BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028089
         (602 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...   102   4e-20
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...   100   2e-19
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   100   3e-19
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]        99   7e-19
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    99   7e-19

>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score =  102 bits (255), Expect = 4e-20
 Identities = 53/135 (39%), Positives = 79/135 (58%), Gaps = 2/135 (1%)
 Frame = -3

Query: 597 LCNRFIWAGPSMARKMHHSSHATLRLEKEQGGLGLIDPKTWNKAAYCGLVFKLATRSDSL 418
           LC+ F+W+GP + RK    S   + + KE+GGLGL      NK     L+++L + S SL
Sbjct: 62  LCSAFLWSGPELNRKKAKVSWNDVCMPKEEGGLGLRSLTEANKVCCLKLIWRLLS-SSSL 120

Query: 417 WVKWSWEHHIKQSHFWTMKVPQDC-SWVWRGVLKHREVAWRFVRYSIANGHDTSFWHDPW 241
           WV+W  ++ I++  FW+++      SW+WR +LK+R +A  F +Y I NG   SFWHD W
Sbjct: 121 WVQWLRQYVIRKGSFWSLRDTSTLGSWMWRKLLKYRHLASGFTQYEIRNGKGVSFWHDNW 180

Query: 240 CS-GPLILNAQAKIC 199
              GPLI  +  + C
Sbjct: 181 SPLGPLIAISGTRGC 195


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score =  100 bits (249), Expect = 2e-19
 Identities = 43/122 (35%), Positives = 71/122 (58%)
 Frame = -3

Query: 600 KLCNRFIWAGPSMARKMHHSSHATLRLEKEQGGLGLIDPKTWNKAAYCGLVFKLATRSDS 421
           KLC+ F+W+GP ++      +  T+   K +GGLGL   K  N      L++++ ++ DS
Sbjct: 359 KLCSAFLWSGPELSTNKAKIAWETVCRPKREGGLGLQSIKEANDVCCLKLIWRIVSQGDS 418

Query: 420 LWVKWSWEHHIKQSHFWTMKVPQDCSWVWRGVLKHREVAWRFVRYSIANGHDTSFWHDPW 241
           LWV+W   + +K++ FW+ +     SW+W+ +LK+R+ A  F +  I NG   SFW+D W
Sbjct: 419 LWVQWIRTYLLKRNTFWSFRSASQGSWMWKKLLKYRDTAKAFSKVDIRNGETASFWYDDW 478

Query: 240 CS 235
            S
Sbjct: 479 SS 480


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  100 bits (248), Expect = 3e-19
 Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
 Frame = -3

Query: 600  KLCNRFIWAGPSMARKMHHSSHATLRLEKEQGGLGLIDPKTWNKAAYCGLVFKLATRSDS 421
            ++CNRF+W      R     S     L K +GGLGL +  TWNK     L++ L  R DS
Sbjct: 833  QMCNRFLWGNDITRRGDIKVSWQNSCLPKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDS 892

Query: 420  LWVKWSWEHHIKQSHFWTMKVPQDCSWVWRGVLKHREVAWRFVRYSIANGHDTSFWHDPW 241
            LWV W+  + ++  +FW  +     SW+W+ +L  R +A RF+R ++ NG   S+W+D W
Sbjct: 893  LWVAWNHANRLRHVNFWNAEAASHHSWIWKAILGLRPLAKRFLRGAVGNGQLLSYWYDHW 952

Query: 240  CS-GPLI 223
             + GPLI
Sbjct: 953  SNLGPLI 959


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score = 98.6 bits (244), Expect = 7e-19
 Identities = 48/125 (38%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
 Frame = -3

Query: 597  LCNRFIWAGPSMARKMHHSSHATLRLEKEQGGLGLIDPKTWNKAAYCGLVFKLATRSDSL 418
            LC+RF+W+G     K    S A L L K +GGLGL     WNK     L+++L    DSL
Sbjct: 835  LCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSL 894

Query: 417  WVKWSWEHHIKQSHFWTMKVPQDCSWVWRGVLKHREVAWRFVRYSIANGHDTSFWHDPWC 238
            W  W   HH+ +  FW ++  Q  SW W+ +L  R +A +F+   + NG    +W+D W 
Sbjct: 895  WADWQHLHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYWYDNWT 954

Query: 237  S-GPL 226
            S GPL
Sbjct: 955  SLGPL 959


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 98.6 bits (244), Expect = 7e-19
 Identities = 47/122 (38%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
 Frame = -3

Query: 600  KLCNRFIWAGPSMARKMHHSSHATLRLEKEQGGLGLIDPKTWNKAAYCGLVFKLATRSDS 421
            K+ + F+W+GP +  K    + + +   KE+GGLGL   K  N+ +   L++++ +  DS
Sbjct: 988  KMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDS 1047

Query: 420  LWVKWSWEHHIKQSHFWTMKVPQDC-SWVWRGVLKHREVAWRFVRYSIANGHDTSFWHDP 244
            LWVKW  +H I++  FW++K      SW+WR +LK R+ A  F R  + +G  TSFWHD 
Sbjct: 1048 LWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEVRSGTFTSFWHDH 1107

Query: 243  WC 238
            WC
Sbjct: 1108 WC 1109