BLASTX nr result
ID: Coptis21_contig00027902
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00027902 (345 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AFD62270.1| rhamnogalacturonate lyase family protein, partial... 95 1e-29 emb|CBI19298.3| unnamed protein product [Vitis vinifera] 100 1e-28 ref|XP_002285626.2| PREDICTED: probable rhamnogalacturonate lyas... 100 1e-28 ref|XP_002308510.1| predicted protein [Populus trichocarpa] gi|2... 97 1e-27 ref|XP_003603709.1| Rhamnogalacturonate lyase [Medicago truncatu... 91 2e-26 >gb|AFD62270.1| rhamnogalacturonate lyase family protein, partial [Annona cherimola] Length = 256 Score = 95.1 bits (235), Expect(2) = 1e-29 Identities = 42/61 (68%), Positives = 52/61 (85%) Frame = +1 Query: 163 NDPRADPPLYTTGLIGKDNAIARHGIHGLYWLYKVEIQSNLLMEGINTIYLTQARSSSPF 342 NDP ADPP +TTG IGKDN+IARHGI GLYWL+ +++ + +L+EG NTI+LTQARS SPF Sbjct: 172 NDPTADPPHFTTGEIGKDNSIARHGIRGLYWLFDIDVPAGVLVEGDNTIFLTQARSISPF 231 Query: 343 Q 345 Q Sbjct: 232 Q 232 Score = 60.1 bits (144), Expect(2) = 1e-29 Identities = 31/51 (60%), Positives = 39/51 (76%) Frame = +2 Query: 5 YYHHTRKIAGNIFQATTWQILFQLDSLGYDNGSYILRLALASATAADLQVR 157 Y TRKI N +QATTWQI F+LDS+ +N YILR+A+ASAT ++LQVR Sbjct: 121 YAQVTRKIGNNTYQATTWQIQFELDSVD-ENWPYILRVAIASATYSELQVR 170 >emb|CBI19298.3| unnamed protein product [Vitis vinifera] Length = 656 Score = 100 bits (249), Expect(2) = 1e-28 Identities = 44/61 (72%), Positives = 53/61 (86%) Frame = +1 Query: 163 NDPRADPPLYTTGLIGKDNAIARHGIHGLYWLYKVEIQSNLLMEGINTIYLTQARSSSPF 342 NDP+A+PP +T+GLIG+DN IARHGIHGLYWLY V + NLL+EG NTI+LTQ RS+SPF Sbjct: 572 NDPKANPPHFTSGLIGRDNTIARHGIHGLYWLYSVNVLGNLLVEGENTIFLTQPRSTSPF 631 Query: 343 Q 345 Q Sbjct: 632 Q 632 Score = 50.8 bits (120), Expect(2) = 1e-28 Identities = 27/48 (56%), Positives = 35/48 (72%) Frame = +2 Query: 17 TRKIAGNIFQATTWQILFQLDSLGYDNGSYILRLALASATAADLQVRV 160 TRK N +Q TTWQI F LD++ G+Y LR+A+ASAT ++LQVRV Sbjct: 525 TRKKDNNTYQGTTWQIKFTLDTVD-QIGTYKLRVAIASATLSELQVRV 571 >ref|XP_002285626.2| PREDICTED: probable rhamnogalacturonate lyase B-like isoform 1 [Vitis vinifera] Length = 643 Score = 100 bits (249), Expect(2) = 1e-28 Identities = 44/61 (72%), Positives = 53/61 (86%) Frame = +1 Query: 163 NDPRADPPLYTTGLIGKDNAIARHGIHGLYWLYKVEIQSNLLMEGINTIYLTQARSSSPF 342 NDP+A+PP +T+GLIG+DN IARHGIHGLYWLY V + NLL+EG NTI+LTQ RS+SPF Sbjct: 559 NDPKANPPHFTSGLIGRDNTIARHGIHGLYWLYSVNVLGNLLVEGENTIFLTQPRSTSPF 618 Query: 343 Q 345 Q Sbjct: 619 Q 619 Score = 50.8 bits (120), Expect(2) = 1e-28 Identities = 27/48 (56%), Positives = 35/48 (72%) Frame = +2 Query: 17 TRKIAGNIFQATTWQILFQLDSLGYDNGSYILRLALASATAADLQVRV 160 TRK N +Q TTWQI F LD++ G+Y LR+A+ASAT ++LQVRV Sbjct: 512 TRKKDNNTYQGTTWQIKFTLDTVD-QIGTYKLRVAIASATLSELQVRV 558 >ref|XP_002308510.1| predicted protein [Populus trichocarpa] gi|222854486|gb|EEE92033.1| predicted protein [Populus trichocarpa] Length = 674 Score = 96.7 bits (239), Expect(2) = 1e-27 Identities = 42/61 (68%), Positives = 51/61 (83%) Frame = +1 Query: 163 NDPRADPPLYTTGLIGKDNAIARHGIHGLYWLYKVEIQSNLLMEGINTIYLTQARSSSPF 342 N+P +D PL+TTG +GKDNAIARHGIHGLYWLY +++ + L+EG NTIYLTQARS PF Sbjct: 599 NNPSSDRPLFTTGAVGKDNAIARHGIHGLYWLYGIDVPGSQLVEGKNTIYLTQARSDGPF 658 Query: 343 Q 345 Q Sbjct: 659 Q 659 Score = 51.2 bits (121), Expect(2) = 1e-27 Identities = 25/51 (49%), Positives = 36/51 (70%) Frame = +2 Query: 5 YYHHTRKIAGNIFQATTWQILFQLDSLGYDNGSYILRLALASATAADLQVR 157 + H TR + TTWQI+F+L+++ N +Y LRLALASATA+++QVR Sbjct: 548 FAHVTRDAGNKTYDPTTWQIIFELENVNR-NENYTLRLALASATASEIQVR 597 >ref|XP_003603709.1| Rhamnogalacturonate lyase [Medicago truncatula] gi|355492757|gb|AES73960.1| Rhamnogalacturonate lyase [Medicago truncatula] Length = 651 Score = 90.5 bits (223), Expect(2) = 2e-26 Identities = 42/62 (67%), Positives = 52/62 (83%), Gaps = 1/62 (1%) Frame = +1 Query: 163 NDPRADPPLYTTGLIGKDNAIARHGIHGLYWLYKVEIQSNLLMEG-INTIYLTQARSSSP 339 NDP+ + PL+++GLIGKDN+IARHGIHGLYWLY V I +LL+EG NTI+LTQAR + P Sbjct: 565 NDPKTNRPLFSSGLIGKDNSIARHGIHGLYWLYNVNIPGSLLVEGDNNTIFLTQARGNIP 624 Query: 340 FQ 345 FQ Sbjct: 625 FQ 626 Score = 53.5 bits (127), Expect(2) = 2e-26 Identities = 29/48 (60%), Positives = 35/48 (72%) Frame = +2 Query: 17 TRKIAGNIFQATTWQILFQLDSLGYDNGSYILRLALASATAADLQVRV 160 TRK N +Q TTWQI F LD++ GSY LR+ALASAT ++LQVRV Sbjct: 518 TRKKEDNTYQGTTWQIKFNLDNVNR-KGSYKLRVALASATYSELQVRV 564