BLASTX nr result

ID: Coptis21_contig00027966 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027966
         (464 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002316422.1| predicted protein [Populus trichocarpa] gi|2...    74   2e-11
ref|XP_003579903.1| PREDICTED: uncharacterized protein LOC100821...    66   3e-09
ref|XP_003618525.1| hypothetical protein MTR_6g012640 [Medicago ...    64   1e-08
gb|ACG46097.1| hypothetical protein [Zea mays]                         62   5e-08
ref|XP_002877152.1| hypothetical protein ARALYDRAFT_484672 [Arab...    61   8e-08

>ref|XP_002316422.1| predicted protein [Populus trichocarpa] gi|222865462|gb|EEF02593.1|
           predicted protein [Populus trichocarpa]
          Length = 53

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 36/53 (67%), Positives = 42/53 (79%)
 Frame = -2

Query: 424 MNQNLSGLLIGILGAVITLSAYTQTLISTTPCIGIGLFVLTFGLLVKEGLISL 266
           MN+NL    IG++GA ITLSAY+QT +S T CI IGLFVL FGLLV+EG ISL
Sbjct: 1   MNRNLGAFWIGLVGATITLSAYSQTFVSPTQCITIGLFVLMFGLLVREGFISL 53


>ref|XP_003579903.1| PREDICTED: uncharacterized protein LOC100821668 [Brachypodium
           distachyon]
          Length = 53

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 32/52 (61%), Positives = 40/52 (76%)
 Frame = -2

Query: 424 MNQNLSGLLIGILGAVITLSAYTQTLISTTPCIGIGLFVLTFGLLVKEGLIS 269
           M++NLSGLLIG +GA +TL AY QTL+S+T CIG GL VL   L +KEG+ S
Sbjct: 1   MDRNLSGLLIGCVGAAMTLLAYEQTLVSSTQCIGAGLVVLICALCIKEGIFS 52


>ref|XP_003618525.1| hypothetical protein MTR_6g012640 [Medicago truncatula]
           gi|355493540|gb|AES74743.1| hypothetical protein
           MTR_6g012640 [Medicago truncatula]
          Length = 77

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 34/54 (62%), Positives = 39/54 (72%)
 Frame = -2

Query: 427 KMNQNLSGLLIGILGAVITLSAYTQTLISTTPCIGIGLFVLTFGLLVKEGLISL 266
           KM+QN   LLIG++GA  TL AY+QT IS +  I IGL VL FGLLV EGLI L
Sbjct: 20  KMSQNTKALLIGLIGAAFTLFAYSQTFISPSQSITIGLLVLMFGLLVGEGLIPL 73


>gb|ACG46097.1| hypothetical protein [Zea mays]
          Length = 53

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 28/53 (52%), Positives = 37/53 (69%)
 Frame = -2

Query: 424 MNQNLSGLLIGILGAVITLSAYTQTLISTTPCIGIGLFVLTFGLLVKEGLISL 266
           M++NLSG LIG LG  +TL AY QT +++T C+  G  V+ F L VKEG +SL
Sbjct: 1   MDRNLSGFLIGCLGTAVTLLAYQQTAVTSTQCVAAGFVVILFALFVKEGFLSL 53


>ref|XP_002877152.1| hypothetical protein ARALYDRAFT_484672 [Arabidopsis lyrata subsp.
           lyrata] gi|297322990|gb|EFH53411.1| hypothetical protein
           ARALYDRAFT_484672 [Arabidopsis lyrata subsp. lyrata]
          Length = 84

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 29/51 (56%), Positives = 38/51 (74%)
 Frame = -2

Query: 418 QNLSGLLIGILGAVITLSAYTQTLISTTPCIGIGLFVLTFGLLVKEGLISL 266
           +N+  L+IG++GAV+TL AY+QT +     +G GLFVL FGLLV EG ISL
Sbjct: 34  RNMQSLVIGLVGAVLTLGAYSQTYVDPGKSLGAGLFVLFFGLLVSEGFISL 84


Top