BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027782
         (1726 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containi...   504   e-140
emb|CBI26570.3| unnamed protein product [Vitis vinifera]              497   e-138
emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]   492   e-136
ref|XP_003610900.1| Pentatricopeptide repeat-containing protein ...   459   e-126
ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group] g...   456   e-125

>ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
            chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score =  504 bits (1298), Expect = e-140
 Identities = 247/316 (78%), Positives = 271/316 (85%)
 Frame = +3

Query: 3    LPYSSVIDAYLKNGDHKLAKEKLLEVKRDGLEPDHRIWTCFIRXXXXXXXXXXXXXXXXX 182
            LPYSSVIDAYLKNGDH +A +KL+E+K+DGLEPDHRIWTCF+R                 
Sbjct: 1098 LPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKA 1157

Query: 183  XRDTGFDLPIRLLTERSESLVVEMDRLLMELGPLADNAAFNFVNAIEDMLWAFELRATAS 362
             RDTGFDLPIRLLTE+S+SLV E+D  L +LGPL DNAAFNFVNA+ED+LWAFELRATAS
Sbjct: 1158 LRDTGFDLPIRLLTEKSDSLVSEVDNCLEKLGPLEDNAAFNFVNALEDLLWAFELRATAS 1217

Query: 363  WVFQLAIKRKVYRHDVFRVADKDWGADFRKLSPGAALVALTLWLDHMQDASLQGSPESPK 542
            WVFQLA+KR +YRHDVFRVA+KDWGADFRK+S G+ALV LTLWLDHMQDASLQG P SPK
Sbjct: 1218 WVFQLAVKRSIYRHDVFRVAEKDWGADFRKMSAGSALVGLTLWLDHMQDASLQGYPLSPK 1277

Query: 543  SIVLITGTAEYNMVSLDKTLKAYLWEMGSPFLPCKTRSGLLVAKGHSLRMWLKDSPFCFD 722
            S+VLITGTAEYNMVSL+ TLKA+LWEMGSPFLPCKTRSGLLVAK HSLRMWLKDS FC D
Sbjct: 1278 SVVLITGTAEYNMVSLNSTLKAFLWEMGSPFLPCKTRSGLLVAKAHSLRMWLKDSSFCLD 1337

Query: 723  LELKDGPSLPELNSMQLSEGYFMRTGLIPIFKDIHERLGHVRPKKFARLALLTDEKRDKV 902
            LELKD PSLPE NSMQL EG F+R GL+P FKDI ERLG VRPKKFARLALL DEKRDKV
Sbjct: 1338 LELKDAPSLPESNSMQLMEGCFLRRGLVPAFKDITERLGDVRPKKFARLALLPDEKRDKV 1397

Query: 903  IQADLEGRKEKLAKMK 950
            I+AD+EG KEKL KMK
Sbjct: 1398 IRADIEGGKEKLEKMK 1413


>emb|CBI26570.3| unnamed protein product [Vitis vinifera]
          Length = 1042

 Score =  497 bits (1279), Expect = e-138
 Identities = 247/324 (76%), Positives = 271/324 (83%), Gaps = 8/324 (2%)
 Frame = +3

Query: 3    LPYSSVIDAYLKNGDHKLAKEKLLEVKRDGLEPDHRIWTCFIRXXXXXXXXXXXXXXXXX 182
            LPYSSVIDAYLKNGDH +A +KL+E+K+DGLEPDHRIWTCF+R                 
Sbjct: 680  LPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKA 739

Query: 183  XRDTGFDLPIRLLTERSESLVVEMDRLLMELGPLADNAAFNFVNAIEDMLWAFELRATAS 362
             RDTGFDLPIRLLTE+S+SLV E+D  L +LGPL DNAAFNFVNA+ED+LWAFELRATAS
Sbjct: 740  LRDTGFDLPIRLLTEKSDSLVSEVDNCLEKLGPLEDNAAFNFVNALEDLLWAFELRATAS 799

Query: 363  WVFQLAIKRKVYRHDVFRVADKDWGADFRKLSPGAALVALTLWLDHMQ--------DASL 518
            WVFQLA+KR +YRHDVFRVA+KDWGADFRK+S G+ALV LTLWLDHMQ        DASL
Sbjct: 800  WVFQLAVKRSIYRHDVFRVAEKDWGADFRKMSAGSALVGLTLWLDHMQAKYFYFWQDASL 859

Query: 519  QGSPESPKSIVLITGTAEYNMVSLDKTLKAYLWEMGSPFLPCKTRSGLLVAKGHSLRMWL 698
            QG P SPKS+VLITGTAEYNMVSL+ TLKA+LWEMGSPFLPCKTRSGLLVAK HSLRMWL
Sbjct: 860  QGYPLSPKSVVLITGTAEYNMVSLNSTLKAFLWEMGSPFLPCKTRSGLLVAKAHSLRMWL 919

Query: 699  KDSPFCFDLELKDGPSLPELNSMQLSEGYFMRTGLIPIFKDIHERLGHVRPKKFARLALL 878
            KDS FC DLELKD PSLPE NSMQL EG F+R GL+P FKDI ERLG VRPKKFARLALL
Sbjct: 920  KDSSFCLDLELKDAPSLPESNSMQLMEGCFLRRGLVPAFKDITERLGDVRPKKFARLALL 979

Query: 879  TDEKRDKVIQADLEGRKEKLAKMK 950
             DEKRDKVI+AD+EG KEKL KMK
Sbjct: 980  PDEKRDKVIRADIEGGKEKLEKMK 1003


>emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score =  492 bits (1267), Expect = e-136
 Identities = 247/336 (73%), Positives = 271/336 (80%), Gaps = 20/336 (5%)
 Frame = +3

Query: 3    LPYSSVIDAYLKNGDHKLAKEKLLEVKRDGLEPDHRIWTCFIRXXXXXXXXXXXXXXXXX 182
            LPYSSVIDAYLKNGDH +A +KL+E+K+DGLEPDHRIWTCF+R                 
Sbjct: 1130 LPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKA 1189

Query: 183  XRDTGFDLPIRLLTERSESLVVEMDRLLMELGPLADNAAFNFVNAIEDMLWAFELRATAS 362
             RDTGFDLPIRLLTE+S+SLV E+D  L +LGPL DNAAFNFVNA+ED+LWAFELRATAS
Sbjct: 1190 LRDTGFDLPIRLLTEKSDSLVSEVDNCLEKLGPLEDNAAFNFVNALEDLLWAFELRATAS 1249

Query: 363  WVFQLAIKRKVYRHDVFRVADKDWGADFRKLSPGAALVALTLWLDHMQ------------ 506
            WVFQLA+KR +YRHDVFRVA+KDWGADFRK+S G+ALV LTLWLDHMQ            
Sbjct: 1250 WVFQLAVKRSIYRHDVFRVAEKDWGADFRKMSAGSALVGLTLWLDHMQASFLITIFVQLM 1309

Query: 507  --------DASLQGSPESPKSIVLITGTAEYNMVSLDKTLKAYLWEMGSPFLPCKTRSGL 662
                    DASLQG P SPKS+VLITGTAEYNMVSL+ TLKA+LWEMGSPFLPCKTRSGL
Sbjct: 1310 EEYFYFWQDASLQGYPLSPKSVVLITGTAEYNMVSLNSTLKAFLWEMGSPFLPCKTRSGL 1369

Query: 663  LVAKGHSLRMWLKDSPFCFDLELKDGPSLPELNSMQLSEGYFMRTGLIPIFKDIHERLGH 842
            LVAK HSLRMWLKDS FC DLELKD PSLPE NSMQL EG F+R GL+P FKDI ERLG 
Sbjct: 1370 LVAKAHSLRMWLKDSSFCLDLELKDAPSLPESNSMQLMEGCFLRRGLVPAFKDITERLGD 1429

Query: 843  VRPKKFARLALLTDEKRDKVIQADLEGRKEKLAKMK 950
            VRPKKFARLALL DEKRDKVI+AD+EG KEKL KMK
Sbjct: 1430 VRPKKFARLALLPDEKRDKVIRADIEGGKEKLEKMK 1465


>ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355512235|gb|AES93858.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 1508

 Score =  459 bits (1180), Expect = e-126
 Identities = 232/336 (69%), Positives = 264/336 (78%), Gaps = 1/336 (0%)
 Frame = +3

Query: 3    LPYSSVIDAYLKNGDHKLAKEKLLEVKRDGLEPDHRIWTCFIRXXXXXXXXXXXXXXXXX 182
            LPYSSVIDAYLK GD K   EKL E+K   +EPDHRIWTCFIR                 
Sbjct: 1140 LPYSSVIDAYLKKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAASLSGEVNDANNLLNA 1199

Query: 183  XRDTGFDLPIRLLTERSESLVVEMDRLLMELGPLADNAAFNFVNAIEDMLWAFELRATAS 362
             +  GFDLPIRLL E+SESLV E+D+ L  L  + DNAAFNFVNA+ D+LWAFELRATAS
Sbjct: 1200 LQAVGFDLPIRLLGEKSESLVSEVDQCLGRLEHVEDNAAFNFVNALVDLLWAFELRATAS 1259

Query: 363  WVFQLAIKRKVYRHDVFRVADKDWGADFRKLSPGAALVALTLWLDHMQDASLQGSPESPK 542
            WVFQLAIKR +YRHD+FRVA KDWGADFRKLS G+ALV LTLWLDHMQDASLQG PESPK
Sbjct: 1260 WVFQLAIKRSIYRHDIFRVAQKDWGADFRKLSAGSALVGLTLWLDHMQDASLQGYPESPK 1319

Query: 543  SIVLITGTAEYNMVSLDKTLKAYLWEMGSPFLPCKTRSGLLVAKGHSLRMWLKDSPFCFD 722
            S+VLITGTAEYNMVSLD TLKA+LWEMGSPFLPCKTR G+LVAK HSLRMWLKDS FC D
Sbjct: 1320 SVVLITGTAEYNMVSLDSTLKAFLWEMGSPFLPCKTRHGVLVAKAHSLRMWLKDSSFCLD 1379

Query: 723  LELKDGPSLPELNSMQLSEGYFMRTGLIPIFKDIHERLGHVRPKKFARLALLTDEKRDKV 902
            LELKD P+LP+LNSMQL  G F+R GL+P F +I E+L  V PKKF+RLALL D+KR KV
Sbjct: 1380 LELKDSPNLPKLNSMQLINGCFIRRGLVPAFNEITEKLKVVSPKKFSRLALLPDDKRSKV 1439

Query: 903  IQADLEGRKEKLAKMKTTS-ALAKPGKKTKFGRYIR 1007
            +QAD++GRKEKL K+K +   L +  KK +  ++IR
Sbjct: 1440 MQADVDGRKEKLEKLKKSDPRLLRKIKKIRKKKFIR 1475


>ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
            gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza
            sativa Japonica Group] gi|113595105|dbj|BAF18979.1|
            Os06g0199100 [Oryza sativa Japonica Group]
          Length = 1283

 Score =  456 bits (1172), Expect = e-125
 Identities = 221/338 (65%), Positives = 272/338 (80%), Gaps = 2/338 (0%)
 Frame = +3

Query: 3    LPYSSVIDAYLKNGDHKLAKEKLLEVKRDGLEPDHRIWTCFIRXXXXXXXXXXXXXXXXX 182
            LPYS+V+DAYL+N D+ L   KLLE+KRDG+EPDH++WT FIR                 
Sbjct: 938  LPYSTVLDAYLRNRDYSLGITKLLEMKRDGVEPDHQVWTSFIRAASLCEQTDDAILLLKS 997

Query: 183  XRDTGFDLPIRLLTERSESLVVEMDRLLMELGPLADNAAFNFVNAIEDMLWAFELRATAS 362
             +D GFDLPIRLLTER+ SL  E+D  L +LG L D+A+ NFVNA+ED+LWAFE RATAS
Sbjct: 998  LQDCGFDLPIRLLTERTSSLFTEVDSFLEKLGTLEDSASLNFVNALEDLLWAFERRATAS 1057

Query: 363  WVFQLAIKRKVYRHDVFRVADKDWGADFRKLSPGAALVALTLWLDHMQDASLQGSPESPK 542
            W+FQLA+KR +Y H++FRV +KDWGAD RKLS GAALVALTLWLD MQDASLQG+PESPK
Sbjct: 1058 WIFQLAVKRSIYHHNIFRVEEKDWGADLRKLSAGAALVALTLWLDQMQDASLQGAPESPK 1117

Query: 543  SIVLITGTAEYNMVSLDKTLKAYLWEMGSPFLPCKTRSGLLVAKGHSLRMWLKDSPFCFD 722
            SIVL+TG  EYNMVSL KT++AYL EMGSPFLPC++RSG  V K +SL+MWLKDSPFC D
Sbjct: 1118 SIVLVTGEGEYNMVSLRKTIRAYLLEMGSPFLPCRSRSGRFVVKAYSLKMWLKDSPFCLD 1177

Query: 723  LELKDGPSLPELNSMQLSEGYFMRTGLIPIFKDIHERLGHVRPKKFARLALLTDEKRDKV 902
            LELKD P+LP+ NSM+L+EGYFMR GL+P+FKDIHERLG V PKKF+RLALL++E RD+V
Sbjct: 1178 LELKDAPALPKTNSMKLTEGYFMRAGLVPVFKDIHERLGEVWPKKFSRLALLSEESRDEV 1237

Query: 903  IQADLEGRKEKLAKMKTTS-ALAKPGKK-TKFGRYIRR 1010
            I+AD++GRKEKL KMK    A+AK  K+  + G+++++
Sbjct: 1238 IKADIKGRKEKLEKMKKQGLAIAKRSKRGPRRGKFVKQ 1275