BLASTX nr result

ID: Coptis21_contig00028009 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00028009
         (1345 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285659.1| PREDICTED: E3 ubiquitin-protein ligase SINAT...    60   1e-06
emb|CAN66717.1| hypothetical protein VITISV_039358 [Vitis vinifera]    60   2e-06
ref|XP_002280243.1| PREDICTED: E3 ubiquitin-protein ligase SINAT...    57   8e-06

>ref|XP_002285659.1| PREDICTED: E3 ubiquitin-protein ligase SINAT2 [Vitis vinifera]
           gi|297746416|emb|CBI16472.3| unnamed protein product
           [Vitis vinifera]
          Length = 308

 Score = 60.5 bits (145), Expect = 1e-06
 Identities = 29/55 (52%), Positives = 36/55 (65%)
 Frame = -1

Query: 166 MAPGGRICKEVLESLTTVTDYDTVTAKADVKSSASARVTLTSGGKLGISSTNGVH 2
           MAPGG ICKEV ES +   DYD  TA  +++SS   + T   GGK G+ ST+GVH
Sbjct: 1   MAPGGGICKEVCESRSAFADYDVTTANLELRSSPFRKATTGVGGKHGMPSTSGVH 55


>emb|CAN66717.1| hypothetical protein VITISV_039358 [Vitis vinifera]
          Length = 308

 Score = 59.7 bits (143), Expect = 2e-06
 Identities = 29/55 (52%), Positives = 35/55 (63%)
 Frame = -1

Query: 166 MAPGGRICKEVLESLTTVTDYDTVTAKADVKSSASARVTLTSGGKLGISSTNGVH 2
           MAPGG ICKEV ES +   DYD  TA  +++SS   + T   GGK G  ST+GVH
Sbjct: 1   MAPGGGICKEVCESRSAFADYDVTTANLELRSSPFRKATTGVGGKHGXPSTSGVH 55


>ref|XP_002280243.1| PREDICTED: E3 ubiquitin-protein ligase SINAT2 isoform 1 [Vitis
           vinifera] gi|4584257|emb|CAB40578.1| SINA2p [Vitis
           vinifera] gi|297739816|emb|CBI29998.3| unnamed protein
           product [Vitis vinifera]
          Length = 315

 Score = 57.4 bits (137), Expect = 8e-06
 Identities = 32/55 (58%), Positives = 35/55 (63%)
 Frame = -1

Query: 166 MAPGGRICKEVLESLTTVTDYDTVTAKADVKSSASARVTLTSGGKLGISSTNGVH 2
           MAPGG   KEVLES +TVTDYD    KAD  +   A+ T    GK GISS NGVH
Sbjct: 1   MAPGGSTYKEVLESHSTVTDYDIAMTKADT-NLTPAKTTAGLSGKKGISSPNGVH 54


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