BLASTX nr result
ID: Coptis21_contig00028078
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00028078
(484 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI30094.3| unnamed protein product [Vitis vinifera] 228 3e-58
ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containi... 228 3e-58
ref|XP_002529164.1| pentatricopeptide repeat-containing protein,... 219 1e-55
ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containi... 215 3e-54
gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvat... 215 3e-54
>emb|CBI30094.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 228 bits (582), Expect = 3e-58
Identities = 111/164 (67%), Positives = 137/164 (83%), Gaps = 3/164 (1%)
Frame = -2
Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGM-QAEGIKPNQGTFVCILNACCDLAGLSE 307
M ++NV++WTT+I G VQ+G+SEEALKIFS M G KPNQGTFV +L AC +LAGL E
Sbjct: 275 MPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGE 334
Query: 306 GKQIHQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFN--RSTQRDLVTWNTMIGAY 133
G+Q+HQIISKTVYQ+S FV SAL+NMYSKCGEL A +MF+ ++QRDLV+WN +I AY
Sbjct: 335 GQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAY 394
Query: 132 AHHGLGREAILLMEEMQESGFKPDDVTYIGVLSACSHSGLVEEG 1
AHHG G+EAI +EM++SGFKPDDVTY+G+LSACSH+GLVEEG
Sbjct: 395 AHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEG 438
Score = 65.9 bits (159), Expect = 3e-09
Identities = 46/160 (28%), Positives = 75/160 (46%)
Frame = -2
Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEG 304
M E +V+TWTT+I GY++ G EEA ++F + A K N T+
Sbjct: 93 MREPDVITWTTVISGYIKCGMIEEARRLFDRVDA---KKNVVTW---------------- 133
Query: 303 KQIHQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWNTMIGAYAHH 124
+A++ Y + ++S AE++FN +++V+WNTMI YA +
Sbjct: 134 -------------------TAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQN 174
Query: 123 GLGREAILLMEEMQESGFKPDDVTYIGVLSACSHSGLVEE 4
G A+ L E+M E V++ V+S + G +EE
Sbjct: 175 GRIDSAMYLFEKMPERNV----VSWNTVMSMLAQCGRIEE 210
Score = 65.9 bits (159), Expect = 3e-09
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 1/162 (0%)
Frame = -2
Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEG 304
M ERNVV+W T++ Q G+ EEA ++F M + +L+ DL
Sbjct: 187 MPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLLDEALDL------ 240
Query: 303 KQIHQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWNTMIGAYAHH 124
++ + + + + + N G+L A ++FN ++++++W TMI
Sbjct: 241 --FERMPERDLPSWNTMITGLIQN-----GDLRRARKLFNEMPKKNVISWTTMITGCVQE 293
Query: 123 GLGREAILLMEEM-QESGFKPDDVTYIGVLSACSHSGLVEEG 1
G EA+ + M +G KP+ T++ VL ACS+ + EG
Sbjct: 294 GESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEG 335
>ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 228 bits (582), Expect = 3e-58
Identities = 111/164 (67%), Positives = 137/164 (83%), Gaps = 3/164 (1%)
Frame = -2
Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGM-QAEGIKPNQGTFVCILNACCDLAGLSE 307
M ++NV++WTT+I G VQ+G+SEEALKIFS M G KPNQGTFV +L AC +LAGL E
Sbjct: 296 MPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGE 355
Query: 306 GKQIHQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFN--RSTQRDLVTWNTMIGAY 133
G+Q+HQIISKTVYQ+S FV SAL+NMYSKCGEL A +MF+ ++QRDLV+WN +I AY
Sbjct: 356 GQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAY 415
Query: 132 AHHGLGREAILLMEEMQESGFKPDDVTYIGVLSACSHSGLVEEG 1
AHHG G+EAI +EM++SGFKPDDVTY+G+LSACSH+GLVEEG
Sbjct: 416 AHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEG 459
Score = 65.9 bits (159), Expect = 3e-09
Identities = 46/160 (28%), Positives = 75/160 (46%)
Frame = -2
Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEG 304
M E +V+TWTT+I GY++ G EEA ++F + A K N T+
Sbjct: 78 MREPDVITWTTVISGYIKCGMIEEARRLFDRVDA---KKNVVTW---------------- 118
Query: 303 KQIHQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWNTMIGAYAHH 124
+A++ Y + ++S AE++FN +++V+WNTMI YA +
Sbjct: 119 -------------------TAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQN 159
Query: 123 GLGREAILLMEEMQESGFKPDDVTYIGVLSACSHSGLVEE 4
G A+ L E+M E V++ V+S + G +EE
Sbjct: 160 GRIDSAMYLFEKMPERNV----VSWNTVMSMLAQCGRIEE 195
Score = 62.8 bits (151), Expect = 3e-08
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 1/162 (0%)
Frame = -2
Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEG 304
M ERNVV+W +I GY Q+ + +EAL +F M + P+ T + GL +
Sbjct: 234 MPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDL-PSWNTMI---------TGLIQN 283
Query: 303 KQIHQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWNTMIGAYAHH 124
G+L A ++FN ++++++W TMI
Sbjct: 284 -----------------------------GDLRRARKLFNEMPKKNVISWTTMITGCVQE 314
Query: 123 GLGREAILLMEEM-QESGFKPDDVTYIGVLSACSHSGLVEEG 1
G EA+ + M +G KP+ T++ VL ACS+ + EG
Sbjct: 315 GESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEG 356
Score = 60.5 bits (145), Expect = 1e-07
Identities = 39/135 (28%), Positives = 69/135 (51%)
Frame = -2
Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEG 304
M +NVV+W T+I GY Q+G+ + A+ +F M + + T + +L C + E
Sbjct: 141 MPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVV-SWNTVMSMLAQC---GRIEEA 196
Query: 303 KQIHQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWNTMIGAYAHH 124
+++ + + +A++ SK G + A +F+R +R++V+WN MI YA +
Sbjct: 197 RRLFDRMP----ERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQN 252
Query: 123 GLGREAILLMEEMQE 79
EA+ L E M E
Sbjct: 253 LRLDEALDLFERMPE 267
>ref|XP_002529164.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223531388|gb|EEF33223.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 453
Score = 219 bits (559), Expect = 1e-55
Identities = 107/164 (65%), Positives = 135/164 (82%), Gaps = 3/164 (1%)
Frame = -2
Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEG-IKPNQGTFVCILNACCDLAGLSE 307
M E+NVV+WTT+I GYVQ+G+SE AL IF M +G + PN+GTFV +L AC DLAGL E
Sbjct: 243 MPEKNVVSWTTMITGYVQEGESEAALNIFMEMIRDGGVMPNEGTFVNVLGACSDLAGLGE 302
Query: 306 GKQIHQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMF-NRST-QRDLVTWNTMIGAY 133
G+Q+HQ+ISKTVYQ+ FV SAL+NMYSKCGEL +A +MF NR+T QRDLV+WN M+ AY
Sbjct: 303 GQQVHQMISKTVYQDMPFVVSALINMYSKCGELDMARKMFDNRTTSQRDLVSWNCMVAAY 362
Query: 132 AHHGLGREAILLMEEMQESGFKPDDVTYIGVLSACSHSGLVEEG 1
AHHG G+EAI L EM+ GF+PDD++Y+G+LSACSH+GLV+EG
Sbjct: 363 AHHGCGKEAINLFNEMRALGFEPDDISYVGLLSACSHAGLVKEG 406
Score = 59.3 bits (142), Expect = 3e-07
Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 34/192 (17%)
Frame = -2
Query: 474 RNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEGKQI 295
+NVVTWT ++ GY++ Q EA ++ + P + +++ +AGL+ +I
Sbjct: 116 KNVVTWTAMVSGYMRLNQVLEAERVDEARRLFDEMPKRD----VISWTAMVAGLARNGRI 171
Query: 294 HQI--ISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWN---------- 151
+ I + + + +A++ Y+K L A E+F R +RDL +WN
Sbjct: 172 DEARKIFDKMPERNVVSWNAMITGYAKNMRLVEAFELFERMPERDLPSWNTMITGFIQNK 231
Query: 150 ---------------------TMIGAYAHHGLGREAI-LLMEEMQESGFKPDDVTYIGVL 37
TMI Y G A+ + ME +++ G P++ T++ VL
Sbjct: 232 ELKLARKLLDEMPEKNVVSWTTMITGYVQEGESEAALNIFMEMIRDGGVMPNEGTFVNVL 291
Query: 36 SACSHSGLVEEG 1
ACS + EG
Sbjct: 292 GACSDLAGLGEG 303
Score = 56.6 bits (135), Expect = 2e-06
Identities = 38/137 (27%), Positives = 75/137 (54%), Gaps = 2/137 (1%)
Frame = -2
Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEG 304
M ER+V+TWTT+I GY++ EA ++F +A+ +K N T+ +++ L + E
Sbjct: 81 MLERDVITWTTVITGYIKCRLIVEARRLFD--RADAMK-NVVTWTAMVSGYMRLNQVLEA 137
Query: 303 KQIHQI--ISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWNTMIGAYA 130
+++ + + + + +A++ ++ G + A ++F++ +R++V+WN MI YA
Sbjct: 138 ERVDEARRLFDEMPKRDVISWTAMVAGLARNGRIDEARKIFDKMPERNVVSWNAMITGYA 197
Query: 129 HHGLGREAILLMEEMQE 79
+ EA L E M E
Sbjct: 198 KNMRLVEAFELFERMPE 214
>ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Brachypodium distachyon]
Length = 618
Score = 215 bits (547), Expect = 3e-54
Identities = 97/161 (60%), Positives = 134/161 (83%)
Frame = -2
Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEG 304
M RNVVTWTT++ GY+Q QSE AL++F+GM +GI+PNQ TF+ ++AC +LAGLSEG
Sbjct: 279 MPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEG 338
Query: 303 KQIHQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWNTMIGAYAHH 124
+Q+HQ+I KT +Q F+ES L+N+Y+KCGE+ +A ++FN S ++D+++WN MI AYAHH
Sbjct: 339 QQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDVISWNGMIAAYAHH 398
Query: 123 GLGREAILLMEEMQESGFKPDDVTYIGVLSACSHSGLVEEG 1
G+G EAI L E+MQE+G+KP+DVTY+G+LSACSHSGLV+EG
Sbjct: 399 GVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEG 439
Score = 72.0 bits (175), Expect = 5e-11
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 3/164 (1%)
Frame = -2
Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEG 304
M ERNV+ WTT++ G + G EA +F GM V NA ++G +
Sbjct: 186 MPERNVMAWTTMVAGIARSGSVNEARALFDGMPERN--------VVSWNAM--ISGYARN 235
Query: 303 KQI---HQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWNTMIGAY 133
I H + K ++ A + ++ + + L A+E+F++ +R++VTW TM+ Y
Sbjct: 236 HMIDEAHDLFMKMPTRDIASW-NIMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGY 294
Query: 132 AHHGLGREAILLMEEMQESGFKPDDVTYIGVLSACSHSGLVEEG 1
A+ L M G +P+ VT++G + ACS+ + EG
Sbjct: 295 LQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEG 338
Score = 60.1 bits (144), Expect = 2e-07
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Frame = -2
Query: 477 ERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEGKQ 298
E++V++W +I Y G EA+ ++ MQ G KPN T+V +L+AC + EG +
Sbjct: 382 EKDVISWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLR 441
Query: 297 IHQIISKTVYQNSAFVE----SALLNMYSKCGELSIAEEMFN-RSTQRDLVTWNTMIGAY 133
I + + K S V + L+++ S+ G L A+ + + + WN ++G
Sbjct: 442 IFEYMVK---DRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGC 498
Query: 132 AHHG 121
HG
Sbjct: 499 NSHG 502
>gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
Length = 618
Score = 215 bits (547), Expect = 3e-54
Identities = 97/161 (60%), Positives = 133/161 (82%)
Frame = -2
Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEG 304
M RNV+TWTT++ GY+Q QSE AL+IF+GM EGI+PNQ TF+ ++AC +LAGLSEG
Sbjct: 279 MPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEG 338
Query: 303 KQIHQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWNTMIGAYAHH 124
+Q+HQ+I KT +Q F+ES L+N+Y+KCGE+ +A ++F+ S ++D+++WN MI AYAHH
Sbjct: 339 QQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHH 398
Query: 123 GLGREAILLMEEMQESGFKPDDVTYIGVLSACSHSGLVEEG 1
G+G EAI L E+MQE G+KP+DVTY+G+LSACSHSGLV+EG
Sbjct: 399 GVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEG 439
Score = 72.4 bits (176), Expect = 4e-11
Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
Frame = -2
Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEG 304
M ERNV+ WTT++ G + G +EA +F GM V NA ++G +
Sbjct: 186 MPERNVMAWTTMVAGIARSGSVDEARALFDGMPERN--------VVSWNAM--ISGYARN 235
Query: 303 KQI---HQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWNTMIGAY 133
+I H + K ++ A + ++ + + +L A+++F++ +R+++TW TM+ Y
Sbjct: 236 HRIDEAHDLFMKMPTRDIASW-NIMITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGY 294
Query: 132 AHHGLGREAILLMEEMQESGFKPDDVTYIGVLSACSHSGLVEEG 1
A+ + M G +P+ VT++G + ACS+ + EG
Sbjct: 295 LQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEG 338
Score = 60.8 bits (146), Expect = 1e-07
Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Frame = -2
Query: 477 ERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEGKQ 298
E++V++W +I Y G EA+ ++ MQ +G KPN T+V +L+AC + EG +
Sbjct: 382 EKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLR 441
Query: 297 IHQIISKTVYQNSAFVE----SALLNMYSKCGELSIAEEMFN-RSTQRDLVTWNTMIGAY 133
I + + K S V + L+++ S+ G L A+ + + + WN ++G
Sbjct: 442 IFEYMVK---DRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGC 498
Query: 132 AHHG 121
HG
Sbjct: 499 NSHG 502