BLASTX nr result
ID: Coptis21_contig00028167
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00028167 (507 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas... 166 2e-39 gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas... 159 2e-37 gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas... 145 3e-33 gb|ABD96948.1| hypothetical protein [Cleome spinosa] 129 3e-28 gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 122 2e-26 >gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H; Endonuclease/exonuclease/phosphatase [Medicago truncatula] Length = 1246 Score = 166 bits (419), Expect = 2e-39 Identities = 73/167 (43%), Positives = 114/167 (68%) Frame = -2 Query: 506 SELMNKLNRKSFGGNVAIKVDISQAFDTMSWEFVCHVMSKMGFSLSWINWIRAIMESAKM 327 SE +N L ++ +GGNVA+KVDI++AFDT+ W F+ V+ + GF +++WI I++SA++ Sbjct: 568 SEAINLLEKRQYGGNVALKVDIAKAFDTLDWNFLLAVLQRFGFDEKFVHWILVILQSARL 627 Query: 326 SVLINGGPVGYFSVGRGLKQGDPLSPLLFALAEDCLSKGINDLVDRRIIMPMLYVKGMPA 147 SVL+NG VG+F+ G++QGDPLSPLLF L E+ LS+ ++ ++PM Y +G+ Sbjct: 628 SVLVNGKAVGFFTCSHGVRQGDPLSPLLFCLVEEVLSRALSMAATDGQLIPMSYCRGVSF 687 Query: 146 PSHLLFADDIIIFTNGQIINLKAIAKFLQNYERASGQTMNKNKSKLF 6 P+H+L+ADD++IF G N++ + K Y SGQ +N KS+ F Sbjct: 688 PTHILYADDVLIFCTGTKRNIRRLIKIFSQYSEVSGQLINNAKSRFF 734 >gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula] Length = 528 Score = 159 bits (403), Expect = 2e-37 Identities = 76/138 (55%), Positives = 104/138 (75%) Frame = -2 Query: 506 SELMNKLNRKSFGGNVAIKVDISQAFDTMSWEFVCHVMSKMGFSLSWINWIRAIMESAKM 327 SE +N L++KSFGGN+A KVDIS+AFDT++W+F+ V+ + GFS ++ NWI AI++SAK+ Sbjct: 242 SEAINMLDQKSFGGNLAFKVDISKAFDTLNWKFLLKVLKQFGFSETFCNWIDAILQSAKL 301 Query: 326 SVLINGGPVGYFSVGRGLKQGDPLSPLLFALAEDCLSKGINDLVDRRIIMPMLYVKGMPA 147 S+ ING GYFS RG++QGDPLSPLLF LAED LS+ + LV++ + M + Sbjct: 302 SICINGSQQGYFSCSRGVRQGDPLSPLLFCLAEDVLSRSLTKLVEQGKLKQMRGTRNCLV 361 Query: 146 PSHLLFADDIIIFTNGQI 93 PSH+L+ADDI+IF NG I Sbjct: 362 PSHILYADDIMIFCNGGI 379 >gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula] Length = 642 Score = 145 bits (366), Expect = 3e-33 Identities = 67/167 (40%), Positives = 108/167 (64%) Frame = -2 Query: 506 SELMNKLNRKSFGGNVAIKVDISQAFDTMSWEFVCHVMSKMGFSLSWINWIRAIMESAKM 327 SE +N L+ KSFGGN+A+K+D+++AFDT++W+F+ V+ GF+ + NWI+ I+ S+KM Sbjct: 303 SEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSSKM 362 Query: 326 SVLINGGPVGYFSVGRGLKQGDPLSPLLFALAEDCLSKGINDLVDRRIIMPMLYVKGMPA 147 + +NG G+F+ RG++QGDPLSPLLF + E+ LS+ I+ L D+ +I + + Sbjct: 363 FISMNGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCL 422 Query: 146 PSHLLFADDIIIFTNGQIINLKAIAKFLQNYERASGQTMNKNKSKLF 6 P H + DD+++F ++ +L + Y SGQ MN KS +F Sbjct: 423 PFHCFYVDDLMVFCKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIF 469 >gb|ABD96948.1| hypothetical protein [Cleome spinosa] Length = 539 Score = 129 bits (324), Expect = 3e-28 Identities = 65/170 (38%), Positives = 105/170 (61%), Gaps = 2/170 (1%) Frame = -2 Query: 506 SELMNKLNRKSFGGNVAIKVDISQAFDTMSWEFVCHVMSKMGFSLSWINWIRAIMESAKM 327 +EL+++ NR + +K+D+ +AFDT+SWEF+ +M + +++ W++ ME+ K Sbjct: 26 TELVHEYNRPNTSKRAMLKIDLRKAFDTVSWEFITKIMQALNLPRTFVTWVKVCMETPKF 85 Query: 326 SVLINGGPVGYFSVGRGLKQGDPLSPLLFALAEDCLSKGINDLV--DRRIIMPMLYVKGM 153 SV ING GYF RGL+QGDPLSP LF ++ + LS+ ++ R + P + Sbjct: 86 SVSINGELAGYFKGRRGLRQGDPLSPYLFIMSMEVLSRMLDRCAAESRLSLHPKCH---S 142 Query: 152 PAPSHLLFADDIIIFTNGQIINLKAIAKFLQNYERASGQTMNKNKSKLFL 3 P +HL FADDI+IFT+G+ +L + L ++ RASG +N K+++FL Sbjct: 143 PVITHLAFADDIMIFTSGETRSLLEVKNTLDSFSRASGLYLNTEKTEIFL 192 >gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1715 Score = 122 bits (307), Expect = 2e-26 Identities = 65/161 (40%), Positives = 88/161 (54%) Frame = -2 Query: 491 KLNRKSFGGNVAIKVDISQAFDTMSWEFVCHVMSKMGFSLSWINWIRAIMESAKMSVLIN 312 K R+ G VA+K DIS+A+D + W F+ VM ++GF+ W+ WI + S VLIN Sbjct: 923 KSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLIN 982 Query: 311 GGPVGYFSVGRGLKQGDPLSPLLFALAEDCLSKGINDLVDRRIIMPMLYVKGMPAPSHLL 132 G P G RG++QGDPLSP LF + LS + + I M K A SHLL Sbjct: 983 GSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLL 1042 Query: 131 FADDIIIFTNGQIINLKAIAKFLQNYERASGQTMNKNKSKL 9 FADD + F N++ +A + YE ASGQ +N KS + Sbjct: 1043 FADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAKSSI 1083