BLASTX nr result
ID: Coptis21_contig00027908
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00027908
(441 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI39452.3| unnamed protein product [Vitis vinifera] 224 7e-57
ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containi... 224 7e-57
emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera] 224 7e-57
ref|XP_002326829.1| predicted protein [Populus trichocarpa] gi|2... 221 5e-56
ref|XP_002511627.1| pentatricopeptide repeat-containing protein,... 218 5e-55
>emb|CBI39452.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 224 bits (570), Expect = 7e-57
Identities = 109/147 (74%), Positives = 126/147 (85%), Gaps = 1/147 (0%)
Frame = -1
Query: 441 EMLSSR-VSPDVYTFNTLIRGFCMNSMVDDGFRFFKEMAQYQCYPDVITYNTLVDGLCRA 265
EML + V+PD YTFN LIRGFCMNSMVD+GF FFKEM++++C PDV+TYNTLVDGLCRA
Sbjct: 225 EMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRA 284
Query: 264 GKVKIAHNVVKGMCRKSSDLNPNVVTYTTLIRGYCEKQCIGEALDVFEEMVRCGMKPNRI 85
GKVKIAHNVVKGM +KS +L+PNVVTYTTLIRGYC KQ + EAL + EMV G+KPN+I
Sbjct: 285 GKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKI 344
Query: 84 TYNTLIQGLCEAQNFVKIKEVLEEMIG 4
TYNTLIQGLCEAQ KIKE+LE M+G
Sbjct: 345 TYNTLIQGLCEAQKLDKIKEILEGMVG 371
Score = 69.3 bits (168), Expect = 3e-10
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 7/152 (4%)
Frame = -1
Query: 441 EMLSSRVSPDVYTFNTLIRGFCMNSMVDDGFRFFKEMAQYQ-------CYPDVITYNTLV 283
+M RV PD T++ L+R C FF E+A+ + C P V YN +
Sbjct: 404 KMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMF 463
Query: 282 DGLCRAGKVKIAHNVVKGMCRKSSDLNPNVVTYTTLIRGYCEKQCIGEALDVFEEMVRCG 103
+ LC GK K A V + + ++ + P+ Y TLI G+C + D+ M+R
Sbjct: 464 EYLCSNGKTKKAERVFRQLMKRGTQDPPS---YKTLILGHCREGTPEAGFDLLVLMLRRD 520
Query: 102 MKPNRITYNTLIQGLCEAQNFVKIKEVLEEMI 7
P+ TY +I GL + + V + LE+M+
Sbjct: 521 FVPDAETYGLMIDGLLKKGDPVLAHKSLEKML 552
Score = 60.8 bits (146), Expect = 1e-07
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Frame = -1
Query: 417 PDVYTFNTLIRGFCMNSMVDDGFRFFKEMAQYQCYPDVITYNTLVDGLCRAGKVKIAHNV 238
PD T NTLI+ C +++ F F++M++ + PD TY+ LV LC+ G + A
Sbjct: 377 PDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEF 436
Query: 237 VKGMCRKSSDLN-----PNVVTYTTLIRGYCEKQCIGEALDVFEEMVRCGMKPNRITYNT 73
+ K L+ P V Y + C +A VF ++++ G + + +Y T
Sbjct: 437 FDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ-DPPSYKT 495
Query: 72 LIQGLC 55
LI G C
Sbjct: 496 LILGHC 501
Score = 57.0 bits (136), Expect = 2e-06
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 4/143 (2%)
Frame = -1
Query: 435 LSSRVSPDVYTFNTLIRGFCMNSMVDDGFRFFKEMAQYQCYPDVITYNTLVDGLCRAGKV 256
L R + D ++ TLI G C + GF M + PD TY ++DGL + G
Sbjct: 482 LMKRGTQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDP 541
Query: 255 KIAHNVVKGMCRKSSDLNPNVVTYTTLIRGYCEKQCIGEALD----VFEEMVRCGMKPNR 88
+AH ++ M KSS L P + +++ EK C E+ + E +R + +
Sbjct: 542 VLAHKSLEKML-KSSHL-PTTAIFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLST 599
Query: 87 ITYNTLIQGLCEAQNFVKIKEVL 19
T L+ LC+++ ++ +++L
Sbjct: 600 HTMEELVSFLCQSRKLLEAQKML 622
>ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Vitis vinifera]
Length = 746
Score = 224 bits (570), Expect = 7e-57
Identities = 109/147 (74%), Positives = 126/147 (85%), Gaps = 1/147 (0%)
Frame = -1
Query: 441 EMLSSR-VSPDVYTFNTLIRGFCMNSMVDDGFRFFKEMAQYQCYPDVITYNTLVDGLCRA 265
EML + V+PD YTFN LIRGFCMNSMVD+GF FFKEM++++C PDV+TYNTLVDGLCRA
Sbjct: 225 EMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRA 284
Query: 264 GKVKIAHNVVKGMCRKSSDLNPNVVTYTTLIRGYCEKQCIGEALDVFEEMVRCGMKPNRI 85
GKVKIAHNVVKGM +KS +L+PNVVTYTTLIRGYC KQ + EAL + EMV G+KPN+I
Sbjct: 285 GKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKI 344
Query: 84 TYNTLIQGLCEAQNFVKIKEVLEEMIG 4
TYNTLIQGLCEAQ KIKE+LE M+G
Sbjct: 345 TYNTLIQGLCEAQKLDKIKEILEGMVG 371
Score = 69.3 bits (168), Expect = 3e-10
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 7/152 (4%)
Frame = -1
Query: 441 EMLSSRVSPDVYTFNTLIRGFCMNSMVDDGFRFFKEMAQYQ-------CYPDVITYNTLV 283
+M RV PD T++ L+R C FF E+A+ + C P V YN +
Sbjct: 404 KMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMF 463
Query: 282 DGLCRAGKVKIAHNVVKGMCRKSSDLNPNVVTYTTLIRGYCEKQCIGEALDVFEEMVRCG 103
+ LC GK K A V + + ++ + P+ Y TLI G+C + D+ M+R
Sbjct: 464 EYLCSNGKTKKAERVFRQLMKRGTQDPPS---YKTLILGHCREGTPEAGFDLLVLMLRRD 520
Query: 102 MKPNRITYNTLIQGLCEAQNFVKIKEVLEEMI 7
P+ TY +I GL + + V + LE+M+
Sbjct: 521 FVPDAETYGLMIDGLLKKGDPVLAHKSLEKML 552
Score = 60.8 bits (146), Expect = 1e-07
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Frame = -1
Query: 417 PDVYTFNTLIRGFCMNSMVDDGFRFFKEMAQYQCYPDVITYNTLVDGLCRAGKVKIAHNV 238
PD T NTLI+ C +++ F F++M++ + PD TY+ LV LC+ G + A
Sbjct: 377 PDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEF 436
Query: 237 VKGMCRKSSDLN-----PNVVTYTTLIRGYCEKQCIGEALDVFEEMVRCGMKPNRITYNT 73
+ K L+ P V Y + C +A VF ++++ G + + +Y T
Sbjct: 437 FDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ-DPPSYKT 495
Query: 72 LIQGLC 55
LI G C
Sbjct: 496 LILGHC 501
>emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
Length = 1024
Score = 224 bits (570), Expect = 7e-57
Identities = 109/147 (74%), Positives = 126/147 (85%), Gaps = 1/147 (0%)
Frame = -1
Query: 441 EMLSSR-VSPDVYTFNTLIRGFCMNSMVDDGFRFFKEMAQYQCYPDVITYNTLVDGLCRA 265
EML + V+PD YTFN LIRGFCMNSMVD+GF FFKEM++++C PDV+TYNTLVDGLCRA
Sbjct: 296 EMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRA 355
Query: 264 GKVKIAHNVVKGMCRKSSDLNPNVVTYTTLIRGYCEKQCIGEALDVFEEMVRCGMKPNRI 85
GKVKIAHNVVKGM +KS +L+PNVVTYTTLIRGYC KQ + EAL + EMV G+KPN+I
Sbjct: 356 GKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKI 415
Query: 84 TYNTLIQGLCEAQNFVKIKEVLEEMIG 4
TYNTLIQGLCEAQ KIKE+LE M+G
Sbjct: 416 TYNTLIQGLCEAQKLDKIKEILEGMVG 442
Score = 69.3 bits (168), Expect = 3e-10
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 7/152 (4%)
Frame = -1
Query: 441 EMLSSRVSPDVYTFNTLIRGFCMNSMVDDGFRFFKEMAQYQ-------CYPDVITYNTLV 283
+M RV PD T++ L+R C FF E+A+ + C P V YN +
Sbjct: 475 KMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMF 534
Query: 282 DGLCRAGKVKIAHNVVKGMCRKSSDLNPNVVTYTTLIRGYCEKQCIGEALDVFEEMVRCG 103
+ LC GK K A V + + ++ + P+ Y TLI G+C + D+ M+R
Sbjct: 535 EYLCSNGKTKKAERVFRQLMKRGTQDPPS---YKTLILGHCREGTPEAGFDLLVLMLRRD 591
Query: 102 MKPNRITYNTLIQGLCEAQNFVKIKEVLEEMI 7
P+ TY +I GL + + V + LE+M+
Sbjct: 592 FVPDAETYGLMIDGLLKKGDPVLAHKSLEKML 623
Score = 60.8 bits (146), Expect = 1e-07
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Frame = -1
Query: 417 PDVYTFNTLIRGFCMNSMVDDGFRFFKEMAQYQCYPDVITYNTLVDGLCRAGKVKIAHNV 238
PD T NTLI+ C +++ F F++M++ + PD TY+ LV LC+ G + A
Sbjct: 448 PDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEF 507
Query: 237 VKGMCRKSSDLN-----PNVVTYTTLIRGYCEKQCIGEALDVFEEMVRCGMKPNRITYNT 73
+ K L+ P V Y + C +A VF ++++ G + + +Y T
Sbjct: 508 FDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ-DPPSYKT 566
Query: 72 LIQGLC 55
LI G C
Sbjct: 567 LILGHC 572
>ref|XP_002326829.1| predicted protein [Populus trichocarpa] gi|222835144|gb|EEE73579.1|
predicted protein [Populus trichocarpa]
Length = 664
Score = 221 bits (563), Expect = 5e-56
Identities = 105/141 (74%), Positives = 120/141 (85%)
Frame = -1
Query: 423 VSPDVYTFNTLIRGFCMNSMVDDGFRFFKEMAQYQCYPDVITYNTLVDGLCRAGKVKIAH 244
V+PD YTFN LIRGFC NSMVD+GFRFFKEM+++ C PDV+TYNTLVDGLCRAGKV+IAH
Sbjct: 164 VTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAH 223
Query: 243 NVVKGMCRKSSDLNPNVVTYTTLIRGYCEKQCIGEALDVFEEMVRCGMKPNRITYNTLIQ 64
NVVKGM +K DL+P+VVTYTTL+RGYC KQ I EAL VFEEMV G+KPN ITYNTLI+
Sbjct: 224 NVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIK 283
Query: 63 GLCEAQNFVKIKEVLEEMIGG 1
GLCE Q F KIKE+L +GG
Sbjct: 284 GLCEVQKFDKIKEILGGAVGG 304
Score = 81.6 bits (200), Expect = 6e-14
Identities = 53/147 (36%), Positives = 73/147 (49%), Gaps = 3/147 (2%)
Frame = -1
Query: 441 EMLSSRVSPDVYTFNTLIRGFCMNSMVDDGFRFFKEMAQ--YQCYPDVITYNTLVDGLCR 268
EM PDV T+NTL+ G C V K M + PDV+TY TLV G C
Sbjct: 193 EMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCM 252
Query: 267 AGKVKIAHNVVKGMCRKSSDLNPNVVTYTTLIRGYCEKQCIGEALDVFEEMV-RCGMKPN 91
++ A V + M S L PN +TY TLI+G CE Q + ++ V G P+
Sbjct: 253 KQEIDEALVVFEEMV--SRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPD 310
Query: 90 RITYNTLIQGLCEAQNFVKIKEVLEEM 10
TYNTL+ C+A NF + ++ ++M
Sbjct: 311 TCTYNTLMNAQCDAGNFDEALKMFKKM 337
Score = 59.7 bits (143), Expect = 2e-07
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 7/152 (4%)
Frame = -1
Query: 441 EMLSSRVSPDVYTFNTLIRGFCMNSMVDDGFRFFKEMAQYQ-------CYPDVITYNTLV 283
+M +V PD T++ LIR C + + F +++ C P V YN +
Sbjct: 336 KMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIF 395
Query: 282 DGLCRAGKVKIAHNVVKGMCRKSSDLNPNVVTYTTLIRGYCEKQCIGEALDVFEEMVRCG 103
D LC+ GK A V + + +K + P +Y TLI G+C++ + M+R
Sbjct: 396 DFLCKNGKTHKAERVFRQLMKKGTQDPP---SYKTLIIGHCKEGTFEAGYKLLLFMLRRD 452
Query: 102 MKPNRITYNTLIQGLCEAQNFVKIKEVLEEMI 7
P+ TY LI G + + + LE M+
Sbjct: 453 YVPDFETYVLLINGFLQKGEPILAYKTLERML 484
Score = 58.5 bits (140), Expect = 5e-07
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 8/153 (5%)
Frame = -1
Query: 441 EMLSSRVSPDVYTFNTLIRGFCMNSMVDDGFRFFKEMAQYQCY-PDVITYNTLVDGLCRA 265
EM+S + P+ T+NTLI+G C D + + PD TYNTL++ C A
Sbjct: 265 EMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDA 324
Query: 264 GKVKIAHNVVKGMCRKSSDLNPNVVTYTTLIRGYCEKQCIGEALDVFEEMV-------RC 106
G A + K M K + P+ TY+ LIR C++ A +F+++
Sbjct: 325 GNFDEALKMFKKM--KELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDD 382
Query: 105 GMKPNRITYNTLIQGLCEAQNFVKIKEVLEEMI 7
G P YN + LC+ K + V +++
Sbjct: 383 GCTPLVAAYNPIFDFLCKNGKTHKAERVFRQLM 415
>ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223548807|gb|EEF50296.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1163
Score = 218 bits (554), Expect = 5e-55
Identities = 105/148 (70%), Positives = 124/148 (83%), Gaps = 1/148 (0%)
Frame = -1
Query: 441 EMLSSR-VSPDVYTFNTLIRGFCMNSMVDDGFRFFKEMAQYQCYPDVITYNTLVDGLCRA 265
EMLS+ V+PD YTFN LIRGFC NSMVD+GFRFFKEM++++C PD++TYNTLVDGLCRA
Sbjct: 216 EMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRA 275
Query: 264 GKVKIAHNVVKGMCRKSSDLNPNVVTYTTLIRGYCEKQCIGEALDVFEEMVRCGMKPNRI 85
GKV IAHNVV GM +KS++LNP+VVTYTTL+RGYC K I EAL VFEEMV G+KPN I
Sbjct: 276 GKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEI 335
Query: 84 TYNTLIQGLCEAQNFVKIKEVLEEMIGG 1
TYNTLI+GLCE Q KIK++ E +GG
Sbjct: 336 TYNTLIKGLCEVQKIDKIKQIFEGALGG 363
Score = 63.5 bits (153), Expect = 2e-08
Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 7/152 (4%)
Frame = -1
Query: 441 EMLSSRVSPDVYTFNTLIRGFCMNSMVDDGFRFFKEMAQYQ-------CYPDVITYNTLV 283
+M+ V PD T++ LIR C + + F E+++ + C P V Y ++
Sbjct: 395 KMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDDGCTPLVAAYKSMF 454
Query: 282 DGLCRAGKVKIAHNVVKGMCRKSSDLNPNVVTYTTLIRGYCEKQCIGEALDVFEEMVRCG 103
+ LCR GK A V + + ++ + + +++ LI+G+C + ++ M+R
Sbjct: 455 EFLCRNGKTAKAERVFRQLMKRGTQ---DPLSFKILIKGHCREGTFEAGYELLVLMLRRD 511
Query: 102 MKPNRITYNTLIQGLCEAQNFVKIKEVLEEMI 7
P+ TY +LI GL + + + LE+MI
Sbjct: 512 FVPDLETYQSLIDGLLQKGEPLVAYQTLEKMI 543
Score = 56.6 bits (135), Expect = 2e-06
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Frame = -1
Query: 417 PDVYTFNTLIRGFCMNSMVDDGFRFFKEMAQYQCYPDVITYNTLVDGLCRAGKVKIAHNV 238
PD T NTL+ C ++D F++M PD TY+ L+ LC+ G + A +
Sbjct: 368 PDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQL 427
Query: 237 V-----KGMCRKSSDLNPNVVTYTTLIRGYCEKQCIGEALDVFEEMVRCGMKPNRITYNT 73
K + + P V Y ++ C +A VF ++++ G + + +++
Sbjct: 428 FDELSEKEILLRDDGCTPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRGTQ-DPLSFKI 486
Query: 72 LIQGLCEAQNFVKIKEVLEEMI 7
LI+G C F E+L M+
Sbjct: 487 LIKGHCREGTFEAGYELLVLML 508