BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028037
         (741 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002875331.1| hypothetical protein ARALYDRAFT_484438 [Arab...   304   1e-80
ref|NP_189302.1| DNA cross-link repair protein SNM1 [Arabidopsis...   303   2e-80
emb|CAA66406.1| orf12 [Arabidopsis thaliana]                          303   2e-80
dbj|BAH19739.1| AT3G26680 [Arabidopsis thaliana]                      303   2e-80
gb|EEE60929.1| hypothetical protein OsJ_14663 [Oryza sativa Japo...   281   8e-74

>ref|XP_002875331.1| hypothetical protein ARALYDRAFT_484438 [Arabidopsis lyrata subsp.
           lyrata] gi|297321169|gb|EFH51590.1| hypothetical protein
           ARALYDRAFT_484438 [Arabidopsis lyrata subsp. lyrata]
          Length = 483

 Score =  304 bits (778), Expect = 1e-80
 Identities = 154/281 (54%), Positives = 194/281 (69%), Gaps = 44/281 (15%)
 Frame = +3

Query: 30  EDELLDNNINDSVSENLDENGFPSLDSAKK------FSSDFYSSGTDWSCLVT--ENAES 185
           +++   +  ND V+E  +E GF   D   +      F+SDFY +G+DWSCLV   E   S
Sbjct: 8   DEDWFGSRFNDGVNEE-EEEGFVFYDDVGENEEEEGFASDFYKAGSDWSCLVEDEETVCS 66

Query: 186 SEK-KKMKQADLFQMWGFKK--PDTSKKIQM----------------------------- 269
           SEK KKMKQA+LFQ+WG ++  PDT+KK++                              
Sbjct: 67  SEKNKKMKQANLFQIWGLQENSPDTTKKMKQTDLFQSWGLQKPSPFTSPASNSSKKTTSA 126

Query: 270 ----KTDLGFPSQQRRACPFYKKIPGTPFTVDAFRFGLIEGCSAYFLSHFHYDHYGGLSK 437
               + D  F +   R CPFYKK+PGTPFTVDAFR+G ++GCSAYFL+HFH DHY GL+K
Sbjct: 127 LGKRRRDSSFGNDSPRPCPFYKKLPGTPFTVDAFRYGCVQGCSAYFLTHFHADHYIGLTK 186

Query: 438 GWSHGSIYCTPLTARLLRMCLSVNPTFIYPLELDVEHNIEGVKVTMLEANHCPGAALIHF 617
            WSHG IYC+ LT+RLLR+ LSV+P+FI+PLELDVE+ I G+KVT++EANHCPGAALIHF
Sbjct: 187 AWSHGPIYCSSLTSRLLRLSLSVDPSFIHPLELDVEYTINGIKVTLIEANHCPGAALIHF 246

Query: 618 RLIDGRCYLHTGDFRASKLMQSHPLLASHRVNLLYLDTTYC 740
           RL+DG CYLHTGDFRASK MQ+HPLL + RV++LYLDTTYC
Sbjct: 247 RLLDGTCYLHTGDFRASKKMQTHPLLFNQRVHVLYLDTTYC 287


>ref|NP_189302.1| DNA cross-link repair protein SNM1 [Arabidopsis thaliana]
           gi|30688447|ref|NP_850635.1| DNA cross-link repair
           protein SNM1 [Arabidopsis thaliana]
           gi|79313637|ref|NP_001030773.1| DNA cross-link repair
           protein SNM1 [Arabidopsis thaliana]
           gi|73621911|sp|Q38961.1|SNM1_ARATH RecName: Full=DNA
           cross-link repair protein SNM1; Short=AtSNM1
           gi|1402886|emb|CAA66817.1| hypothetical protein
           [Arabidopsis thaliana] gi|11994302|dbj|BAB01732.1|
           unnamed protein product [Arabidopsis thaliana]
           gi|26449933|dbj|BAC42087.1| unknown protein [Arabidopsis
           thaliana] gi|28827378|gb|AAO50533.1| unknown protein
           [Arabidopsis thaliana] gi|332643675|gb|AEE77196.1| DNA
           cross-link repair protein SNM1 [Arabidopsis thaliana]
           gi|332643676|gb|AEE77197.1| DNA cross-link repair
           protein SNM1 [Arabidopsis thaliana]
           gi|332643677|gb|AEE77198.1| DNA cross-link repair
           protein SNM1 [Arabidopsis thaliana]
          Length = 484

 Score =  303 bits (777), Expect = 2e-80
 Identities = 150/264 (56%), Positives = 184/264 (69%), Gaps = 36/264 (13%)
 Frame = +3

Query: 57  NDSVSENLDENGFPSLDSAKKFSSDFYSSGTDWSCLVT-ENAESSEKKKMKQADLFQMWG 233
           ND V EN +E GF         +SDFY +G+DWSCLV  E   SS  KKMKQ++LFQ+WG
Sbjct: 34  NDDVEENEEEEGF---------ASDFYKAGSDWSCLVEDEETVSSSVKKMKQSNLFQIWG 84

Query: 234 FKK--PDTSKKIQM---------------------------------KTDLGFPSQQRRA 308
            ++  PDT+KK++                                  + D  F +   R 
Sbjct: 85  LQENSPDTTKKMKQTDLFQSWGLQKPSPFTSPASNSAKKTTSALGKRRRDSSFSNDSPRP 144

Query: 309 CPFYKKIPGTPFTVDAFRFGLIEGCSAYFLSHFHYDHYGGLSKGWSHGSIYCTPLTARLL 488
           CPFYKK+PGTPFTVDAFR+G ++GCSAYFL+HFH DHY GL+K WSHG IYC+ LT+RLL
Sbjct: 145 CPFYKKLPGTPFTVDAFRYGCVQGCSAYFLTHFHADHYIGLTKAWSHGPIYCSSLTSRLL 204

Query: 489 RMCLSVNPTFIYPLELDVEHNIEGVKVTMLEANHCPGAALIHFRLIDGRCYLHTGDFRAS 668
           R+ LSVNP+ I+PLELDVE+ I G+KVT++EANHCPGAALIHFRL+DG CYLHTGDFRAS
Sbjct: 205 RLSLSVNPSSIHPLELDVEYTINGIKVTLIEANHCPGAALIHFRLLDGTCYLHTGDFRAS 264

Query: 669 KLMQSHPLLASHRVNLLYLDTTYC 740
           K MQ+HPLL + RV++LYLDTTYC
Sbjct: 265 KQMQTHPLLFNQRVHVLYLDTTYC 288


>emb|CAA66406.1| orf12 [Arabidopsis thaliana]
          Length = 484

 Score =  303 bits (777), Expect = 2e-80
 Identities = 150/264 (56%), Positives = 184/264 (69%), Gaps = 36/264 (13%)
 Frame = +3

Query: 57  NDSVSENLDENGFPSLDSAKKFSSDFYSSGTDWSCLVT-ENAESSEKKKMKQADLFQMWG 233
           ND V EN +E GF         +SDFY +G+DWSCLV  E   SS  KKMKQ++LFQ+WG
Sbjct: 34  NDDVEENEEEEGF---------ASDFYKAGSDWSCLVEDEETVSSSVKKMKQSNLFQIWG 84

Query: 234 FKK--PDTSKKIQM---------------------------------KTDLGFPSQQRRA 308
            ++  PDT+KK++                                  + D  F +   R 
Sbjct: 85  LQENSPDTTKKMKQTDLFQSWGLQKPSPFTSPASNSAKKTTSALGKRRRDSSFSNDSPRP 144

Query: 309 CPFYKKIPGTPFTVDAFRFGLIEGCSAYFLSHFHYDHYGGLSKGWSHGSIYCTPLTARLL 488
           CPFYKK+PGTPFTVDAFR+G ++GCSAYFL+HFH DHY GL+K WSHG IYC+ LT+RLL
Sbjct: 145 CPFYKKLPGTPFTVDAFRYGCVQGCSAYFLTHFHADHYIGLTKAWSHGPIYCSSLTSRLL 204

Query: 489 RMCLSVNPTFIYPLELDVEHNIEGVKVTMLEANHCPGAALIHFRLIDGRCYLHTGDFRAS 668
           R+ LSVNP+ I+PLELDVE+ I G+KVT++EANHCPGAALIHFRL+DG CYLHTGDFRAS
Sbjct: 205 RLSLSVNPSSIHPLELDVEYTINGIKVTLIEANHCPGAALIHFRLLDGTCYLHTGDFRAS 264

Query: 669 KLMQSHPLLASHRVNLLYLDTTYC 740
           K MQ+HPLL + RV++LYLDTTYC
Sbjct: 265 KQMQTHPLLFNQRVHVLYLDTTYC 288


>dbj|BAH19739.1| AT3G26680 [Arabidopsis thaliana]
          Length = 484

 Score =  303 bits (776), Expect = 2e-80
 Identities = 150/264 (56%), Positives = 183/264 (69%), Gaps = 36/264 (13%)
 Frame = +3

Query: 57  NDSVSENLDENGFPSLDSAKKFSSDFYSSGTDWSCLVT-ENAESSEKKKMKQADLFQMWG 233
           ND V EN +E GF         +SDFY +G+DWSCLV  E   SS  KKMKQ++LFQ+WG
Sbjct: 34  NDDVEENEEEEGF---------ASDFYKAGSDWSCLVEDEETVSSSVKKMKQSNLFQIWG 84

Query: 234 FKK--PDTSKKIQM---------------------------------KTDLGFPSQQRRA 308
            ++  PDT+KK++                                  + D  F +   R 
Sbjct: 85  LQENSPDTTKKMKQTDLFQSWGLQKPSPFTSPASNSAKKTTSALGKRRRDSSFSNDSPRP 144

Query: 309 CPFYKKIPGTPFTVDAFRFGLIEGCSAYFLSHFHYDHYGGLSKGWSHGSIYCTPLTARLL 488
           CPFYKK+PGTPFTVDAFR+G ++GCSAYFL+HFH DHY GL+K WSHG IYC+ LT+RLL
Sbjct: 145 CPFYKKLPGTPFTVDAFRYGCVQGCSAYFLTHFHADHYIGLTKAWSHGPIYCSSLTSRLL 204

Query: 489 RMCLSVNPTFIYPLELDVEHNIEGVKVTMLEANHCPGAALIHFRLIDGRCYLHTGDFRAS 668
           R+ LSVNP+ I+PLELDVE+ I G+KVT++EANHCPGAALIHFRL+DG CYLHTGDFRAS
Sbjct: 205 RLSLSVNPSSIHPLELDVEYTINGIKVTLIEANHCPGAALIHFRLLDGTCYLHTGDFRAS 264

Query: 669 KLMQSHPLLASHRVNLLYLDTTYC 740
           K MQ+HPLL + RV +LYLDTTYC
Sbjct: 265 KQMQTHPLLFNQRVRVLYLDTTYC 288


>gb|EEE60929.1| hypothetical protein OsJ_14663 [Oryza sativa Japonica Group]
          Length = 517

 Score =  281 bits (720), Expect = 8e-74
 Identities = 147/266 (55%), Positives = 178/266 (66%), Gaps = 41/266 (15%)
 Frame = +3

Query: 66  VSENLDENGFP------SLDSAKKFSSDFYSSGTDWSCLVTE-----NAESSEKKK---- 200
           V + LD+NGFP      +  +A  F+ DFY SGTDWS L+       ++E S K K    
Sbjct: 19  VPDGLDDNGFPLPSSPTAATAATSFADDFYRSGTDWSSLLAAPSPPPSSEESGKNKSGDS 78

Query: 201 MKQADLFQMWGF-KKPDTSKKI-----------QMKTDLGFPSQQRR------------- 305
           + Q  LFQ WG  ++P   +++                  +P ++RR             
Sbjct: 79  LVQRSLFQAWGIDRRPRREEEVAGVAGGAGAGASSAPSGSWPGRKRRRGGEVEAAADRKP 138

Query: 306 -ACPFYKKIPGTPFTVDAFRFGLIEGCSAYFLSHFHYDHYGGLSKGWSHGSIYCTPLTAR 482
            ACPFYKKIPGTPFTVDAFR+G +EGC+AYFLSHFH+DHYGGL+K W HG IYCT LTAR
Sbjct: 139 LACPFYKKIPGTPFTVDAFRYGAVEGCNAYFLSHFHHDHYGGLTKKWCHGPIYCTALTAR 198

Query: 483 LLRMCLSVNPTFIYPLELDVEHNIEGVKVTMLEANHCPGAALIHFRLIDGRCYLHTGDFR 662
           L++MCLSVNP +I PLELD E+ IEGV VT+LEANHCPGAALIHFRL DG+ YLHTGDFR
Sbjct: 199 LVKMCLSVNPEYICPLELDKEYVIEGVSVTLLEANHCPGAALIHFRLGDGKKYLHTGDFR 258

Query: 663 ASKLMQSHPLLASHRVNLLYLDTTYC 740
           ASK MQ +PLL   ++NLLYLDTTYC
Sbjct: 259 ASKSMQLYPLLQRGQINLLYLDTTYC 284