BLASTX nr result
ID: Coptis21_contig00028046
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00028046
(755 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containi... 338 6e-91
ref|XP_002326162.1| predicted protein [Populus trichocarpa] gi|2... 305 5e-81
ref|XP_002525196.1| pentatricopeptide repeat-containing protein,... 301 7e-80
dbj|BAC42187.2| unknown protein [Arabidopsis thaliana] 292 6e-77
ref|NP_195903.2| pentatricopeptide repeat-containing protein [Ar... 292 6e-77
>ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
chloroplastic [Vitis vinifera]
gi|297741486|emb|CBI32618.3| unnamed protein product
[Vitis vinifera]
Length = 842
Score = 338 bits (868), Expect = 6e-91
Identities = 166/252 (65%), Positives = 201/252 (79%), Gaps = 1/252 (0%)
Frame = -2
Query: 754 IKVLADAKMWQMALKVKEHMLSAGVTPNIVTWSSLISACANAGLVEQAIQVLEEMLLAGC 575
IKV ADAK+WQMALK+KE MLSAGV PN VTWS+LIS+CANAG+ EQAIQ+ +EMLLAGC
Sbjct: 359 IKVFADAKLWQMALKIKEDMLSAGVIPNTVTWSALISSCANAGITEQAIQLFKEMLLAGC 418
Query: 574 EPNSQCCNNLLYACVEACQYDRAFRIFESWRESGFLITSHTTMYNGNTNNNVCIGAADSS 395
EPNSQC N LL+ACVEACQYDRAFR+F+SW++S F S G T N +G
Sbjct: 419 EPNSQCYNILLHACVEACQYDRAFRLFQSWKDSRFQEIS------GGTGNGNTVGVELKH 472
Query: 394 ENGITNLRSCYS-SPYMSFAKSVPFAPTIATFNILMKACGTDYYRAKTLMDEIKLAGLSP 218
+N IT++ +C S S ++SF+KS PF PT T+NILMKACGTDYYRAK LMDE+K AGLSP
Sbjct: 473 QNCITSMPNCLSNSHHLSFSKSFPFTPTTTTYNILMKACGTDYYRAKALMDEMKTAGLSP 532
Query: 217 NQVSWSIMIDICGRTGNVGGSIQALKAMRDNSIKPDVIAYTTAIKACVENGSLTLAFSLF 38
N +SWSI+IDICG TGN+ G+++ LK MR+ IKPDV+AYTTAIK CVE+ +L +AFSLF
Sbjct: 533 NHISWSILIDICGGTGNIVGAVRILKTMREAGIKPDVVAYTTAIKYCVESKNLKIAFSLF 592
Query: 37 EEMKRYGVKPNL 2
EMKRY ++PNL
Sbjct: 593 AEMKRYQIQPNL 604
Score = 64.3 bits (155), Expect = 3e-08
Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 2/221 (0%)
Frame = -2
Query: 682 VTPNIVTWSSLISACANAGLVEQAIQVLEEMLLAGCEPNSQCCNNLLYACVEACQYDRAF 503
+ PN+ + ++I C +++ + EE+L PN N+L+ V Y F
Sbjct: 241 IGPNMYCYRTMIDVCGLCSHYQKSRYIYEELLAQKITPNIYVFNSLMNVNVHDLSY--TF 298
Query: 502 RIFESWRESGFLITSHTTMYNGNTNNNVCIGAADSSENGITNLRSCYSSPYMSFAKSVPF 323
++++ + G +T+ YN G D ++ +++ S+ +
Sbjct: 299 NVYKNMQNLG--VTADMASYNILLKACCVAGRVDLAQEIYREVQNLESNGMLKL------ 350
Query: 322 APTIATFNILMK--ACGTDYYRAKTLMDEIKLAGLSPNQVSWSIMIDICGRTGNVGGSIQ 149
+ T++ ++K A + A + +++ AG+ PN V+WS +I C G +IQ
Sbjct: 351 --DVFTYSTIIKVFADAKLWQMALKIKEDMLSAGVIPNTVTWSALISSCANAGITEQAIQ 408
Query: 148 ALKAMRDNSIKPDVIAYTTAIKACVENGSLTLAFSLFEEMK 26
K M +P+ Y + ACVE AF LF+ K
Sbjct: 409 LFKEMLLAGCEPNSQCYNILLHACVEACQYDRAFRLFQSWK 449
>ref|XP_002326162.1| predicted protein [Populus trichocarpa] gi|222833355|gb|EEE71832.1|
predicted protein [Populus trichocarpa]
Length = 828
Score = 305 bits (782), Expect = 5e-81
Identities = 149/252 (59%), Positives = 193/252 (76%), Gaps = 1/252 (0%)
Frame = -2
Query: 754 IKVLADAKMWQMALKVKEHMLSAGVTPNIVTWSSLISACANAGLVEQAIQVLEEMLLAGC 575
+K+ ADAKMWQMALK+KE MLS+GVTPN+ WSSLISACANAGLVEQAIQ+ EEMLL+GC
Sbjct: 371 VKIFADAKMWQMALKIKEDMLSSGVTPNMHIWSSLISACANAGLVEQAIQLFEEMLLSGC 430
Query: 574 EPNSQCCNNLLYACVEACQYDRAFRIFESWRESGFLITSHTTMYNGNTNNNVCIGAADSS 395
+PNSQCCN LL+ACV+ACQYDRAFR+F+ W+ S +++G+ + N + +
Sbjct: 431 KPNSQCCNILLHACVQACQYDRAFRLFQCWKGS-----EAQEVFHGDHSGNA--DEIEHA 483
Query: 394 ENGITNLRSCY-SSPYMSFAKSVPFAPTIATFNILMKACGTDYYRAKTLMDEIKLAGLSP 218
+ N+ + +S +++F K PF PT AT+++LMKACG+DY+RAK LMDE+K G+SP
Sbjct: 484 QKHCPNMTTIVPNSHHLNFIKKFPFTPTPATYHMLMKACGSDYHRAKALMDEMKTVGISP 543
Query: 217 NQVSWSIMIDICGRTGNVGGSIQALKAMRDNSIKPDVIAYTTAIKACVENGSLTLAFSLF 38
N +SWSI+IDICG +GNV G++Q LK MR ++PDV+AYTTAIK CVE +L LAFSLF
Sbjct: 544 NHISWSILIDICGVSGNVSGAVQILKNMRMAGVEPDVVAYTTAIKVCVETKNLKLAFSLF 603
Query: 37 EEMKRYGVKPNL 2
EMKR + PNL
Sbjct: 604 AEMKRCQINPNL 615
>ref|XP_002525196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223535493|gb|EEF37162.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 786
Score = 301 bits (772), Expect = 7e-80
Identities = 156/252 (61%), Positives = 192/252 (76%), Gaps = 1/252 (0%)
Frame = -2
Query: 754 IKVLADAKMWQMALKVKEHMLSAGVTPNIVTWSSLISACANAGLVEQAIQVLEEMLLAGC 575
IK+ ADAK+WQ+ALK+KE MLS+GVTPN TWSSLISA ANAGLV+QAI++ EEMLLAGC
Sbjct: 303 IKIFADAKLWQLALKIKEDMLSSGVTPNTFTWSSLISASANAGLVDQAIKLFEEMLLAGC 362
Query: 574 EPNSQCCNNLLYACVEACQYDRAFRIFESWRESGFLITSHTTMYNGNTNN-NVCIGAADS 398
PNS CCN LL+ACVEACQYDRAFR+F +W+ S T TT YN ++ + + A +
Sbjct: 363 VPNSHCCNILLHACVEACQYDRAFRLFNAWKGSEIQNT-FTTDYNCPVDDISSAMHACED 421
Query: 397 SENGITNLRSCYSSPYMSFAKSVPFAPTIATFNILMKACGTDYYRAKTLMDEIKLAGLSP 218
+ NL S +S ++SF K PF P+ AT+N LMKACG+DY RAK LMDE++ GLSP
Sbjct: 422 YIITVPNLAS--NSLHLSFLKKFPFTPSSATYNTLMKACGSDYNRAKALMDEMQAVGLSP 479
Query: 217 NQVSWSIMIDICGRTGNVGGSIQALKAMRDNSIKPDVIAYTTAIKACVENGSLTLAFSLF 38
N +SWSI+IDICG +GN+ G+IQ LK MR I+PDVIAYTTAIK VE+ +L +AFSLF
Sbjct: 480 NHISWSILIDICGSSGNMEGAIQILKNMRMAGIEPDVIAYTTAIKVSVESKNLKMAFSLF 539
Query: 37 EEMKRYGVKPNL 2
EMKRY +KPNL
Sbjct: 540 AEMKRYQLKPNL 551
>dbj|BAC42187.2| unknown protein [Arabidopsis thaliana]
Length = 852
Score = 292 bits (747), Expect = 6e-77
Identities = 147/252 (58%), Positives = 184/252 (73%), Gaps = 2/252 (0%)
Frame = -2
Query: 754 IKVLADAKMWQMALKVKEHMLSAGVTPNIVTWSSLISACANAGLVEQAIQVLEEMLLAGC 575
IKV ADAKMW+ ALKVK+ M S GVTPN TWSSLISACANAGLVEQA + EEML +GC
Sbjct: 381 IKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGC 440
Query: 574 EPNSQCCNNLLYACVEACQYDRAFRIFESWRESGF--LITSHTTMYNGNTNNNVCIGAAD 401
EPNSQC N LL+ACVEACQYDRAFR+F+SW+ S + + + G T++ + +
Sbjct: 441 EPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADDIVSKGRTSSPNIL--KN 498
Query: 400 SSENGITNLRSCYSSPYMSFAKSVPFAPTIATFNILMKACGTDYYRAKTLMDEIKLAGLS 221
+ + N S +SPY+ +K F PT AT+NIL+KACGTDYYR K LMDE+K GLS
Sbjct: 499 NGPGSLVNRNS--NSPYIQASKRFCFKPTTATYNILLKACGTDYYRGKELMDEMKSLGLS 556
Query: 220 PNQVSWSIMIDICGRTGNVGGSIQALKAMRDNSIKPDVIAYTTAIKACVENGSLTLAFSL 41
PNQ++WS +ID+CG +G+V G+++ L+ M +PDV+AYTTAIK C EN L LAFSL
Sbjct: 557 PNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKICAENKCLKLAFSL 616
Query: 40 FEEMKRYGVKPN 5
FEEM+RY +KPN
Sbjct: 617 FEEMRRYQIKPN 628
Score = 55.8 bits (133), Expect = 9e-06
Identities = 49/226 (21%), Positives = 93/226 (41%)
Frame = -2
Query: 679 TPNIVTWSSLISACANAGLVEQAIQVLEEMLLAGCEPNSQCCNNLLYACVEACQYDRAFR 500
TPN+ ++I C G ++ + E++L +PN N+L+ V + +
Sbjct: 264 TPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIYVINSLMN--VNSHDLGYTLK 321
Query: 499 IFESWRESGFLITSHTTMYNGNTNNNVCIGAADSSENGITNLRSCYSSPYMSFAKSVPFA 320
++++ + +T+ T YN G D +++ + SS + + +
Sbjct: 322 VYKNMQILD--VTADMTSYNILLKTCCLAGRVDLAQDIYKEAKRMESSGLLKL-DAFTYC 378
Query: 319 PTIATFNILMKACGTDYYRAKTLMDEIKLAGLSPNQVSWSIMIDICGRTGNVGGSIQALK 140
I F A + A + D++K G++PN +WS +I C G V + +
Sbjct: 379 TIIKVF-----ADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFE 433
Query: 139 AMRDNSIKPDVIAYTTAIKACVENGSLTLAFSLFEEMKRYGVKPNL 2
M + +P+ + + ACVE AF LF+ K V +L
Sbjct: 434 EMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESL 479
>ref|NP_195903.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332278227|sp|Q8GYL7.3|PP361_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At5g02830, chloroplastic; Flags: Precursor
gi|332003140|gb|AED90523.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 852
Score = 292 bits (747), Expect = 6e-77
Identities = 147/252 (58%), Positives = 184/252 (73%), Gaps = 2/252 (0%)
Frame = -2
Query: 754 IKVLADAKMWQMALKVKEHMLSAGVTPNIVTWSSLISACANAGLVEQAIQVLEEMLLAGC 575
IKV ADAKMW+ ALKVK+ M S GVTPN TWSSLISACANAGLVEQA + EEML +GC
Sbjct: 381 IKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGC 440
Query: 574 EPNSQCCNNLLYACVEACQYDRAFRIFESWRESGF--LITSHTTMYNGNTNNNVCIGAAD 401
EPNSQC N LL+ACVEACQYDRAFR+F+SW+ S + + + G T++ + +
Sbjct: 441 EPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADDIVSKGRTSSPNIL--KN 498
Query: 400 SSENGITNLRSCYSSPYMSFAKSVPFAPTIATFNILMKACGTDYYRAKTLMDEIKLAGLS 221
+ + N S +SPY+ +K F PT AT+NIL+KACGTDYYR K LMDE+K GLS
Sbjct: 499 NGPGSLVNRNS--NSPYIQASKRFCFKPTTATYNILLKACGTDYYRGKELMDEMKSLGLS 556
Query: 220 PNQVSWSIMIDICGRTGNVGGSIQALKAMRDNSIKPDVIAYTTAIKACVENGSLTLAFSL 41
PNQ++WS +ID+CG +G+V G+++ L+ M +PDV+AYTTAIK C EN L LAFSL
Sbjct: 557 PNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKICAENKCLKLAFSL 616
Query: 40 FEEMKRYGVKPN 5
FEEM+RY +KPN
Sbjct: 617 FEEMRRYQIKPN 628
Score = 55.8 bits (133), Expect = 9e-06
Identities = 49/226 (21%), Positives = 93/226 (41%)
Frame = -2
Query: 679 TPNIVTWSSLISACANAGLVEQAIQVLEEMLLAGCEPNSQCCNNLLYACVEACQYDRAFR 500
TPN+ ++I C G ++ + E++L +PN N+L+ V + +
Sbjct: 264 TPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIYVINSLMN--VNSHDLGYTLK 321
Query: 499 IFESWRESGFLITSHTTMYNGNTNNNVCIGAADSSENGITNLRSCYSSPYMSFAKSVPFA 320
++++ + +T+ T YN G D +++ + SS + + +
Sbjct: 322 VYKNMQILD--VTADMTSYNILLKTCCLAGRVDLAQDIYKEAKRMESSGLLKL-DAFTYC 378
Query: 319 PTIATFNILMKACGTDYYRAKTLMDEIKLAGLSPNQVSWSIMIDICGRTGNVGGSIQALK 140
I F A + A + D++K G++PN +WS +I C G V + +
Sbjct: 379 TIIKVF-----ADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFE 433
Query: 139 AMRDNSIKPDVIAYTTAIKACVENGSLTLAFSLFEEMKRYGVKPNL 2
M + +P+ + + ACVE AF LF+ K V +L
Sbjct: 434 EMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESL 479