BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028182
         (459 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279834.1| PREDICTED: chlorophyll a-b binding protein C...    75   6e-17
ref|XP_003562892.1| PREDICTED: chlorophyll a-b binding protein C...    73   3e-16
pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Har...    69   4e-15
prf||1908421A light-harvesting complex IIa protein                     76   3e-12
gb|ABG73415.1| chloroplast pigment-binding protein CP29 [Nicotia...    74   9e-12

>ref|XP_002279834.1| PREDICTED: chlorophyll a-b binding protein CP29.2, chloroplastic
           [Vitis vinifera] gi|147784938|emb|CAN77492.1|
           hypothetical protein VITISV_010727 [Vitis vinifera]
          Length = 288

 Score = 74.7 bits (182), Expect(2) = 6e-17
 Identities = 37/61 (60%), Positives = 46/61 (75%), Gaps = 3/61 (4%)
 Frame = +3

Query: 174 GTLVGRYGFDLFGLGKPAD*I---FAILFGHLANNLAGDIIGTKFEVADIKSTPFQPYRS 344
           GTLVG YGFD FGLGKPA+ +   +  L  +LA N+AGD+IGT+FE  ++KSTPFQPY  
Sbjct: 68  GTLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNIAGDVIGTRFEGGEVKSTPFQPYTE 127

Query: 345 V 347
           V
Sbjct: 128 V 128



 Score = 37.4 bits (85), Expect(2) = 6e-17
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = +1

Query: 67  FGFXXXXXXXXXXXXXITDRPLWFSGAKAPECLDG 171
           FGF             ++DRPLWF GA APE LDG
Sbjct: 34  FGFGRKKAPAKKAAKRVSDRPLWFPGAVAPEWLDG 68


>ref|XP_003562892.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
           chloroplastic-like [Brachypodium distachyon]
          Length = 288

 Score = 72.8 bits (177), Expect(2) = 3e-16
 Identities = 39/61 (63%), Positives = 45/61 (73%), Gaps = 3/61 (4%)
 Frame = +3

Query: 174 GTLVGRYGFDLFGLGKPAD*IFA---ILFGHLANNLAGDIIGTKFEVADIKSTPFQPYRS 344
           GTLVG YGFD FGLGKPA+ +      L  +LA NLAG++IGT+FE ADIKSTP QPY  
Sbjct: 69  GTLVGDYGFDPFGLGKPAEYLQYDPDSLDQNLAQNLAGEVIGTRFEDADIKSTPLQPYAE 128

Query: 345 V 347
           V
Sbjct: 129 V 129



 Score = 37.0 bits (84), Expect(2) = 3e-16
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +1

Query: 118 TDRPLWFSGAKAPECLDG 171
           TDRPLWF GA+APE LDG
Sbjct: 52  TDRPLWFPGAQAPEYLDG 69


>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
           Complex Cp29 At 2.80 Angstrom Resolution
          Length = 243

 Score = 68.6 bits (166), Expect(2) = 4e-15
 Identities = 37/61 (60%), Positives = 44/61 (72%), Gaps = 3/61 (4%)
 Frame = +3

Query: 174 GTLVGRYGFDLFGLGKPAD*I---FAILFGHLANNLAGDIIGTKFEVADIKSTPFQPYRS 344
           G+LVG YGFD FGLGKPA+ +   +  L  +LA NLAGDIIGT+ E AD+KST  QPY  
Sbjct: 26  GSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSE 85

Query: 345 V 347
           V
Sbjct: 86  V 86



 Score = 37.4 bits (85), Expect(2) = 4e-15
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +1

Query: 118 TDRPLWFSGAKAPECLDG 171
           TDRPLW+ GAKAPE LDG
Sbjct: 9   TDRPLWYPGAKAPEYLDG 26


>prf||1908421A light-harvesting complex IIa protein
          Length = 286

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 40/61 (65%), Positives = 46/61 (75%), Gaps = 3/61 (4%)
 Frame = +3

Query: 174 GTLVGRYGFDLFGLGKPAD*I---FAILFGHLANNLAGDIIGTKFEVADIKSTPFQPYRS 344
           GTLVG YGFD FGLGKPA+ +      L  +LA NLAG+IIGT+FE AD+KSTPFQPY  
Sbjct: 66  GTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAGEIIGTRFEDADVKSTPFQPYAE 125

Query: 345 V 347
           V
Sbjct: 126 V 126



 Score = 49.7 bits (117), Expect(2) = 1e-09
 Identities = 27/44 (61%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
 Frame = +2

Query: 314 KINSISTIQECEY-PGRWAMLAMTLGALTVESIIGVTWQDARKV 442
           ++  +   +ECE   GRWAMLA TLGALTVE + GVTWQDA KV
Sbjct: 125 EVFGLQRFRECELIHGRWAMLA-TLGALTVEWLTGVTWQDAGKV 167



 Score = 37.7 bits (86), Expect(2) = 1e-09
 Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +1

Query: 118 TDRPLWFSGAKAPECLDGPGLW*VVTDLTCSV*G-NQLIEYLQFYLDT 258
           TDRPLWF GA+APE LDG     +V D      G  +  EYLQ+ +D+
Sbjct: 49  TDRPLWFPGAQAPEYLDGT----LVGDYGFDPFGLGKPAEYLQYDVDS 92


>gb|ABG73415.1| chloroplast pigment-binding protein CP29 [Nicotiana tabacum]
          Length = 285

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 38/61 (62%), Positives = 46/61 (75%), Gaps = 3/61 (4%)
 Frame = +3

Query: 174 GTLVGRYGFDLFGLGKPAD*I---FAILFGHLANNLAGDIIGTKFEVADIKSTPFQPYRS 344
           G+LVG YGFD FGLGKPA+ +      L  +LA NLAGD+IGT+ E+AD+KSTPFQPY  
Sbjct: 63  GSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTELADVKSTPFQPYSE 122

Query: 345 V 347
           V
Sbjct: 123 V 123



 Score = 49.3 bits (116), Expect(2) = 1e-10
 Identities = 26/44 (59%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
 Frame = +2

Query: 314 KINSISTIQECEY-PGRWAMLAMTLGALTVESIIGVTWQDARKV 442
           ++  +   +ECE   GRWAMLA TLGALTVE + G+TWQDA KV
Sbjct: 122 EVFGLQRFRECELIHGRWAMLA-TLGALTVEWLTGITWQDAGKV 164



 Score = 41.6 bits (96), Expect(2) = 1e-10
 Identities = 28/65 (43%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 67  FGFXXXXXXXXXXXXXITDRPLWFSGAKAPECLDGPGLW*VVTDLTCSV*G-NQLIEYLQ 243
           FGF             I DRPLW+ GAKAPE LDG     +V D      G  +  EYLQ
Sbjct: 29  FGFGKKAAPKKAPKRQIPDRPLWYPGAKAPEYLDGS----LVGDYGFDPFGLGKPAEYLQ 84

Query: 244 FYLDT 258
           F LD+
Sbjct: 85  FDLDS 89