERSLVPNLPANGPENPTCPLPVMKGLVGLVKD---IAGAKPATKVL 821
            + S + +L ++ LLER +VP+ P++    PTCP  +M+GLV  ++    I  AK  TK+L
Sbjct: 111  SVSESDKLLALQLLERVVVPDPPSD----PTCPPGLMRGLVSCLRSNNKIVTAKYVTKIL 166

Query: 822  LALCLFEPNRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTVPEGAAEVRDHALG 1001
            LALCL E NRH                                 CT  EGAAEVR HA+ 
Sbjct: 167  LALCLAEGNRHVAVEAGAARAVVETAAGLEISAVERALAALELMCTTAEGAAEVRAHAMT 226

Query: 1002 VPMMVQMMGKMNGRGKESAISVLSVIF-----SGGPGSRXXXXXXXXXXXXXXXXMQGEC 1166
            VP MV +M ++ GRG+E AIS+LSV++      G  G                  ++GEC
Sbjct: 227  VPAMVAVMARLAGRGREYAISILSVVYGKGGEGGDSGEEIAVAPAEEVARAVALALEGEC 286

Query: 1167 SVRGRRKGAQLLKCLEN-GRLDLSEVG 1244
            + RG+RKGAQLLK LE  GRLDLS+ G
Sbjct: 287  TARGKRKGAQLLKTLEEYGRLDLSQNG 313


>ref|XP_002873519.1| hypothetical protein ARALYDRAFT_487992 [Arabidopsis lyrata subsp.
            lyrata] gi|297319356|gb|EFH49778.1| hypothetical protein
            ARALYDRAFT_487992 [Arabidopsis lyrata subsp. lyrata]
          Length = 313

 Score =  166 bits (421), Expect = 1e-38
 Identities = 116/325 (35%), Positives = 150/325 (46%), Gaps = 10/325 (3%)
 Frame = +3

Query: 300  PPRPLFSCGIFSYCTQTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 479
            PPRPLFSCG F  CTQ+V                                          
Sbjct: 13   PPRPLFSCGFFRRCTQSVLSPTSPHQQQPRRKPTTTSSSSSSSSTSTSQS---------- 62

Query: 480  XXXXXXXXFTQWRFPIPESPSLHCLPQQPESTSNMPKPPIP-SMTLTELFHVAEIQLSAD 656
                    FTQWRFP    P+    P  P      P PP+P + TL E F +AE+ L++ 
Sbjct: 63   --------FTQWRFPHHLDPTPSTAPPPPPPP---PPPPLPVTTTLQETFQIAELHLTSV 111

Query: 657  SYNSRLSSVHLLERSLVPNLPANGPENPTCPLPVMKGLVGLVKD---IAGAKPATKVLLA 827
            S + +L ++ LLER +VP+ P++    PTCP  +M+ LV  ++    I  AK  TK+LLA
Sbjct: 112  SESDKLLALQLLERVVVPDPPSD----PTCPPGLMRCLVSCLRSNNKIVTAKYVTKILLA 167

Query: 828  LCLFEPNRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTVPEGAAEVRDHALGVP 1007
            LCL E NRH                                 CT  EGAAEVR HA+ VP
Sbjct: 168  LCLAEGNRHVAVEAGAARAVIETAAGLEISAVERALAALELMCTTAEGAAEVRGHAMTVP 227

Query: 1008 MMVQMMGKMNGRGKESAISVLSVIF-----SGGPGSRXXXXXXXXXXXXXXXXMQGECSV 1172
             MV +M ++ GRG+E AIS+LS+++      G  G                  ++GEC+ 
Sbjct: 228  AMVAVMARLAGRGREYAISILSIVYGKAGGGGDSGEEIAVAPAEEVARAVALALEGECTA 287

Query: 1173 RGRRKGAQLLKCLEN-GRLDLSEVG 1244
            RGRRKGAQLLK LE  GRLDLS+ G
Sbjct: 288  RGRRKGAQLLKTLEEYGRLDLSQNG 312


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