BLASTX nr result
ID: Coptis21_contig00027857
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00027857 (451 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002836081.1| RNA polymerase beta' subunit [Megaleranthis ... 222 3e-56 gb|ADD31167.1| RNA polymerase beta' subunit protein [Meliosma af... 219 2e-55 ref|YP_004564094.1| RNA polymerase beta [Nelumbo nucifera] gi|22... 218 4e-55 ref|YP_004563858.1| RNA polymerase beta [Nelumbo lutea] gi|22447... 218 4e-55 gb|ADD31168.1| RNA polymerase beta' subunit protein [Nelumbo nuc... 218 4e-55 >ref|YP_002836081.1| RNA polymerase beta' subunit [Megaleranthis saniculifolia] gi|226933873|gb|ACO92006.1| RNA polymerase beta' subunit [Megaleranthis saniculifolia] Length = 680 Score = 222 bits (565), Expect = 3e-56 Identities = 115/150 (76%), Positives = 118/150 (78%) Frame = +2 Query: 2 ADLDLRLITDSSLLEWKELGEEGPTGNEWEDRKIGRRKDFLVRCMKLVKHFIRTNVEPER 181 AD DLRLITDSSLLEWKELGEEGPTGNEWEDRKIGRRKDFLVR M+L KHFIRTNVEPER Sbjct: 204 ADPDLRLITDSSLLEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEPER 263 Query: 182 MVXXXXXXXXXXXXXIIQIDKGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMC 361 MV IIQID GKLMSSDINELYRRVIY PGELVMC Sbjct: 264 MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMC 323 Query: 362 REKLVQEAVDTLLDNGIRGQPMRDGNNKVY 451 +EKLVQEAVDTLLDNGIRGQPMRDG+NKVY Sbjct: 324 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVY 353 >gb|ADD31167.1| RNA polymerase beta' subunit protein [Meliosma aff. cuneifolia Moore 333] Length = 703 Score = 219 bits (558), Expect = 2e-55 Identities = 113/150 (75%), Positives = 117/150 (78%) Frame = +2 Query: 2 ADLDLRLITDSSLLEWKELGEEGPTGNEWEDRKIGRRKDFLVRCMKLVKHFIRTNVEPER 181 ADLDLR+ITD SL+EWKELGEEGPTGNEWEDRKIGRRKDFLVR M+L KHFIRTNVEPER Sbjct: 204 ADLDLRIITDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEPER 263 Query: 182 MVXXXXXXXXXXXXXIIQIDKGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMC 361 MV IIQID GKLMSSDINELYRRVIY PGELVMC Sbjct: 264 MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMC 323 Query: 362 REKLVQEAVDTLLDNGIRGQPMRDGNNKVY 451 +EKLVQEAVDTLLDNGIRGQPMRDG NKVY Sbjct: 324 QEKLVQEAVDTLLDNGIRGQPMRDGYNKVY 353 >ref|YP_004564094.1| RNA polymerase beta [Nelumbo nucifera] gi|224474213|gb|ACN49399.1| RNA polymerase beta [Nelumbo nucifera] gi|383286788|gb|AFH01438.1| RNA polymerase beta (chloroplast) [Nelumbo nucifera] Length = 682 Score = 218 bits (555), Expect = 4e-55 Identities = 112/150 (74%), Positives = 117/150 (78%) Frame = +2 Query: 2 ADLDLRLITDSSLLEWKELGEEGPTGNEWEDRKIGRRKDFLVRCMKLVKHFIRTNVEPER 181 ADLDLR+I DSSL+EWKELGEEGPTGNEWEDRKIGRRKDFLVR M+L KHFIRTNVEPER Sbjct: 204 ADLDLRIIIDSSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEPER 263 Query: 182 MVXXXXXXXXXXXXXIIQIDKGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMC 361 MV IIQID GKLMSSDINELYRRVIY PGE VMC Sbjct: 264 MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGESVMC 323 Query: 362 REKLVQEAVDTLLDNGIRGQPMRDGNNKVY 451 +EKLVQEAVDTLLDNGIRGQPMRDG+NKVY Sbjct: 324 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVY 353 >ref|YP_004563858.1| RNA polymerase beta [Nelumbo lutea] gi|224474125|gb|ACN49314.1| RNA polymerase beta [Nelumbo lutea] gi|383286883|gb|AFH01532.1| RNA polymerase beta (chloroplast) [Nelumbo lutea] Length = 682 Score = 218 bits (555), Expect = 4e-55 Identities = 112/150 (74%), Positives = 117/150 (78%) Frame = +2 Query: 2 ADLDLRLITDSSLLEWKELGEEGPTGNEWEDRKIGRRKDFLVRCMKLVKHFIRTNVEPER 181 ADLDLR+I DSSL+EWKELGEEGPTGNEWEDRKIGRRKDFLVR M+L KHFIRTNVEPER Sbjct: 204 ADLDLRIIIDSSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEPER 263 Query: 182 MVXXXXXXXXXXXXXIIQIDKGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMC 361 MV IIQID GKLMSSDINELYRRVIY PGE VMC Sbjct: 264 MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGESVMC 323 Query: 362 REKLVQEAVDTLLDNGIRGQPMRDGNNKVY 451 +EKLVQEAVDTLLDNGIRGQPMRDG+NKVY Sbjct: 324 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVY 353 >gb|ADD31168.1| RNA polymerase beta' subunit protein [Nelumbo nucifera] Length = 689 Score = 218 bits (555), Expect = 4e-55 Identities = 112/150 (74%), Positives = 117/150 (78%) Frame = +2 Query: 2 ADLDLRLITDSSLLEWKELGEEGPTGNEWEDRKIGRRKDFLVRCMKLVKHFIRTNVEPER 181 ADLDLR+I DSSL+EWKELGEEGPTGNEWEDRKIGRRKDFLVR M+L KHFIRTNVEPER Sbjct: 211 ADLDLRIIIDSSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEPER 270 Query: 182 MVXXXXXXXXXXXXXIIQIDKGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMC 361 MV IIQID GKLMSSDINELYRRVIY PGE VMC Sbjct: 271 MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGESVMC 330 Query: 362 REKLVQEAVDTLLDNGIRGQPMRDGNNKVY 451 +EKLVQEAVDTLLDNGIRGQPMRDG+NKVY Sbjct: 331 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVY 360