BLASTX nr result
ID: Coptis21_contig00028089
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00028089 (602 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub... 102 4e-20 emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal... 100 2e-19 gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 100 3e-19 gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 99 7e-19 gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 99 7e-19 >gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata] Length = 441 Score = 102 bits (255), Expect = 4e-20 Identities = 53/135 (39%), Positives = 79/135 (58%), Gaps = 2/135 (1%) Frame = -3 Query: 597 LCNRFIWAGPSMARKMHHSSHATLRLEKEQGGLGLIDPKTWNKAAYCGLVFKLATRSDSL 418 LC+ F+W+GP + RK S + + KE+GGLGL NK L+++L + S SL Sbjct: 62 LCSAFLWSGPELNRKKAKVSWNDVCMPKEEGGLGLRSLTEANKVCCLKLIWRLLS-SSSL 120 Query: 417 WVKWSWEHHIKQSHFWTMKVPQDC-SWVWRGVLKHREVAWRFVRYSIANGHDTSFWHDPW 241 WV+W ++ I++ FW+++ SW+WR +LK+R +A F +Y I NG SFWHD W Sbjct: 121 WVQWLRQYVIRKGSFWSLRDTSTLGSWMWRKLLKYRHLASGFTQYEIRNGKGVSFWHDNW 180 Query: 240 CS-GPLILNAQAKIC 199 GPLI + + C Sbjct: 181 SPLGPLIAISGTRGC 195 >emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana] gi|7267919|emb|CAB78261.1| putative reverse transcriptase [Arabidopsis thaliana] Length = 662 Score = 100 bits (249), Expect = 2e-19 Identities = 43/122 (35%), Positives = 71/122 (58%) Frame = -3 Query: 600 KLCNRFIWAGPSMARKMHHSSHATLRLEKEQGGLGLIDPKTWNKAAYCGLVFKLATRSDS 421 KLC+ F+W+GP ++ + T+ K +GGLGL K N L++++ ++ DS Sbjct: 359 KLCSAFLWSGPELSTNKAKIAWETVCRPKREGGLGLQSIKEANDVCCLKLIWRIVSQGDS 418 Query: 420 LWVKWSWEHHIKQSHFWTMKVPQDCSWVWRGVLKHREVAWRFVRYSIANGHDTSFWHDPW 241 LWV+W + +K++ FW+ + SW+W+ +LK+R+ A F + I NG SFW+D W Sbjct: 419 LWVQWIRTYLLKRNTFWSFRSASQGSWMWKKLLKYRDTAKAFSKVDIRNGETASFWYDDW 478 Query: 240 CS 235 S Sbjct: 479 SS 480 >gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus] Length = 1214 Score = 100 bits (248), Expect = 3e-19 Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 1/127 (0%) Frame = -3 Query: 600 KLCNRFIWAGPSMARKMHHSSHATLRLEKEQGGLGLIDPKTWNKAAYCGLVFKLATRSDS 421 ++CNRF+W R S L K +GGLGL + TWNK L++ L R DS Sbjct: 833 QMCNRFLWGNDITRRGDIKVSWQNSCLPKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDS 892 Query: 420 LWVKWSWEHHIKQSHFWTMKVPQDCSWVWRGVLKHREVAWRFVRYSIANGHDTSFWHDPW 241 LWV W+ + ++ +FW + SW+W+ +L R +A RF+R ++ NG S+W+D W Sbjct: 893 LWVAWNHANRLRHVNFWNAEAASHHSWIWKAILGLRPLAKRFLRGAVGNGQLLSYWYDHW 952 Query: 240 CS-GPLI 223 + GPLI Sbjct: 953 SNLGPLI 959 >gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] Length = 1213 Score = 98.6 bits (244), Expect = 7e-19 Identities = 48/125 (38%), Positives = 67/125 (53%), Gaps = 1/125 (0%) Frame = -3 Query: 597 LCNRFIWAGPSMARKMHHSSHATLRLEKEQGGLGLIDPKTWNKAAYCGLVFKLATRSDSL 418 LC+RF+W+G K S A L L K +GGLGL WNK L+++L DSL Sbjct: 835 LCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSL 894 Query: 417 WVKWSWEHHIKQSHFWTMKVPQDCSWVWRGVLKHREVAWRFVRYSIANGHDTSFWHDPWC 238 W W HH+ + FW ++ Q SW W+ +L R +A +F+ + NG +W+D W Sbjct: 895 WADWQHLHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYWYDNWT 954 Query: 237 S-GPL 226 S GPL Sbjct: 955 SLGPL 959 >gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1352 Score = 98.6 bits (244), Expect = 7e-19 Identities = 47/122 (38%), Positives = 73/122 (59%), Gaps = 1/122 (0%) Frame = -3 Query: 600 KLCNRFIWAGPSMARKMHHSSHATLRLEKEQGGLGLIDPKTWNKAAYCGLVFKLATRSDS 421 K+ + F+W+GP + K + + + KE+GGLGL K N+ + L++++ + DS Sbjct: 988 KMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDS 1047 Query: 420 LWVKWSWEHHIKQSHFWTMKVPQDC-SWVWRGVLKHREVAWRFVRYSIANGHDTSFWHDP 244 LWVKW +H I++ FW++K SW+WR +LK R+ A F R + +G TSFWHD Sbjct: 1048 LWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEVRSGTFTSFWHDH 1107 Query: 243 WC 238 WC Sbjct: 1108 WC 1109