BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028079
         (833 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vi...   104   3e-20
ref|XP_002301588.1| f-box family protein [Populus trichocarpa] g...   100   5e-19
ref|XP_002520393.1| ubiquitin-protein ligase, putative [Ricinus ...    99   1e-18
ref|NP_566322.1| F-box protein [Arabidopsis thaliana] gi|7526578...    96   1e-17
ref|XP_002320506.1| f-box family protein [Populus trichocarpa] g...    95   2e-17

>ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vinifera]
           gi|147785390|emb|CAN68678.1| hypothetical protein
           VITISV_041941 [Vitis vinifera]
          Length = 409

 Score =  104 bits (259), Expect = 3e-20
 Identities = 90/279 (32%), Positives = 130/279 (46%), Gaps = 28/279 (10%)
 Frame = -1

Query: 833 REPIYVWNPFTGHISNLPSFSTKTIEKCYFSCFGHSYILNEYKILAFVLHDYTDGCYDGY 654
           ++ +YV NPFT     LP       ++  F  FG+  +   YK++  V   Y +G Y G+
Sbjct: 140 KDAVYVHNPFTRDFKQLPKSLQYPDQEVVFG-FGYHPMTEVYKVVKVVY--YRNG-YGGF 195

Query: 653 SSDDEKRTLEAEV--LTLGSGSWRRIRRVPYP----PSDDEYIYTNGAFHWLWLELDVLG 492
           S        ++EV  LTLGS +WR + +V Y     PS+      NG  HW+      + 
Sbjct: 196 SRFRRITCSQSEVQVLTLGSPTWRSLGKVSYQLDRWPSE---ALVNGRLHWVTRPRRYV- 251

Query: 491 YQLQIGSFDLAKEKFQFIPLPS----SMCNSTILNIGALGGCLSAVDYSFPKHVVEVWTM 324
               I SFDLA E+F+ IP P     S CN  +L    LGGCLSA  +      +EVW M
Sbjct: 252 -TRFIVSFDLADEQFREIPKPDCGGLSRCNYHLL---VLGGCLSAAVHR-SNGKLEVWVM 306

Query: 323 KQYGVQESWTRQYEISMH------------------DSVGHLLRPLCLLKCGKVLFDCNG 198
           K+Y V+ESW +++ I  H                     G  +R LCLLK G++L +  G
Sbjct: 307 KEYDVKESWIKEFNIGAHLPKGLKQDVNRPHRIWRNAPKGRGVRLLCLLKNGEILLEYKG 366

Query: 197 IELVLYDPGKRQIRKIGLPRSSNEPNFSFDNVIVHSGTL 81
             LV Y+P + + + + L    N     +    VH G+L
Sbjct: 367 RVLVSYNPERGKFKDLTLKGLPN-----WFQTFVHVGSL 400


>ref|XP_002301588.1| f-box family protein [Populus trichocarpa]
           gi|222843314|gb|EEE80861.1| f-box family protein
           [Populus trichocarpa]
          Length = 408

 Score =  100 bits (248), Expect = 5e-19
 Identities = 78/274 (28%), Positives = 122/274 (44%), Gaps = 24/274 (8%)
 Frame = -1

Query: 830 EPIYVWNPFTGHISNLPSFSTKTIEKCYFSCFGHSYILNEYKILAFVLHDYTDGCYDGYS 651
           + +Y++NPFTG    LP       ++  F  FG +   NEYK++  V +    G Y    
Sbjct: 140 DSLYIYNPFTGRYKELPKSLQYPDQEVVFG-FGFNPKTNEYKVIRIVYYRNGHGRYPR-- 196

Query: 650 SDDEKRTL----EAEVLTLGSGSWRRIRRVPYP-PSDDEYIYTNGAFHWLWLELDVLGYQ 486
               +R +    + ++LTLG   WR + +V Y           NG  HW+         +
Sbjct: 197 ---SRRIIYPLSQVQILTLGCPGWRSLGKVSYRLVRRASETLVNGRLHWVSRPCRNKPAR 253

Query: 485 LQIGSFDLAKEKFQFIPLPS-SMCNSTILNIGALGGCLSAVDYSFPKHVVEVWTMKQYGV 309
            ++ SFDL  E+F+ +P P     N    ++  L GCLS   Y     + E+W MK+Y V
Sbjct: 254 -RLVSFDLTDEQFREVPKPDCGGLNRCDYHLAVLRGCLSVAVYCNYGRL-EIWVMKEYNV 311

Query: 308 QESWTRQYEISMH------------------DSVGHLLRPLCLLKCGKVLFDCNGIELVL 183
           +ESW ++Y I  +                   S G  +R LC+LK G++L +     LV 
Sbjct: 312 KESWVKEYNIGAYMPKGLKQNLVRPLKIWKNASNGRAVRALCVLKNGEILLEYKNRALVS 371

Query: 182 YDPGKRQIRKIGLPRSSNEPNFSFDNVIVHSGTL 81
           YDP K + + I L  +       +   +VH G+L
Sbjct: 372 YDPKKGKFKDIDLQGTP-----KWFQTVVHVGSL 400


>ref|XP_002520393.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223540440|gb|EEF42009.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 369

 Score = 99.0 bits (245), Expect = 1e-18
 Identities = 76/259 (29%), Positives = 122/259 (47%), Gaps = 4/259 (1%)
 Frame = -1

Query: 824 IYVWNPFTGHISNLPSFSTKTIEKCYFSCFGHSYILNEYKILAFVLHDYTDGCYDGYSSD 645
           I VWNP TG    LP+ ++ T +K ++  FG+   L++YKI+               +S 
Sbjct: 123 ITVWNPSTGESRKLPAPTSSTEDKLFYG-FGYDSKLDDYKIVRG-------------ASS 168

Query: 644 DEKRTLEAEVLTLGSGSWRRIRRVPYPPS-DDEYIYTNGAFHWLWLELDVLGYQLQIGSF 468
                ++ EV  L    WR I+ +          I  NG  HWL   +D L   L I S 
Sbjct: 169 ASCNEVQMEVFNLKGNRWRAIQNLHCNVRFQGSAIALNGILHWL---VDQLNEGLMIVSL 225

Query: 467 DLAKEKF-QFIPLPSSMCNSTILNIGALGGCLSAVDYSFPKHVVEVWTMKQYGVQESWTR 291
           DLA+EKF + + LP  +  +    +  LG  LS    S   +  E WT+K YG + SW +
Sbjct: 226 DLAEEKFLEMVVLPDYVTENWGTELKVLGDSLSVCSSSHTTNF-EAWTVKGYGSKASWLK 284

Query: 290 QYEISMHDSVG--HLLRPLCLLKCGKVLFDCNGIELVLYDPGKRQIRKIGLPRSSNEPNF 117
            +  +     G  + L  L + K G VL +  G+E+++Y+P ++ +++  +P      N+
Sbjct: 285 LFSFNSDPLPGCKYWLNVLWVAKNGNVLLNYEGLEIIVYNPKEQTLKQFNVPN-----NW 339

Query: 116 SFDNVIVHSGTLVSPMWGN 60
            +   I +  +LVSP  GN
Sbjct: 340 HWFEAITYIESLVSPNAGN 358


>ref|NP_566322.1| F-box protein [Arabidopsis thaliana]
           gi|75265789|sp|Q9SFC7.1|FB135_ARATH RecName: Full=F-box
           protein At3g07870 gi|6648199|gb|AAF21197.1|AC013483_21
           unknown protein [Arabidopsis thaliana]
           gi|15983479|gb|AAL11607.1|AF424614_1 AT3g07870/F17A17_21
           [Arabidopsis thaliana] gi|109134141|gb|ABG25068.1|
           At3g07870 [Arabidopsis thaliana]
           gi|332641092|gb|AEE74613.1| F-box protein [Arabidopsis
           thaliana]
          Length = 417

 Score = 95.5 bits (236), Expect = 1e-17
 Identities = 84/284 (29%), Positives = 131/284 (46%), Gaps = 34/284 (11%)
 Frame = -1

Query: 830 EPIYVWNPFTGHISNLPSFSTKTIEKCYFSCFGHSYILNEYKILAFVLH----DYTDGCY 663
           + +Y++NPFT +   LP  S K  ++     FG   +  EYK+L  V         +G Y
Sbjct: 136 DSLYLYNPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIY 195

Query: 662 DGYSSDDEKRTLEAEVLTLGSG------SWRRIRRVPYP-PSDDEYIYTNGAFHWLWLEL 504
            G      K++ E ++LTL S       SWR + + PY           NG  H++    
Sbjct: 196 RGRGRIQYKQS-EVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTRPR 254

Query: 503 DVLGYQLQIGSFDLAKEKFQFIPLPS-SMCNSTILNIGALGGCLSAVDY-SFPKHVVEVW 330
             +  +  + SFDL  E+F+ IP P     N T   +  L GCL AV Y ++ K  +++W
Sbjct: 255 RHVPDRKFV-SFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYGK--LDIW 311

Query: 329 TMKQYGVQESWTRQYEISMH------------------DSVGHLLRPLCLLKCGKVLFDC 204
            MK YGV+ESW ++Y I  +                     G ++R LCLL+ G++L + 
Sbjct: 312 VMKTYGVKESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAENGKVVRVLCLLENGEILLEY 371

Query: 203 NGIELVLYDPGKRQIRKI---GLPRSSNEPNFSFDNVIVHSGTL 81
               LV YDP   + + +   GLP        ++ + +VH+GTL
Sbjct: 372 KSRVLVAYDPKLGKFKDLLFHGLP--------NWFHTVVHAGTL 407


>ref|XP_002320506.1| f-box family protein [Populus trichocarpa]
           gi|222861279|gb|EEE98821.1| f-box family protein
           [Populus trichocarpa]
          Length = 422

 Score = 94.7 bits (234), Expect = 2e-17
 Identities = 81/277 (29%), Positives = 128/277 (46%), Gaps = 27/277 (9%)
 Frame = -1

Query: 830 EPIYVWNPFTGHISNLPSFSTKTIEKCYFSCFGHSYILNEYKILAFVLHDYTDGCYDGYS 651
           + +Y++NPFTG    LP  S +  ++   S FG +    EYK++  V   Y +G + GY 
Sbjct: 141 DSLYIYNPFTGCYKELPK-SLQYPDQEVVSGFGFNPKTKEYKVIRIVY--YRNG-HGGYP 196

Query: 650 SDDEKRTL----EAEVLTLGSGSWRRIRRVPYP-PSDDEYIYTNGAFHWLWLELDVLGYQ 486
               +R +    E ++LTLG   WR + +V Y           NG  HW+         +
Sbjct: 197 RS--RRIIYPLSEVQILTLGCPEWRSLGKVSYRLVRRASGALVNGRLHWISRPCRNKPAR 254

Query: 485 LQIGSFDLAKEKFQFIPLPS----SMCNSTILNIGALGGCLSAVDYSFPKHVVEVWTMKQ 318
            ++ SFDL  E+F+ +  P     + CN  ++    L GCLSA  Y     + E+W MK+
Sbjct: 255 -RLVSFDLTDEQFREVSKPDCGGLNRCNYHLV---VLRGCLSAAVYCNYGRL-EIWVMKE 309

Query: 317 YGVQESWTRQYEISMH------------------DSVGHLLRPLCLLKCGKVLFDCNGIE 192
           Y V+ESW ++Y I  +                   S G ++  LC+LK G++L +     
Sbjct: 310 YNVKESWVKEYNIGAYMPKGLKQNQDRQLKIWKNSSNGRVVGALCVLKNGEILLEYKNRV 369

Query: 191 LVLYDPGKRQIRKIGLPRSSNEPNFSFDNVIVHSGTL 81
           LV YDP   + + I L  + N     +   +VH G+L
Sbjct: 370 LVSYDPKNGKFKDIELQGAPN-----WFQTVVHVGSL 401