BLASTX nr result
ID: Coptis21_contig00028093
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00028093
(508 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid... 55 2e-16
emb|CAN64680.1| hypothetical protein VITISV_016601 [Vitis vinifera] 60 2e-15
gb|ABA98491.1| retrotransposon protein, putative, unclassified [... 57 3e-15
emb|CAN82456.1| hypothetical protein VITISV_010028 [Vitis vinifera] 57 5e-11
gb|EEE54705.1| hypothetical protein OsJ_02026 [Oryza sativa Japo... 61 1e-07
>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|7267666|emb|CAB78094.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 55.5 bits (132), Expect(3) = 2e-16
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = -2
Query: 417 CNVAYTIISKILANRLKPLLSKFISSNQGTFVPKRSIGDNVRLVHD 280
CNV Y I++KIL RL+P LS+ IS +Q FVP R+I DNV + H+
Sbjct: 451 CNVQYKIVAKILTRRLQPWLSELISLHQSAFVPGRAIADNVLITHE 496
Score = 45.4 bits (106), Expect(3) = 2e-16
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Frame = -3
Query: 227 EMAKA*DRTEWNFLLEILSKLGFSSK*ISYTDFC---QSFTIHLNGSPCNWFQASRGKE- 60
+M+KA DR +WNFL E+L +LGF K I + C S++ +NGSP SRG
Sbjct: 517 DMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQ 576
Query: 59 ----TPYL 48
+PYL
Sbjct: 577 GDPLSPYL 584
Score = 29.3 bits (64), Expect(3) = 2e-16
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -2
Query: 66 QGDPLSPYLFFIVTIDLS 13
QGDPLSPYLF + T LS
Sbjct: 576 QGDPLSPYLFILCTEVLS 593
>emb|CAN64680.1| hypothetical protein VITISV_016601 [Vitis vinifera]
Length = 971
Score = 60.1 bits (144), Expect(3) = 2e-15
Identities = 30/76 (39%), Positives = 49/76 (64%), Gaps = 9/76 (11%)
Frame = -3
Query: 248 KDGVVC-LEMAKA*DRTEWNFLLEILSKLGFSSK*ISYTDFC---QSFTIHLNGSPCNWF 81
+ G++C L++ KA D+ +WNF+L I+ K+GF K I + +C SF++ +NG+P +F
Sbjct: 328 ESGILCKLDIEKAYDKVDWNFILTIMKKMGFGEKWIRWIQWCISTASFSVMINGTPTGFF 387
Query: 80 QASRGKE-----TPYL 48
Q+SRG +PYL
Sbjct: 388 QSSRGLRQGDPLSPYL 403
Score = 38.9 bits (89), Expect(3) = 2e-15
Identities = 18/43 (41%), Positives = 29/43 (67%)
Frame = -2
Query: 405 YTIISKILANRLKPLLSKFISSNQGTFVPKRSIGDNVRLVHDS 277
Y ++K+LANRLK ++ K +S QGTFV R I D + + +++
Sbjct: 277 YKWLAKVLANRLKKVVGKVVSKAQGTFVEGRQILDAMLITNEA 319
Score = 27.3 bits (59), Expect(3) = 2e-15
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -2
Query: 66 QGDPLSPYLFFI 31
QGDPLSPYLF I
Sbjct: 395 QGDPLSPYLFVI 406
>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1621
Score = 56.6 bits (135), Expect(3) = 3e-15
Identities = 31/83 (37%), Positives = 47/83 (56%)
Frame = -2
Query: 486 LTTFLFLRFQKSQTLLVIQLRSSCNVAYTIISKILANRLKPLLSKFISSNQGTFVPKRSI 307
+T L + +K + + ++ S CNV Y ++SK+LANRLK +L IS Q FVP R I
Sbjct: 743 ITIVLIPKVKKPELIKDLRPISLCNVCYKLVSKVLANRLKKILPDVISPAQSAFVPGRLI 802
Query: 306 GDNVRLVHDSPYNLTAWRGKRRG 238
DN+ + + + + R KR G
Sbjct: 803 SDNILIADEMTHYM---RNKRSG 822
Score = 40.4 bits (93), Expect(3) = 3e-15
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Frame = -3
Query: 230 LEMAKA*DRTEWNFLLEILSKLGFSSK*ISYTDFCQS---FTIHLNGSPCNWFQASRGKE 60
L+M+KA DR EW+FL +++ KLGF + ++ C S + I +NG F RG
Sbjct: 831 LDMSKAYDRVEWSFLHDMILKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPGRGLR 890
Query: 59 -----TPYL 48
+PYL
Sbjct: 891 QGDPLSPYL 899
Score = 28.9 bits (63), Expect(3) = 3e-15
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 66 QGDPLSPYLFFIVTIDLSRMLA 1
QGDPLSPYLF + S +L+
Sbjct: 891 QGDPLSPYLFLLCAEGFSALLS 912
>emb|CAN82456.1| hypothetical protein VITISV_010028 [Vitis vinifera]
Length = 4128
Score = 49.3 bits (116), Expect(3) = 5e-11
Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 8/69 (11%)
Frame = -3
Query: 230 LEMAKA*DRTEWNFLLEILSKLGFSSK*ISYTDFCQS---FTIHLNGSPCNWFQASRGKE 60
L++ KA D W+ L+ ++SK+GF K I++ +C S F+I +NG+P ++F+++RG
Sbjct: 1289 LDIEKAFDHVNWDCLVSVMSKMGFGQKWINWISWCISTTNFSILINGTPSDFFRSTRGLR 1348
Query: 59 -----TPYL 48
+PYL
Sbjct: 1349 QGDPLSPYL 1357
Score = 33.5 bits (75), Expect(3) = 5e-11
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -2
Query: 405 YTIISKILANRLKPLLSKFISSNQGTFVPKRSIGDNVRLVHDS 277
Y +++K+LANRLK + + +S Q F+ R I D + +++
Sbjct: 1231 YKLLAKVLANRLKQXIGEVVSEYQHAFIRNRQILDAALIANET 1273
Score = 28.5 bits (62), Expect(3) = 5e-11
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = -2
Query: 66 QGDPLSPYLFFIV 28
QGDPLSPYLF +V
Sbjct: 1349 QGDPLSPYLFLLV 1361
Score = 56.6 bits (135), Expect = 2e-06
Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 8/69 (11%)
Frame = -3
Query: 230 LEMAKA*DRTEWNFLLEILSKLGFSSK*ISYTDFC---QSFTIHLNGSPCNWFQASRGKE 60
+++ KA D WNFL+E++SK+GF + I++ +C SF+I +NGSP +F++SRG
Sbjct: 2983 MDIEKAFDHVNWNFLMEVMSKMGFGHRWINWIKWCCSTTSFSILINGSPSGFFRSSRGLR 3042
Query: 59 -----TPYL 48
+PYL
Sbjct: 3043 QGDPLSPYL 3051
>gb|EEE54705.1| hypothetical protein OsJ_02026 [Oryza sativa Japonica Group]
Length = 644
Score = 60.8 bits (146), Expect = 1e-07
Identities = 52/161 (32%), Positives = 70/161 (43%), Gaps = 21/161 (13%)
Frame = -2
Query: 423 SSCNVAYTIISKILANRLKPLLSKFISSNQGTFVPKRSIGDNVRLVHDSPYNLTAWRGKR 244
S CNV Y +ISK L NRL+PLLS ISS Q F+P+R I DNV + +S + + +
Sbjct: 29 SLCNVIYKVISKCLVNRLRPLLSDIISSTQSAFIPERMITDNVLIAFESIHAI------Q 82
Query: 243 RGGLP*NGKSLGSN*MELPS*DSK*TWFL**VNXXXXXXXXXXXXSQW--------ESL* 88
R P N S + ++L + W + QW ++
Sbjct: 83 RNNSPDN--SFCAYKLDLSKAYDRVDW-----DFLERALLKVGFCRQWVDWIMECVTTVK 135
Query: 87 LVSSFTG-------------QGDPLSPYLFFIVTIDLSRML 4
+F G QGDPLSPYLF V LS +L
Sbjct: 136 FSVNFNGSLLEAFSPTRGLRQGDPLSPYLFLFVAEGLSSVL 176