BLASTX nr result

ID: Coptis21_contig00028078 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028078
         (484 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI30094.3| unnamed protein product [Vitis vinifera]              228   3e-58
ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containi...   228   3e-58
ref|XP_002529164.1| pentatricopeptide repeat-containing protein,...   219   1e-55
ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containi...   215   3e-54
gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvat...   215   3e-54

>emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  228 bits (582), Expect = 3e-58
 Identities = 111/164 (67%), Positives = 137/164 (83%), Gaps = 3/164 (1%)
 Frame = -2

Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGM-QAEGIKPNQGTFVCILNACCDLAGLSE 307
           M ++NV++WTT+I G VQ+G+SEEALKIFS M    G KPNQGTFV +L AC +LAGL E
Sbjct: 275 MPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGE 334

Query: 306 GKQIHQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFN--RSTQRDLVTWNTMIGAY 133
           G+Q+HQIISKTVYQ+S FV SAL+NMYSKCGEL  A +MF+   ++QRDLV+WN +I AY
Sbjct: 335 GQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAY 394

Query: 132 AHHGLGREAILLMEEMQESGFKPDDVTYIGVLSACSHSGLVEEG 1
           AHHG G+EAI   +EM++SGFKPDDVTY+G+LSACSH+GLVEEG
Sbjct: 395 AHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEG 438



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 46/160 (28%), Positives = 75/160 (46%)
 Frame = -2

Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEG 304
           M E +V+TWTT+I GY++ G  EEA ++F  + A   K N  T+                
Sbjct: 93  MREPDVITWTTVISGYIKCGMIEEARRLFDRVDA---KKNVVTW---------------- 133

Query: 303 KQIHQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWNTMIGAYAHH 124
                              +A++  Y +  ++S AE++FN    +++V+WNTMI  YA +
Sbjct: 134 -------------------TAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQN 174

Query: 123 GLGREAILLMEEMQESGFKPDDVTYIGVLSACSHSGLVEE 4
           G    A+ L E+M E       V++  V+S  +  G +EE
Sbjct: 175 GRIDSAMYLFEKMPERNV----VSWNTVMSMLAQCGRIEE 210



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 1/162 (0%)
 Frame = -2

Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEG 304
           M ERNVV+W T++    Q G+ EEA ++F  M    +         +L+   DL      
Sbjct: 187 MPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLLDEALDL------ 240

Query: 303 KQIHQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWNTMIGAYAHH 124
               ++  + +   +  +   + N     G+L  A ++FN   ++++++W TMI      
Sbjct: 241 --FERMPERDLPSWNTMITGLIQN-----GDLRRARKLFNEMPKKNVISWTTMITGCVQE 293

Query: 123 GLGREAILLMEEM-QESGFKPDDVTYIGVLSACSHSGLVEEG 1
           G   EA+ +   M   +G KP+  T++ VL ACS+   + EG
Sbjct: 294 GESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEG 335


>ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  228 bits (582), Expect = 3e-58
 Identities = 111/164 (67%), Positives = 137/164 (83%), Gaps = 3/164 (1%)
 Frame = -2

Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGM-QAEGIKPNQGTFVCILNACCDLAGLSE 307
           M ++NV++WTT+I G VQ+G+SEEALKIFS M    G KPNQGTFV +L AC +LAGL E
Sbjct: 296 MPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGE 355

Query: 306 GKQIHQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFN--RSTQRDLVTWNTMIGAY 133
           G+Q+HQIISKTVYQ+S FV SAL+NMYSKCGEL  A +MF+   ++QRDLV+WN +I AY
Sbjct: 356 GQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAY 415

Query: 132 AHHGLGREAILLMEEMQESGFKPDDVTYIGVLSACSHSGLVEEG 1
           AHHG G+EAI   +EM++SGFKPDDVTY+G+LSACSH+GLVEEG
Sbjct: 416 AHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEG 459



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 46/160 (28%), Positives = 75/160 (46%)
 Frame = -2

Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEG 304
           M E +V+TWTT+I GY++ G  EEA ++F  + A   K N  T+                
Sbjct: 78  MREPDVITWTTVISGYIKCGMIEEARRLFDRVDA---KKNVVTW---------------- 118

Query: 303 KQIHQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWNTMIGAYAHH 124
                              +A++  Y +  ++S AE++FN    +++V+WNTMI  YA +
Sbjct: 119 -------------------TAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQN 159

Query: 123 GLGREAILLMEEMQESGFKPDDVTYIGVLSACSHSGLVEE 4
           G    A+ L E+M E       V++  V+S  +  G +EE
Sbjct: 160 GRIDSAMYLFEKMPERNV----VSWNTVMSMLAQCGRIEE 195



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 1/162 (0%)
 Frame = -2

Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEG 304
           M ERNVV+W  +I GY Q+ + +EAL +F  M    + P+  T +          GL + 
Sbjct: 234 MPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDL-PSWNTMI---------TGLIQN 283

Query: 303 KQIHQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWNTMIGAYAHH 124
                                        G+L  A ++FN   ++++++W TMI      
Sbjct: 284 -----------------------------GDLRRARKLFNEMPKKNVISWTTMITGCVQE 314

Query: 123 GLGREAILLMEEM-QESGFKPDDVTYIGVLSACSHSGLVEEG 1
           G   EA+ +   M   +G KP+  T++ VL ACS+   + EG
Sbjct: 315 GESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEG 356



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 39/135 (28%), Positives = 69/135 (51%)
 Frame = -2

Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEG 304
           M  +NVV+W T+I GY Q+G+ + A+ +F  M    +  +  T + +L  C     + E 
Sbjct: 141 MPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVV-SWNTVMSMLAQC---GRIEEA 196

Query: 303 KQIHQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWNTMIGAYAHH 124
           +++   +     +      +A++   SK G +  A  +F+R  +R++V+WN MI  YA +
Sbjct: 197 RRLFDRMP----ERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQN 252

Query: 123 GLGREAILLMEEMQE 79
               EA+ L E M E
Sbjct: 253 LRLDEALDLFERMPE 267


>ref|XP_002529164.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531388|gb|EEF33223.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 453

 Score =  219 bits (559), Expect = 1e-55
 Identities = 107/164 (65%), Positives = 135/164 (82%), Gaps = 3/164 (1%)
 Frame = -2

Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEG-IKPNQGTFVCILNACCDLAGLSE 307
           M E+NVV+WTT+I GYVQ+G+SE AL IF  M  +G + PN+GTFV +L AC DLAGL E
Sbjct: 243 MPEKNVVSWTTMITGYVQEGESEAALNIFMEMIRDGGVMPNEGTFVNVLGACSDLAGLGE 302

Query: 306 GKQIHQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMF-NRST-QRDLVTWNTMIGAY 133
           G+Q+HQ+ISKTVYQ+  FV SAL+NMYSKCGEL +A +MF NR+T QRDLV+WN M+ AY
Sbjct: 303 GQQVHQMISKTVYQDMPFVVSALINMYSKCGELDMARKMFDNRTTSQRDLVSWNCMVAAY 362

Query: 132 AHHGLGREAILLMEEMQESGFKPDDVTYIGVLSACSHSGLVEEG 1
           AHHG G+EAI L  EM+  GF+PDD++Y+G+LSACSH+GLV+EG
Sbjct: 363 AHHGCGKEAINLFNEMRALGFEPDDISYVGLLSACSHAGLVKEG 406



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 34/192 (17%)
 Frame = -2

Query: 474 RNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEGKQI 295
           +NVVTWT ++ GY++  Q  EA ++    +     P +     +++    +AGL+   +I
Sbjct: 116 KNVVTWTAMVSGYMRLNQVLEAERVDEARRLFDEMPKRD----VISWTAMVAGLARNGRI 171

Query: 294 HQI--ISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWN---------- 151
            +   I   + + +    +A++  Y+K   L  A E+F R  +RDL +WN          
Sbjct: 172 DEARKIFDKMPERNVVSWNAMITGYAKNMRLVEAFELFERMPERDLPSWNTMITGFIQNK 231

Query: 150 ---------------------TMIGAYAHHGLGREAI-LLMEEMQESGFKPDDVTYIGVL 37
                                TMI  Y   G    A+ + ME +++ G  P++ T++ VL
Sbjct: 232 ELKLARKLLDEMPEKNVVSWTTMITGYVQEGESEAALNIFMEMIRDGGVMPNEGTFVNVL 291

Query: 36  SACSHSGLVEEG 1
            ACS    + EG
Sbjct: 292 GACSDLAGLGEG 303



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 38/137 (27%), Positives = 75/137 (54%), Gaps = 2/137 (1%)
 Frame = -2

Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEG 304
           M ER+V+TWTT+I GY++     EA ++F   +A+ +K N  T+  +++    L  + E 
Sbjct: 81  MLERDVITWTTVITGYIKCRLIVEARRLFD--RADAMK-NVVTWTAMVSGYMRLNQVLEA 137

Query: 303 KQIHQI--ISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWNTMIGAYA 130
           +++ +   +   + +      +A++   ++ G +  A ++F++  +R++V+WN MI  YA
Sbjct: 138 ERVDEARRLFDEMPKRDVISWTAMVAGLARNGRIDEARKIFDKMPERNVVSWNAMITGYA 197

Query: 129 HHGLGREAILLMEEMQE 79
            +    EA  L E M E
Sbjct: 198 KNMRLVEAFELFERMPE 214


>ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 618

 Score =  215 bits (547), Expect = 3e-54
 Identities = 97/161 (60%), Positives = 134/161 (83%)
 Frame = -2

Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEG 304
           M  RNVVTWTT++ GY+Q  QSE AL++F+GM  +GI+PNQ TF+  ++AC +LAGLSEG
Sbjct: 279 MPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEG 338

Query: 303 KQIHQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWNTMIGAYAHH 124
           +Q+HQ+I KT +Q   F+ES L+N+Y+KCGE+ +A ++FN S ++D+++WN MI AYAHH
Sbjct: 339 QQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDVISWNGMIAAYAHH 398

Query: 123 GLGREAILLMEEMQESGFKPDDVTYIGVLSACSHSGLVEEG 1
           G+G EAI L E+MQE+G+KP+DVTY+G+LSACSHSGLV+EG
Sbjct: 399 GVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEG 439



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 3/164 (1%)
 Frame = -2

Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEG 304
           M ERNV+ WTT++ G  + G   EA  +F GM            V   NA   ++G +  
Sbjct: 186 MPERNVMAWTTMVAGIARSGSVNEARALFDGMPERN--------VVSWNAM--ISGYARN 235

Query: 303 KQI---HQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWNTMIGAY 133
             I   H +  K   ++ A   + ++  + +   L  A+E+F++  +R++VTW TM+  Y
Sbjct: 236 HMIDEAHDLFMKMPTRDIASW-NIMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGY 294

Query: 132 AHHGLGREAILLMEEMQESGFKPDDVTYIGVLSACSHSGLVEEG 1
                   A+ L   M   G +P+ VT++G + ACS+   + EG
Sbjct: 295 LQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEG 338



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
 Frame = -2

Query: 477 ERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEGKQ 298
           E++V++W  +I  Y   G   EA+ ++  MQ  G KPN  T+V +L+AC     + EG +
Sbjct: 382 EKDVISWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLR 441

Query: 297 IHQIISKTVYQNSAFVE----SALLNMYSKCGELSIAEEMFN-RSTQRDLVTWNTMIGAY 133
           I + + K     S  V     + L+++ S+ G L  A+ + +    +     WN ++G  
Sbjct: 442 IFEYMVK---DRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGC 498

Query: 132 AHHG 121
             HG
Sbjct: 499 NSHG 502


>gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
          Length = 618

 Score =  215 bits (547), Expect = 3e-54
 Identities = 97/161 (60%), Positives = 133/161 (82%)
 Frame = -2

Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEG 304
           M  RNV+TWTT++ GY+Q  QSE AL+IF+GM  EGI+PNQ TF+  ++AC +LAGLSEG
Sbjct: 279 MPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEG 338

Query: 303 KQIHQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWNTMIGAYAHH 124
           +Q+HQ+I KT +Q   F+ES L+N+Y+KCGE+ +A ++F+ S ++D+++WN MI AYAHH
Sbjct: 339 QQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHH 398

Query: 123 GLGREAILLMEEMQESGFKPDDVTYIGVLSACSHSGLVEEG 1
           G+G EAI L E+MQE G+KP+DVTY+G+LSACSHSGLV+EG
Sbjct: 399 GVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEG 439



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
 Frame = -2

Query: 483 MHERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEG 304
           M ERNV+ WTT++ G  + G  +EA  +F GM            V   NA   ++G +  
Sbjct: 186 MPERNVMAWTTMVAGIARSGSVDEARALFDGMPERN--------VVSWNAM--ISGYARN 235

Query: 303 KQI---HQIISKTVYQNSAFVESALLNMYSKCGELSIAEEMFNRSTQRDLVTWNTMIGAY 133
            +I   H +  K   ++ A   + ++  + +  +L  A+++F++  +R+++TW TM+  Y
Sbjct: 236 HRIDEAHDLFMKMPTRDIASW-NIMITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGY 294

Query: 132 AHHGLGREAILLMEEMQESGFKPDDVTYIGVLSACSHSGLVEEG 1
                   A+ +   M   G +P+ VT++G + ACS+   + EG
Sbjct: 295 LQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEG 338



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
 Frame = -2

Query: 477 ERNVVTWTTLIMGYVQDGQSEEALKIFSGMQAEGIKPNQGTFVCILNACCDLAGLSEGKQ 298
           E++V++W  +I  Y   G   EA+ ++  MQ +G KPN  T+V +L+AC     + EG +
Sbjct: 382 EKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLR 441

Query: 297 IHQIISKTVYQNSAFVE----SALLNMYSKCGELSIAEEMFN-RSTQRDLVTWNTMIGAY 133
           I + + K     S  V     + L+++ S+ G L  A+ + +    +     WN ++G  
Sbjct: 442 IFEYMVK---DRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGC 498

Query: 132 AHHG 121
             HG
Sbjct: 499 NSHG 502


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