BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027744
         (1276 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ...   102   3e-19
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2...   101   4e-19
ref|XP_002278342.1| PREDICTED: F-box protein SKIP23 [Vitis vinif...   101   5e-19
ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protei...   100   1e-18
ref|XP_002278304.1| PREDICTED: F-box protein SKIP23-like [Vitis ...    97   9e-18

>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 398

 Score =  102 bits (253), Expect = 3e-19
 Identities = 72/231 (31%), Positives = 114/231 (49%), Gaps = 19/231 (8%)
 Frame = -1

Query: 835 KKAVLSSCPTSLIDNEECLVMSIFCDGSLWFHHMGNTDWAHVVHPEYSKRY-EDIVYFKG 659
           +K VLSS P  L DN   ++  +     L +   G+  W+ V   E ++ + ED+++  G
Sbjct: 166 RKVVLSSSP--LKDNNFVVIAILNQTDDLAYCRNGDKSWSLV---ENARSFCEDVIFVNG 220

Query: 658 KFYAVDNDGRVLDCDVSGPSPVITEIRTKGNSYSTCDYSLVESAGELLLVRKISNVD--- 488
            FYAV+  G+++ CD+S  SP ++ + T   +     Y LV S  ELLLV +  +++   
Sbjct: 221 MFYAVNKAGQIVICDISSDSPRVSFMETPRQAGGDMQY-LVNSGDELLLVTRYLDLEYEF 279

Query: 487 ---------------FKVLQLDPISKTWTEIRTLQNHAIFLDYKNSTSLLASDDSGFKGN 353
                          F+V +LD     W  + TL + A+F+   +S SL A+D SG  GN
Sbjct: 280 DHPDMEPHLIYRTIRFEVFRLDWNGPQWLRMSTLGDKALFIGENSSLSLSATDFSGCMGN 339

Query: 352 CIYFNYNNFKSEDSRNSQPHDVGIFNLEDESVEKFRGYSCDSRSITQPQIW 200
           CIY+  +   +    +   HD+GIF L DE++E      C  R+ T P  W
Sbjct: 340 CIYYTDDYLDANYDGHFGDHDLGIFKLCDETIEPL---PCYPRNFTSPLQW 387


>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
           predicted protein [Populus trichocarpa]
          Length = 393

 Score =  101 bits (252), Expect = 4e-19
 Identities = 76/233 (32%), Positives = 116/233 (49%), Gaps = 16/233 (6%)
 Frame = -1

Query: 835 KKAVLSSCPTSLIDNEECLVMSIFCD-GSLWFHHMGNTDWAHVVHPEYSKRY-EDIVYFK 662
           KK V+SS P      +  + M+I C  G L +   G+  W  V   E S+ + ED++YF 
Sbjct: 165 KKVVMSSSPLEK-KGDFFVAMAILCSTGDLAYCKNGDECWNIV---ENSRSFSEDVIYFN 220

Query: 661 GKFYAVDNDGRVLDCDVSGPSPVITEIRTKGNSYSTCDYSLVESAGELLLVRKISNVD-- 488
           G FYAV+  G+++ CDV+G SP ++ I T         Y LV S   LLLV +  ++D  
Sbjct: 221 GLFYAVNKAGQIVVCDVNGNSPKVSFIETPRQIGGDMQY-LVSSGDGLLLVTRYLDLDVE 279

Query: 487 ----------FKVLQLDPISKTWTEIRTLQNHAIFLDYKNSTSLLASDDSGFKGNCIYFN 338
                     F+V +LD     W  + +L +  +F+   +S +L AS  SG  G+CIY+ 
Sbjct: 280 FDIFIYKTARFEVFKLDLNGPRWERVTSLGDMMLFIGENSSLALSASGLSGCMGDCIYYT 339

Query: 337 YNNFKSEDSRNSQPHDVGIFNLEDESVEKFRGYSCDSRSITQ--PQIWVTIFP 185
            +   +    +   HD+GIF L D S+E    Y  +S S  Q  P +W++  P
Sbjct: 340 DDYSANNYDGHIGEHDLGIFKLSDGSIEPLPCYPRNSYSRLQWPPPLWISPNP 392


>ref|XP_002278342.1| PREDICTED: F-box protein SKIP23 [Vitis vinifera]
          Length = 375

 Score =  101 bits (251), Expect = 5e-19
 Identities = 74/234 (31%), Positives = 113/234 (48%), Gaps = 13/234 (5%)
 Frame = -1

Query: 853 DSRKVHKKAVLSSCPTSLIDNEECLVMSIFCDGSLWFHHMGNTDWAHVVHPEYSKRYEDI 674
           D   +HK  V  S   S  + E+ ++++I   G L     GN     +   +     +D+
Sbjct: 148 DEGSLHKGKVAFS---STSNGEDFVMLTIHVSGKLAMFRHGNKRLKTI---DDMPSCDDL 201

Query: 673 VYFKGKFYAVDNDGRVLDCDVSGPSPVITEIRTK---GNSYSTCDYSLVESAGELLLVRK 503
           ++F G+FYAVDN GR +   +  P PV++ I      GN  S     LVES GELL+V  
Sbjct: 202 IFFNGEFYAVDNTGRTVVVAIGSP-PVLSLIADSVIGGNKKS-----LVESNGELLMVNT 255

Query: 502 ISN----------VDFKVLQLDPISKTWTEIRTLQNHAIFLDYKNSTSLLASDDSGFKGN 353
             +          V FKV +L+ I   W E+  L +  +FL  K++ S +AS+  G +GN
Sbjct: 256 YFDQGIHGIMNRAVRFKVFKLNQIGHMWVEVENLGDRILFLGEKSTFSAVASEFCGCEGN 315

Query: 352 CIYFNYNNFKSEDSRNSQPHDVGIFNLEDESVEKFRGYSCDSRSITQPQIWVTI 191
           CIY+  + F   D  +     +GIFNLE+ ++     +   S+ I  P  WV I
Sbjct: 316 CIYYTNSFFFPNDQEDDAYTGIGIFNLENGNLGPLSSFPNYSKVIWSPPAWVYI 369


>ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Vitis
           vinifera]
          Length = 387

 Score =  100 bits (248), Expect = 1e-18
 Identities = 70/220 (31%), Positives = 108/220 (49%), Gaps = 19/220 (8%)
 Frame = -1

Query: 796 DNEECLVMSIFCDGSLWFHHMGNTDWAHVVHPEYSKRYEDIVYFKGKFYAVDNDGRVLDC 617
           + ++  +++I   G L     G+  W  ++  +    Y+D+++F GKFYAVDN GR +  
Sbjct: 166 NGDDFWLLTIHLSGKLAMFRSGDKKW--MIIDDMQSPYDDVIFFDGKFYAVDNTGRTVVV 223

Query: 616 DVS-GPSPVITEIRTKGNSYSTCDYSLVESAGELLLVRKISN----------------VD 488
           DV+ G SPV+       + +      LVES GELLLV                     + 
Sbjct: 224 DVADGSSPVVN--LAASSVFGGDKKVLVESEGELLLVDTYFTMYHDDDEHVRWMIERMIH 281

Query: 487 FKVLQLDPISKTWTEIRTLQNHAIFLDYKNSTSLLASDDSGFKGNCIYFNYNNFKS--ED 314
           FKV +LD   + W EI +L +  +FL   +S S  ASD  G KGN I F   +F S  E+
Sbjct: 282 FKVFRLDQREQKWVEIESLGDRLLFLGDDSSFSARASDFYGCKGNSICFTNISFFSDAEE 341

Query: 313 SRNSQPHDVGIFNLEDESVEKFRGYSCDSRSITQPQIWVT 194
              S+   +G+F+L+  S+     Y+  S++I  P  WV+
Sbjct: 342 DDASRSGTIGVFDLDSGSIGPLSSYANYSKTIWPPPAWVS 381


>ref|XP_002278304.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 394

 Score = 97.1 bits (240), Expect = 9e-18
 Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 10/229 (4%)
 Frame = -1

Query: 853 DSRKVHKKAVLSSCPTSLIDNEECLVMSIFCDGSLWFHHMGNTDWAHVVHPEYSKRYEDI 674
           D   +HK  V  S   S  + E+ ++++I   G L     GN     ++  +     +D+
Sbjct: 148 DEGSLHKGKVAFS---STGNGEDFVMITIHVSGKLAMFRHGNKRL--ILINDTPSPCDDL 202

Query: 673 VYFKGKFYAVDNDGRVLDCDVSGPSPVITEIRTKGNSYSTCDYSLVESAGELLLV----- 509
           ++F G+FYA+DN GR +   +  P PV++ I    + +     SLVES GELL+V     
Sbjct: 203 IFFNGEFYAIDNTGRTVVVAIGSP-PVLSLIAD--SVFGGDKKSLVESNGELLMVDTYFG 259

Query: 508 -----RKISNVDFKVLQLDPISKTWTEIRTLQNHAIFLDYKNSTSLLASDDSGFKGNCIY 344
                R    V FKV +LD I   W E+ +L N  +FL  K++ S +AS+  G +GNCIY
Sbjct: 260 QGIHRRMKRAVRFKVFKLDQIGHMWVEVESLGNRILFLGEKSTFSAVASEFCGCEGNCIY 319

Query: 343 FNYNNFKSEDSRNSQPHDVGIFNLEDESVEKFRGYSCDSRSITQPQIWV 197
           +    F      ++    + IFNLE+ ++     +   S+ I  P  WV
Sbjct: 320 YTNTFFCPNGQGDNAYTAIDIFNLENGNMGPLLSFPDYSKVIWPPPAWV 368