BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028167
         (507 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   166   2e-39
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   159   2e-37
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   145   3e-33
gb|ABD96948.1| hypothetical protein [Cleome spinosa]                  129   3e-28
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...   122   2e-26

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score =  166 bits (419), Expect = 2e-39
 Identities = 73/167 (43%), Positives = 114/167 (68%)
 Frame = -2

Query: 506  SELMNKLNRKSFGGNVAIKVDISQAFDTMSWEFVCHVMSKMGFSLSWINWIRAIMESAKM 327
            SE +N L ++ +GGNVA+KVDI++AFDT+ W F+  V+ + GF   +++WI  I++SA++
Sbjct: 568  SEAINLLEKRQYGGNVALKVDIAKAFDTLDWNFLLAVLQRFGFDEKFVHWILVILQSARL 627

Query: 326  SVLINGGPVGYFSVGRGLKQGDPLSPLLFALAEDCLSKGINDLVDRRIIMPMLYVKGMPA 147
            SVL+NG  VG+F+   G++QGDPLSPLLF L E+ LS+ ++       ++PM Y +G+  
Sbjct: 628  SVLVNGKAVGFFTCSHGVRQGDPLSPLLFCLVEEVLSRALSMAATDGQLIPMSYCRGVSF 687

Query: 146  PSHLLFADDIIIFTNGQIINLKAIAKFLQNYERASGQTMNKNKSKLF 6
            P+H+L+ADD++IF  G   N++ + K    Y   SGQ +N  KS+ F
Sbjct: 688  PTHILYADDVLIFCTGTKRNIRRLIKIFSQYSEVSGQLINNAKSRFF 734


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  159 bits (403), Expect = 2e-37
 Identities = 76/138 (55%), Positives = 104/138 (75%)
 Frame = -2

Query: 506 SELMNKLNRKSFGGNVAIKVDISQAFDTMSWEFVCHVMSKMGFSLSWINWIRAIMESAKM 327
           SE +N L++KSFGGN+A KVDIS+AFDT++W+F+  V+ + GFS ++ NWI AI++SAK+
Sbjct: 242 SEAINMLDQKSFGGNLAFKVDISKAFDTLNWKFLLKVLKQFGFSETFCNWIDAILQSAKL 301

Query: 326 SVLINGGPVGYFSVGRGLKQGDPLSPLLFALAEDCLSKGINDLVDRRIIMPMLYVKGMPA 147
           S+ ING   GYFS  RG++QGDPLSPLLF LAED LS+ +  LV++  +  M   +    
Sbjct: 302 SICINGSQQGYFSCSRGVRQGDPLSPLLFCLAEDVLSRSLTKLVEQGKLKQMRGTRNCLV 361

Query: 146 PSHLLFADDIIIFTNGQI 93
           PSH+L+ADDI+IF NG I
Sbjct: 362 PSHILYADDIMIFCNGGI 379


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  145 bits (366), Expect = 3e-33
 Identities = 67/167 (40%), Positives = 108/167 (64%)
 Frame = -2

Query: 506 SELMNKLNRKSFGGNVAIKVDISQAFDTMSWEFVCHVMSKMGFSLSWINWIRAIMESAKM 327
           SE +N L+ KSFGGN+A+K+D+++AFDT++W+F+  V+   GF+  + NWI+ I+ S+KM
Sbjct: 303 SEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSSKM 362

Query: 326 SVLINGGPVGYFSVGRGLKQGDPLSPLLFALAEDCLSKGINDLVDRRIIMPMLYVKGMPA 147
            + +NG   G+F+  RG++QGDPLSPLLF + E+ LS+ I+ L D+ +I  +   +    
Sbjct: 363 FISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCL 422

Query: 146 PSHLLFADDIIIFTNGQIINLKAIAKFLQNYERASGQTMNKNKSKLF 6
           P H  + DD+++F   ++ +L  +      Y   SGQ MN  KS +F
Sbjct: 423 PFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIF 469


>gb|ABD96948.1| hypothetical protein [Cleome spinosa]
          Length = 539

 Score =  129 bits (324), Expect = 3e-28
 Identities = 65/170 (38%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
 Frame = -2

Query: 506 SELMNKLNRKSFGGNVAIKVDISQAFDTMSWEFVCHVMSKMGFSLSWINWIRAIMESAKM 327
           +EL+++ NR +      +K+D+ +AFDT+SWEF+  +M  +    +++ W++  ME+ K 
Sbjct: 26  TELVHEYNRPNTSKRAMLKIDLRKAFDTVSWEFITKIMQALNLPRTFVTWVKVCMETPKF 85

Query: 326 SVLINGGPVGYFSVGRGLKQGDPLSPLLFALAEDCLSKGINDLV--DRRIIMPMLYVKGM 153
           SV ING   GYF   RGL+QGDPLSP LF ++ + LS+ ++      R  + P  +    
Sbjct: 86  SVSINGELAGYFKGRRGLRQGDPLSPYLFIMSMEVLSRMLDRCAAESRLSLHPKCH---S 142

Query: 152 PAPSHLLFADDIIIFTNGQIINLKAIAKFLQNYERASGQTMNKNKSKLFL 3
           P  +HL FADDI+IFT+G+  +L  +   L ++ RASG  +N  K+++FL
Sbjct: 143 PVITHLAFADDIMIFTSGETRSLLEVKNTLDSFSRASGLYLNTEKTEIFL 192


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score =  122 bits (307), Expect = 2e-26
 Identities = 65/161 (40%), Positives = 88/161 (54%)
 Frame = -2

Query: 491  KLNRKSFGGNVAIKVDISQAFDTMSWEFVCHVMSKMGFSLSWINWIRAIMESAKMSVLIN 312
            K  R+   G VA+K DIS+A+D + W F+  VM ++GF+  W+ WI   + S    VLIN
Sbjct: 923  KSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLIN 982

Query: 311  GGPVGYFSVGRGLKQGDPLSPLLFALAEDCLSKGINDLVDRRIIMPMLYVKGMPAPSHLL 132
            G P G     RG++QGDPLSP LF    + LS  +      + I  M   K   A SHLL
Sbjct: 983  GSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLL 1042

Query: 131  FADDIIIFTNGQIINLKAIAKFLQNYERASGQTMNKNKSKL 9
            FADD + F      N++ +A   + YE ASGQ +N  KS +
Sbjct: 1043 FADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAKSSI 1083