BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028034
         (600 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat...    83   3e-14
ref|XP_002534039.1| pentatricopeptide repeat-containing protein,...    81   2e-13
ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat...    80   3e-13
emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]    80   3e-13
ref|XP_002307160.1| predicted protein [Populus trichocarpa] gi|2...    79   5e-13

>ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g08310, mitochondrial-like [Glycine max]
          Length = 942

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 40/102 (39%), Positives = 65/102 (63%)
 Frame = +3

Query: 24   YFKVMKEIEMRPDPYVYVALISGSISNGNLLLALEIMKEMVQNKQFPVPSDNNYCLMIDA 203
            Y + M++ +M+PD ++Y+ALIS  +S+ +L  A EI KEMV +  FP   D NY +++DA
Sbjct: 734  YLREMEQKDMKPDSFIYIALISSFLSDMDLASAFEIFKEMVYSGYFPESHDKNYSIVMDA 793

Query: 204  VSKLSENPTTSLDVKNLTLGGGIPAICSVSEQGGIDGLDPNG 329
            + K S++  TS  ++ L   G +P  C+V  +G  +GLD +G
Sbjct: 794  IDKFSKDHRTSSGIQVLMEEGKLPTHCAVKSKGFKEGLDDDG 835


>ref|XP_002534039.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223525946|gb|EEF28343.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 634

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 40/93 (43%), Positives = 58/93 (62%)
 Frame = +3

Query: 3   KSDMGHIYFKVMKEIEMRPDPYVYVALISGSISNGNLLLALEIMKEMVQNKQFPVPSDNN 182
           K +   I+F  M+E EM PD YVY++L+S  ++  N  +A EI+K+MV  + FP P D N
Sbjct: 526 KPEAALIHFHEMEEEEMEPDTYVYISLVSAFVNISNFPMAFEILKKMVDRRNFPDPLDKN 585

Query: 183 YCLMIDAVSKLSENPTTSLDVKNLTLGGGIPAI 281
             ++ DA+ KLS++  TS  VK+L   G IP I
Sbjct: 586 CIIIRDAILKLSKDARTSSSVKSLIASGSIPTI 618


>ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g08310, mitochondrial [Vitis vinifera]
            gi|296085293|emb|CBI29025.3| unnamed protein product
            [Vitis vinifera]
          Length = 854

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 48/102 (47%), Positives = 62/102 (60%)
 Frame = +3

Query: 9    DMGHIYFKVMKEIEMRPDPYVYVALISGSISNGNLLLALEIMKEMVQNKQFPVPSDNNYC 188
            D   +YF+ M E E  PD  VYVALI+  ISN N  LA EI+KEMV   +FP P D N  
Sbjct: 754  DAALLYFREMGERET-PDTIVYVALITSFISNKNPTLAFEILKEMVAKGKFPDPLDKNDL 812

Query: 189  LMIDAVSKLSENPTTSLDVKNLTLGGGIPAICSVSEQGGIDG 314
             + DA+ +L+E+ +TS +VKNL   G IP I  +S+ G   G
Sbjct: 813  PLRDAILELAEDASTSSNVKNLIAEGRIPTIVCLSDVGSEGG 854


>emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 48/102 (47%), Positives = 62/102 (60%)
 Frame = +3

Query: 9    DMGHIYFKVMKEIEMRPDPYVYVALISGSISNGNLLLALEIMKEMVQNKQFPVPSDNNYC 188
            D   +YF+ M E E  PD  VYVALI+  ISN N  LA EI+KEMV   +FP P D N  
Sbjct: 714  DAALLYFREMGERET-PDTIVYVALITSFISNKNPTLAFEILKEMVAKGKFPDPLDKNDL 772

Query: 189  LMIDAVSKLSENPTTSLDVKNLTLGGGIPAICSVSEQGGIDG 314
             + DA+ +L+E+ +TS +VKNL   G IP I  +S+ G   G
Sbjct: 773  PLRDAILELAEDASTSSNVKNLIAEGRIPTIVCLSDVGSEGG 814


>ref|XP_002307160.1| predicted protein [Populus trichocarpa] gi|222856609|gb|EEE94156.1|
           predicted protein [Populus trichocarpa]
          Length = 726

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 42/101 (41%), Positives = 63/101 (62%)
 Frame = +3

Query: 21  IYFKVMKEIEMRPDPYVYVALISGSISNGNLLLALEIMKEMVQNKQFPVPSDNNYCLMID 200
           +Y + M+E EM+PD YVYV L++  + + N  LA EI++EMV   +FP   D N+  + +
Sbjct: 625 VYLREMEEREMKPDTYVYVGLLNAFLVDSNQPLAFEILQEMVDKGKFPDLHDKNHISVRN 684

Query: 201 AVSKLSENPTTSLDVKNLTLGGGIPAICSVSEQGGIDGLDP 323
           A+ K SE+  TS  +KNL   G IP+  S+S  G  DG++P
Sbjct: 685 AILKFSEDARTSSSIKNLLAKGSIPS-ASLSVTGITDGVEP 724