BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027902
         (345 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFD62270.1| rhamnogalacturonate lyase family protein, partial...    95   1e-29
emb|CBI19298.3| unnamed protein product [Vitis vinifera]              100   1e-28
ref|XP_002285626.2| PREDICTED: probable rhamnogalacturonate lyas...   100   1e-28
ref|XP_002308510.1| predicted protein [Populus trichocarpa] gi|2...    97   1e-27
ref|XP_003603709.1| Rhamnogalacturonate lyase [Medicago truncatu...    91   2e-26

>gb|AFD62270.1| rhamnogalacturonate lyase family protein, partial [Annona
           cherimola]
          Length = 256

 Score = 95.1 bits (235), Expect(2) = 1e-29
 Identities = 42/61 (68%), Positives = 52/61 (85%)
 Frame = +1

Query: 163 NDPRADPPLYTTGLIGKDNAIARHGIHGLYWLYKVEIQSNLLMEGINTIYLTQARSSSPF 342
           NDP ADPP +TTG IGKDN+IARHGI GLYWL+ +++ + +L+EG NTI+LTQARS SPF
Sbjct: 172 NDPTADPPHFTTGEIGKDNSIARHGIRGLYWLFDIDVPAGVLVEGDNTIFLTQARSISPF 231

Query: 343 Q 345
           Q
Sbjct: 232 Q 232



 Score = 60.1 bits (144), Expect(2) = 1e-29
 Identities = 31/51 (60%), Positives = 39/51 (76%)
 Frame = +2

Query: 5   YYHHTRKIAGNIFQATTWQILFQLDSLGYDNGSYILRLALASATAADLQVR 157
           Y   TRKI  N +QATTWQI F+LDS+  +N  YILR+A+ASAT ++LQVR
Sbjct: 121 YAQVTRKIGNNTYQATTWQIQFELDSVD-ENWPYILRVAIASATYSELQVR 170


>emb|CBI19298.3| unnamed protein product [Vitis vinifera]
          Length = 656

 Score =  100 bits (249), Expect(2) = 1e-28
 Identities = 44/61 (72%), Positives = 53/61 (86%)
 Frame = +1

Query: 163 NDPRADPPLYTTGLIGKDNAIARHGIHGLYWLYKVEIQSNLLMEGINTIYLTQARSSSPF 342
           NDP+A+PP +T+GLIG+DN IARHGIHGLYWLY V +  NLL+EG NTI+LTQ RS+SPF
Sbjct: 572 NDPKANPPHFTSGLIGRDNTIARHGIHGLYWLYSVNVLGNLLVEGENTIFLTQPRSTSPF 631

Query: 343 Q 345
           Q
Sbjct: 632 Q 632



 Score = 50.8 bits (120), Expect(2) = 1e-28
 Identities = 27/48 (56%), Positives = 35/48 (72%)
 Frame = +2

Query: 17  TRKIAGNIFQATTWQILFQLDSLGYDNGSYILRLALASATAADLQVRV 160
           TRK   N +Q TTWQI F LD++    G+Y LR+A+ASAT ++LQVRV
Sbjct: 525 TRKKDNNTYQGTTWQIKFTLDTVD-QIGTYKLRVAIASATLSELQVRV 571


>ref|XP_002285626.2| PREDICTED: probable rhamnogalacturonate lyase B-like isoform 1
           [Vitis vinifera]
          Length = 643

 Score =  100 bits (249), Expect(2) = 1e-28
 Identities = 44/61 (72%), Positives = 53/61 (86%)
 Frame = +1

Query: 163 NDPRADPPLYTTGLIGKDNAIARHGIHGLYWLYKVEIQSNLLMEGINTIYLTQARSSSPF 342
           NDP+A+PP +T+GLIG+DN IARHGIHGLYWLY V +  NLL+EG NTI+LTQ RS+SPF
Sbjct: 559 NDPKANPPHFTSGLIGRDNTIARHGIHGLYWLYSVNVLGNLLVEGENTIFLTQPRSTSPF 618

Query: 343 Q 345
           Q
Sbjct: 619 Q 619



 Score = 50.8 bits (120), Expect(2) = 1e-28
 Identities = 27/48 (56%), Positives = 35/48 (72%)
 Frame = +2

Query: 17  TRKIAGNIFQATTWQILFQLDSLGYDNGSYILRLALASATAADLQVRV 160
           TRK   N +Q TTWQI F LD++    G+Y LR+A+ASAT ++LQVRV
Sbjct: 512 TRKKDNNTYQGTTWQIKFTLDTVD-QIGTYKLRVAIASATLSELQVRV 558


>ref|XP_002308510.1| predicted protein [Populus trichocarpa] gi|222854486|gb|EEE92033.1|
           predicted protein [Populus trichocarpa]
          Length = 674

 Score = 96.7 bits (239), Expect(2) = 1e-27
 Identities = 42/61 (68%), Positives = 51/61 (83%)
 Frame = +1

Query: 163 NDPRADPPLYTTGLIGKDNAIARHGIHGLYWLYKVEIQSNLLMEGINTIYLTQARSSSPF 342
           N+P +D PL+TTG +GKDNAIARHGIHGLYWLY +++  + L+EG NTIYLTQARS  PF
Sbjct: 599 NNPSSDRPLFTTGAVGKDNAIARHGIHGLYWLYGIDVPGSQLVEGKNTIYLTQARSDGPF 658

Query: 343 Q 345
           Q
Sbjct: 659 Q 659



 Score = 51.2 bits (121), Expect(2) = 1e-27
 Identities = 25/51 (49%), Positives = 36/51 (70%)
 Frame = +2

Query: 5   YYHHTRKIAGNIFQATTWQILFQLDSLGYDNGSYILRLALASATAADLQVR 157
           + H TR      +  TTWQI+F+L+++   N +Y LRLALASATA+++QVR
Sbjct: 548 FAHVTRDAGNKTYDPTTWQIIFELENVNR-NENYTLRLALASATASEIQVR 597


>ref|XP_003603709.1| Rhamnogalacturonate lyase [Medicago truncatula]
           gi|355492757|gb|AES73960.1| Rhamnogalacturonate lyase
           [Medicago truncatula]
          Length = 651

 Score = 90.5 bits (223), Expect(2) = 2e-26
 Identities = 42/62 (67%), Positives = 52/62 (83%), Gaps = 1/62 (1%)
 Frame = +1

Query: 163 NDPRADPPLYTTGLIGKDNAIARHGIHGLYWLYKVEIQSNLLMEG-INTIYLTQARSSSP 339
           NDP+ + PL+++GLIGKDN+IARHGIHGLYWLY V I  +LL+EG  NTI+LTQAR + P
Sbjct: 565 NDPKTNRPLFSSGLIGKDNSIARHGIHGLYWLYNVNIPGSLLVEGDNNTIFLTQARGNIP 624

Query: 340 FQ 345
           FQ
Sbjct: 625 FQ 626



 Score = 53.5 bits (127), Expect(2) = 2e-26
 Identities = 29/48 (60%), Positives = 35/48 (72%)
 Frame = +2

Query: 17  TRKIAGNIFQATTWQILFQLDSLGYDNGSYILRLALASATAADLQVRV 160
           TRK   N +Q TTWQI F LD++    GSY LR+ALASAT ++LQVRV
Sbjct: 518 TRKKEDNTYQGTTWQIKFNLDNVNR-KGSYKLRVALASATYSELQVRV 564