BLASTX nr result
ID: Coptis21_contig00028182
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00028182 (459 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002279834.1| PREDICTED: chlorophyll a-b binding protein C... 75 6e-17 ref|XP_003562892.1| PREDICTED: chlorophyll a-b binding protein C... 73 3e-16 pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Har... 69 4e-15 prf||1908421A light-harvesting complex IIa protein 76 3e-12 gb|ABG73415.1| chloroplast pigment-binding protein CP29 [Nicotia... 74 9e-12 >ref|XP_002279834.1| PREDICTED: chlorophyll a-b binding protein CP29.2, chloroplastic [Vitis vinifera] gi|147784938|emb|CAN77492.1| hypothetical protein VITISV_010727 [Vitis vinifera] Length = 288 Score = 74.7 bits (182), Expect(2) = 6e-17 Identities = 37/61 (60%), Positives = 46/61 (75%), Gaps = 3/61 (4%) Frame = +3 Query: 174 GTLVGRYGFDLFGLGKPAD*I---FAILFGHLANNLAGDIIGTKFEVADIKSTPFQPYRS 344 GTLVG YGFD FGLGKPA+ + + L +LA N+AGD+IGT+FE ++KSTPFQPY Sbjct: 68 GTLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNIAGDVIGTRFEGGEVKSTPFQPYTE 127 Query: 345 V 347 V Sbjct: 128 V 128 Score = 37.4 bits (85), Expect(2) = 6e-17 Identities = 17/35 (48%), Positives = 19/35 (54%) Frame = +1 Query: 67 FGFXXXXXXXXXXXXXITDRPLWFSGAKAPECLDG 171 FGF ++DRPLWF GA APE LDG Sbjct: 34 FGFGRKKAPAKKAAKRVSDRPLWFPGAVAPEWLDG 68 >ref|XP_003562892.1| PREDICTED: chlorophyll a-b binding protein CP29.2, chloroplastic-like [Brachypodium distachyon] Length = 288 Score = 72.8 bits (177), Expect(2) = 3e-16 Identities = 39/61 (63%), Positives = 45/61 (73%), Gaps = 3/61 (4%) Frame = +3 Query: 174 GTLVGRYGFDLFGLGKPAD*IFA---ILFGHLANNLAGDIIGTKFEVADIKSTPFQPYRS 344 GTLVG YGFD FGLGKPA+ + L +LA NLAG++IGT+FE ADIKSTP QPY Sbjct: 69 GTLVGDYGFDPFGLGKPAEYLQYDPDSLDQNLAQNLAGEVIGTRFEDADIKSTPLQPYAE 128 Query: 345 V 347 V Sbjct: 129 V 129 Score = 37.0 bits (84), Expect(2) = 3e-16 Identities = 15/18 (83%), Positives = 16/18 (88%) Frame = +1 Query: 118 TDRPLWFSGAKAPECLDG 171 TDRPLWF GA+APE LDG Sbjct: 52 TDRPLWFPGAQAPEYLDG 69 >pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting Complex Cp29 At 2.80 Angstrom Resolution Length = 243 Score = 68.6 bits (166), Expect(2) = 4e-15 Identities = 37/61 (60%), Positives = 44/61 (72%), Gaps = 3/61 (4%) Frame = +3 Query: 174 GTLVGRYGFDLFGLGKPAD*I---FAILFGHLANNLAGDIIGTKFEVADIKSTPFQPYRS 344 G+LVG YGFD FGLGKPA+ + + L +LA NLAGDIIGT+ E AD+KST QPY Sbjct: 26 GSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSE 85 Query: 345 V 347 V Sbjct: 86 V 86 Score = 37.4 bits (85), Expect(2) = 4e-15 Identities = 15/18 (83%), Positives = 16/18 (88%) Frame = +1 Query: 118 TDRPLWFSGAKAPECLDG 171 TDRPLW+ GAKAPE LDG Sbjct: 9 TDRPLWYPGAKAPEYLDG 26 >prf||1908421A light-harvesting complex IIa protein Length = 286 Score = 75.9 bits (185), Expect = 3e-12 Identities = 40/61 (65%), Positives = 46/61 (75%), Gaps = 3/61 (4%) Frame = +3 Query: 174 GTLVGRYGFDLFGLGKPAD*I---FAILFGHLANNLAGDIIGTKFEVADIKSTPFQPYRS 344 GTLVG YGFD FGLGKPA+ + L +LA NLAG+IIGT+FE AD+KSTPFQPY Sbjct: 66 GTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAGEIIGTRFEDADVKSTPFQPYAE 125 Query: 345 V 347 V Sbjct: 126 V 126 Score = 49.7 bits (117), Expect(2) = 1e-09 Identities = 27/44 (61%), Positives = 32/44 (72%), Gaps = 1/44 (2%) Frame = +2 Query: 314 KINSISTIQECEY-PGRWAMLAMTLGALTVESIIGVTWQDARKV 442 ++ + +ECE GRWAMLA TLGALTVE + GVTWQDA KV Sbjct: 125 EVFGLQRFRECELIHGRWAMLA-TLGALTVEWLTGVTWQDAGKV 167 Score = 37.7 bits (86), Expect(2) = 1e-09 Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Frame = +1 Query: 118 TDRPLWFSGAKAPECLDGPGLW*VVTDLTCSV*G-NQLIEYLQFYLDT 258 TDRPLWF GA+APE LDG +V D G + EYLQ+ +D+ Sbjct: 49 TDRPLWFPGAQAPEYLDGT----LVGDYGFDPFGLGKPAEYLQYDVDS 92 >gb|ABG73415.1| chloroplast pigment-binding protein CP29 [Nicotiana tabacum] Length = 285 Score = 74.3 bits (181), Expect = 9e-12 Identities = 38/61 (62%), Positives = 46/61 (75%), Gaps = 3/61 (4%) Frame = +3 Query: 174 GTLVGRYGFDLFGLGKPAD*I---FAILFGHLANNLAGDIIGTKFEVADIKSTPFQPYRS 344 G+LVG YGFD FGLGKPA+ + L +LA NLAGD+IGT+ E+AD+KSTPFQPY Sbjct: 63 GSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTELADVKSTPFQPYSE 122 Query: 345 V 347 V Sbjct: 123 V 123 Score = 49.3 bits (116), Expect(2) = 1e-10 Identities = 26/44 (59%), Positives = 32/44 (72%), Gaps = 1/44 (2%) Frame = +2 Query: 314 KINSISTIQECEY-PGRWAMLAMTLGALTVESIIGVTWQDARKV 442 ++ + +ECE GRWAMLA TLGALTVE + G+TWQDA KV Sbjct: 122 EVFGLQRFRECELIHGRWAMLA-TLGALTVEWLTGITWQDAGKV 164 Score = 41.6 bits (96), Expect(2) = 1e-10 Identities = 28/65 (43%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Frame = +1 Query: 67 FGFXXXXXXXXXXXXXITDRPLWFSGAKAPECLDGPGLW*VVTDLTCSV*G-NQLIEYLQ 243 FGF I DRPLW+ GAKAPE LDG +V D G + EYLQ Sbjct: 29 FGFGKKAAPKKAPKRQIPDRPLWYPGAKAPEYLDGS----LVGDYGFDPFGLGKPAEYLQ 84 Query: 244 FYLDT 258 F LD+ Sbjct: 85 FDLDS 89