BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028125
         (408 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal...    84   1e-14
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    78   7e-13
ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|2...    78   9e-13
gb|ABN08700.1| Endonuclease/exonuclease/phosphatase [Medicago tr...    77   1e-12
ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|2...    76   2e-12

>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 910

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 1/129 (0%)
 Frame = +3

Query: 24  IRVCSWNVRGLNDNTRASLMNKFISENKLRCMGFLETKI*VEHFSRITARICPSWTVEHN 203
           ++V  WN+RGLN   R  ++  +I+ N L    FLET +  E+ + + A   P W ++ N
Sbjct: 1   MKVFCWNIRGLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSVLASTLPGWRMDSN 60

Query: 204 YSSHESGRIWFAWDRS-CVAVQKEVEGSQFIHCKVTFLQEGFSCFVTTVYTSNNRQERLT 380
           Y   E GRIW  WD S  V V K  +   F   K+  L + F+  V  VY  N+  +R +
Sbjct: 61  YCCSELGRIWIVWDPSISVLVFKRTDQIMFCSIKIPSLLQSFA--VAFVYGRNSELDRRS 118

Query: 381 LWEELKAIS 407
           LWE++  +S
Sbjct: 119 LWEDILVLS 127


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 40/120 (33%), Positives = 62/120 (51%)
 Frame = +3

Query: 39  WNVRGLNDNTRASLMNKFISENKLRCMGFLETKI*VEHFSRITARICPSWTVEHNYSSHE 218
           WNVRGLN +++ S++ K+I EN  +    +ET++     S++  ++   W++  NY  + 
Sbjct: 6   WNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRVKESKVSQLVGKLFKDWSILTNYEHNR 65

Query: 219 SGRIWFAWDRSCVAVQKEVEGSQFIHCKVTFLQEGFSCFVTTVYTSNNRQERLTLWEELK 398
            GRIW  W R  V +    +  Q + C V         F + VY SN  +ER  LW ELK
Sbjct: 66  RGRIWVLW-RKNVRLSPIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYVEERKVLWSELK 124


>ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|222874875|gb|EEF12006.1|
            predicted protein [Populus trichocarpa]
          Length = 1386

 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 42/129 (32%), Positives = 63/129 (48%)
 Frame = +3

Query: 9    LIFLMIRVCSWNVRGLNDNTRASLMNKFISENKLRCMGFLETKI*VEHFSRITARICPSW 188
            L F MI  C WN+RGLND  + S + + I + ++   G +ET++  ++   +T  +  SW
Sbjct: 802  LYFPMIIGC-WNIRGLNDPIKHSELRRLIHQERIALFGLVETRVKDKNKYNVTQLLLRSW 860

Query: 189  TVEHNYSSHESGRIWFAWDRSCVAVQKEVEGSQFIHCKVTFLQEGFSCFVTTVYTSNNRQ 368
            +  +NY     GRIW  W+   V V       Q IH  VT L    S   + +Y  NN  
Sbjct: 861  SFLYNYDFSCRGRIWVCWNADTVKVDVFGMSDQAIHVSVTILATNISFNTSIIYGDNNAS 920

Query: 369  ERLTLWEEL 395
             R  LW ++
Sbjct: 921  LREALWSDI 929



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 35/116 (30%), Positives = 55/116 (47%)
 Frame = +3

Query: 48  RGLNDNTRASLMNKFISENKLRCMGFLETKI*VEHFSRITARICPSWTVEHNYSSHESGR 227
           RGLND  + S + + I + ++   G +ET++  ++   +T  +  SW+  +NY     GR
Sbjct: 533 RGLNDPIKHSELRRLIHQERIALFGLVETRVKDKNKDNVTQLLLRSWSFLYNYDFSCRGR 592

Query: 228 IWFAWDRSCVAVQKEVEGSQFIHCKVTFLQEGFSCFVTTVYTSNNRQERLTLWEEL 395
           IW  W+   V V       Q IH  VT L    S   + +Y  NN   R  LW ++
Sbjct: 593 IWVCWNADTVKVDVFGMSDQAIHVSVTILATNISFNTSIIYGDNNASLREALWSDI 648


>gb|ABN08700.1| Endonuclease/exonuclease/phosphatase [Medicago truncatula]
          Length = 814

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 43/126 (34%), Positives = 65/126 (51%)
 Frame = +3

Query: 9   LIFLMIRVCSWNVRGLNDNTRASLMNKFISENKLRCMGFLETKI*VEHFSRITARICPSW 188
           L F M  VC WNVRG N   +   +  F+ +NK      +ET+I  + F++I++ I   W
Sbjct: 514 LWFDMKLVC-WNVRGCNKPFKQKEIKNFLLKNKFDMCILVETRIKADKFNKISSMIFKRW 572

Query: 189 TVEHNYSSHESGRIWFAWDRSCVAVQKEVEGSQFIHCKVTFLQEGFSCFVTTVYTSNNRQ 368
            V +NY S  +GRIW +W+ + + V+     +Q IHC+V  L          VY  N  +
Sbjct: 573 PVLNNYDSAANGRIWVSWNPTVLDVKPIASSAQAIHCEVDNLTSSECFNFVAVYAFNTLE 632

Query: 369 ERLTLW 386
           +R  LW
Sbjct: 633 QRKELW 638


>ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|222870351|gb|EEF07482.1|
           predicted protein [Populus trichocarpa]
          Length = 1046

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 40/129 (31%), Positives = 64/129 (49%)
 Frame = +3

Query: 9   LIFLMIRVCSWNVRGLNDNTRASLMNKFISENKLRCMGFLETKI*VEHFSRITARICPSW 188
           L F MI  C WN+RGLND  + S +++ I + ++   G +ET++  ++   ++  +  SW
Sbjct: 451 LYFPMIIGC-WNIRGLNDPIKHSELHRLIHQERITLFGLVETRVKDKNKDNVSQLLLRSW 509

Query: 189 TVEHNYSSHESGRIWFAWDRSCVAVQKEVEGSQFIHCKVTFLQEGFSCFVTTVYTSNNRQ 368
           +  +NY     GRIW  W+   V V       + IH  VT L    S   + +Y  NN  
Sbjct: 510 SFLYNYDFSCRGRIWVCWNADTVKVDVFGMSDEAIHVSVTILATNISFNTSIIYGDNNAS 569

Query: 369 ERLTLWEEL 395
            R  LW ++
Sbjct: 570 LREALWSDI 578