BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027857
         (451 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002836081.1| RNA polymerase beta' subunit [Megaleranthis ...   222   3e-56
gb|ADD31167.1| RNA polymerase beta' subunit protein [Meliosma af...   219   2e-55
ref|YP_004564094.1| RNA polymerase beta [Nelumbo nucifera] gi|22...   218   4e-55
ref|YP_004563858.1| RNA polymerase beta [Nelumbo lutea] gi|22447...   218   4e-55
gb|ADD31168.1| RNA polymerase beta' subunit protein [Nelumbo nuc...   218   4e-55

>ref|YP_002836081.1| RNA polymerase beta' subunit [Megaleranthis saniculifolia]
           gi|226933873|gb|ACO92006.1| RNA polymerase beta' subunit
           [Megaleranthis saniculifolia]
          Length = 680

 Score =  222 bits (565), Expect = 3e-56
 Identities = 115/150 (76%), Positives = 118/150 (78%)
 Frame = +2

Query: 2   ADLDLRLITDSSLLEWKELGEEGPTGNEWEDRKIGRRKDFLVRCMKLVKHFIRTNVEPER 181
           AD DLRLITDSSLLEWKELGEEGPTGNEWEDRKIGRRKDFLVR M+L KHFIRTNVEPER
Sbjct: 204 ADPDLRLITDSSLLEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEPER 263

Query: 182 MVXXXXXXXXXXXXXIIQIDKGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMC 361
           MV             IIQID GKLMSSDINELYRRVIY               PGELVMC
Sbjct: 264 MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMC 323

Query: 362 REKLVQEAVDTLLDNGIRGQPMRDGNNKVY 451
           +EKLVQEAVDTLLDNGIRGQPMRDG+NKVY
Sbjct: 324 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVY 353


>gb|ADD31167.1| RNA polymerase beta' subunit protein [Meliosma aff. cuneifolia
           Moore 333]
          Length = 703

 Score =  219 bits (558), Expect = 2e-55
 Identities = 113/150 (75%), Positives = 117/150 (78%)
 Frame = +2

Query: 2   ADLDLRLITDSSLLEWKELGEEGPTGNEWEDRKIGRRKDFLVRCMKLVKHFIRTNVEPER 181
           ADLDLR+ITD SL+EWKELGEEGPTGNEWEDRKIGRRKDFLVR M+L KHFIRTNVEPER
Sbjct: 204 ADLDLRIITDYSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEPER 263

Query: 182 MVXXXXXXXXXXXXXIIQIDKGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMC 361
           MV             IIQID GKLMSSDINELYRRVIY               PGELVMC
Sbjct: 264 MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMC 323

Query: 362 REKLVQEAVDTLLDNGIRGQPMRDGNNKVY 451
           +EKLVQEAVDTLLDNGIRGQPMRDG NKVY
Sbjct: 324 QEKLVQEAVDTLLDNGIRGQPMRDGYNKVY 353


>ref|YP_004564094.1| RNA polymerase beta [Nelumbo nucifera] gi|224474213|gb|ACN49399.1|
           RNA polymerase beta [Nelumbo nucifera]
           gi|383286788|gb|AFH01438.1| RNA polymerase beta
           (chloroplast) [Nelumbo nucifera]
          Length = 682

 Score =  218 bits (555), Expect = 4e-55
 Identities = 112/150 (74%), Positives = 117/150 (78%)
 Frame = +2

Query: 2   ADLDLRLITDSSLLEWKELGEEGPTGNEWEDRKIGRRKDFLVRCMKLVKHFIRTNVEPER 181
           ADLDLR+I DSSL+EWKELGEEGPTGNEWEDRKIGRRKDFLVR M+L KHFIRTNVEPER
Sbjct: 204 ADLDLRIIIDSSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEPER 263

Query: 182 MVXXXXXXXXXXXXXIIQIDKGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMC 361
           MV             IIQID GKLMSSDINELYRRVIY               PGE VMC
Sbjct: 264 MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGESVMC 323

Query: 362 REKLVQEAVDTLLDNGIRGQPMRDGNNKVY 451
           +EKLVQEAVDTLLDNGIRGQPMRDG+NKVY
Sbjct: 324 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVY 353


>ref|YP_004563858.1| RNA polymerase beta [Nelumbo lutea] gi|224474125|gb|ACN49314.1| RNA
           polymerase beta [Nelumbo lutea]
           gi|383286883|gb|AFH01532.1| RNA polymerase beta
           (chloroplast) [Nelumbo lutea]
          Length = 682

 Score =  218 bits (555), Expect = 4e-55
 Identities = 112/150 (74%), Positives = 117/150 (78%)
 Frame = +2

Query: 2   ADLDLRLITDSSLLEWKELGEEGPTGNEWEDRKIGRRKDFLVRCMKLVKHFIRTNVEPER 181
           ADLDLR+I DSSL+EWKELGEEGPTGNEWEDRKIGRRKDFLVR M+L KHFIRTNVEPER
Sbjct: 204 ADLDLRIIIDSSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEPER 263

Query: 182 MVXXXXXXXXXXXXXIIQIDKGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMC 361
           MV             IIQID GKLMSSDINELYRRVIY               PGE VMC
Sbjct: 264 MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGESVMC 323

Query: 362 REKLVQEAVDTLLDNGIRGQPMRDGNNKVY 451
           +EKLVQEAVDTLLDNGIRGQPMRDG+NKVY
Sbjct: 324 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVY 353


>gb|ADD31168.1| RNA polymerase beta' subunit protein [Nelumbo nucifera]
          Length = 689

 Score =  218 bits (555), Expect = 4e-55
 Identities = 112/150 (74%), Positives = 117/150 (78%)
 Frame = +2

Query: 2   ADLDLRLITDSSLLEWKELGEEGPTGNEWEDRKIGRRKDFLVRCMKLVKHFIRTNVEPER 181
           ADLDLR+I DSSL+EWKELGEEGPTGNEWEDRKIGRRKDFLVR M+L KHFIRTNVEPER
Sbjct: 211 ADLDLRIIIDSSLVEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNVEPER 270

Query: 182 MVXXXXXXXXXXXXXIIQIDKGKLMSSDINELYRRVIYXXXXXXXXXXXXXXXPGELVMC 361
           MV             IIQID GKLMSSDINELYRRVIY               PGE VMC
Sbjct: 271 MVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGESVMC 330

Query: 362 REKLVQEAVDTLLDNGIRGQPMRDGNNKVY 451
           +EKLVQEAVDTLLDNGIRGQPMRDG+NKVY
Sbjct: 331 QEKLVQEAVDTLLDNGIRGQPMRDGHNKVY 360