BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027969
         (389 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...    55   4e-06
gb|AAP54617.2| retrotransposon protein, putative, unclassified [...    55   4e-06
ref|XP_002438569.1| hypothetical protein SORBIDRAFT_10g022040 [S...    55   6e-06
ref|XP_002438099.1| hypothetical protein SORBIDRAFT_10g007985 [S...    55   6e-06
gb|EAZ07429.1| hypothetical protein OsI_29683 [Oryza sativa Indi...    55   8e-06

>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
           Japonica Group]
          Length = 1382

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
 Frame = -1

Query: 302 WIGCYFYGSPYRPTRDISWNPVRVLENSTY-PIIIRGDLNVTLSSDE-LGGRPYDFTDGE 129
           W   + YG P R  R   WN +R L +    P +  GD N  L  DE LG R       +
Sbjct: 105 WRISFVYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQ 164

Query: 128 PARTIINDIGLLDIGYKGNPFTWSNKR 48
             R+ ++D GL+D+G+ G  FTWSNK+
Sbjct: 165 HFRSCLDDCGLIDLGFVGPKFTWSNKQ 191


>gb|AAP54617.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group] gi|125575397|gb|EAZ16681.1| hypothetical
           protein OsJ_32156 [Oryza sativa Japonica Group]
          Length = 1339

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
 Frame = -1

Query: 302 WIGCYFYGSPYRPTRDISWNPVRVLENSTY-PIIIRGDLNVTLSSDE-LGGRPYDFTDGE 129
           W   + YG P R  R   WN +R L +    P +  GD N  L  DE LG R       +
Sbjct: 62  WRISFVYGEPKRELRHFFWNLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQ 121

Query: 128 PARTIINDIGLLDIGYKGNPFTWSNKR 48
             R+ ++D GL+D+G+ G  FTWSNK+
Sbjct: 122 HFRSCLDDCGLIDLGFVGPKFTWSNKQ 148


>ref|XP_002438569.1| hypothetical protein SORBIDRAFT_10g022040 [Sorghum bicolor]
           gi|241916792|gb|EER89936.1| hypothetical protein
           SORBIDRAFT_10g022040 [Sorghum bicolor]
          Length = 1088

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
 Frame = -1

Query: 284 YGSPYRPTRDISWNPVR--VLENSTYPIIIRGDLNVTLS-SDELGGRPYDFTDGEPARTI 114
           YG P+R      W  +R  V+ N   P+I  GD+N  ++ +++LG RP +         +
Sbjct: 110 YGDPHRRRTAWIWRQIRHFVMSNQDLPVICMGDMNNIMNVTEKLGPRPANQRLISNFCCL 169

Query: 113 INDIGLLDIGYKGNPFTWSNKR 48
           + D G  D+GY G  +TWSNKR
Sbjct: 170 VKDCGFFDLGYHGPAYTWSNKR 191


>ref|XP_002438099.1| hypothetical protein SORBIDRAFT_10g007985 [Sorghum bicolor]
           gi|241916322|gb|EER89466.1| hypothetical protein
           SORBIDRAFT_10g007985 [Sorghum bicolor]
          Length = 649

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
 Frame = -1

Query: 302 WIGCYFYGSPYRPTRDISWNPVRVLEN-STYPIIIRGDLNVTLSSDE-LGGRPYDFTDGE 129
           W    FYG P R  R  SW+ ++ L   S  P +  GD N  L + E  GG+       +
Sbjct: 366 WRFTGFYGEPRRELRGRSWDCLKFLNTQSELPWLCTGDFNEVLEAHEQFGGQSRSERQMD 425

Query: 128 PARTIINDIGLLDIGYKGNPFTWSNKRAFLDNIQ 27
             R  +   GL+D+G+ G P+TW N++  ++N++
Sbjct: 426 GFREAVQVCGLMDLGFIGLPYTWDNRQEGINNVK 459


>gb|EAZ07429.1| hypothetical protein OsI_29683 [Oryza sativa Indica Group]
          Length = 318

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
 Frame = -1

Query: 284 YGSPYRPTRDISWNPVRVL-ENSTYPIIIRGDLNVTL-SSDELGGRPYDFTDGEPARTII 111
           YG P    R + W  +  L ++ST P ++ GD N  L   + L   P      +  R ++
Sbjct: 88  YGEPRTENRHLMWQHLSSLRQSSTLPWVVLGDFNEALWQFEHLSKNPRSEIQMQAFRDVL 147

Query: 110 NDIGLLDIGYKGNPFTWSNKRAFLDNIQ 27
           +   L+D+G++GNPFT+ N+R   +N+Q
Sbjct: 148 DVCNLIDLGFEGNPFTYDNRRKGSNNVQ 175