BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027699
         (265 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA98003.1| retrotransposon protein, putative, unclassified [...    77   1e-12
emb|CAE04647.2| OSJNBa0061G20.3 [Oryza sativa Japonica Group]          75   7e-12
gb|AAP53786.1| retrotransposon protein, putative, LINE subclass ...    74   1e-11
gb|ABN08697.1| RNA-directed DNA polymerase ; Ribonuclease H, put...    74   1e-11
ref|XP_003553268.1| PREDICTED: putative ribonuclease H protein A...    74   2e-11

>gb|ABA98003.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 583

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 39/82 (47%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
 Frame = +2

Query: 23  SFP-TYLGIPSVFNGRNKRQHFLPLMQKFNNRLATWKSSLLSKGGRLTLINSVLSALPTH 199
           SFP TYLG+P +  GR ++ HF PL  K   R + WK SLL  GGR  ++NSVLSA+PT+
Sbjct: 296 SFPLTYLGLP-LTPGRLRKVHFQPLQDKIKGRFSGWKPSLLYMGGRRIMVNSVLSAIPTY 354

Query: 200 VMSYIQLPVNIIEEMDKIRRNF 265
            ++ ++ P   ++E+DK RR F
Sbjct: 355 TLTVLKPPKQSLQEIDKARRRF 376


>emb|CAE04647.2| OSJNBa0061G20.3 [Oryza sativa Japonica Group]
          Length = 1463

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 36/82 (43%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
 Frame = +2

Query: 23   SFP-TYLGIPSVFNGRNKRQHFLPLMQKFNNRLATWKSSLLSKGGRLTLINSVLSALPTH 199
            +FP TYLG+P +  GR KR H  P+M K  +RLA WK  L+ + GR TL+ S+ S++PT+
Sbjct: 1103 NFPITYLGLP-LTPGRIKRIHLQPVMDKLQSRLAGWKGKLIQQSGRKTLVTSIFSSIPTY 1161

Query: 200  VMSYIQLPVNIIEEMDKIRRNF 265
             ++ ++ P   + +MDKIR+ F
Sbjct: 1162 FLTTLKPPKQFLTDMDKIRKKF 1183


>gb|AAP53786.1| retrotransposon protein, putative, LINE subclass [Oryza sativa
           Japonica Group]
          Length = 419

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 37/82 (45%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
 Frame = +2

Query: 23  SFP-TYLGIPSVFNGRNKRQHFLPLMQKFNNRLATWKSSLLSKGGRLTLINSVLSALPTH 199
           +FP TYLG+P +  GR KR H  P+M K  +RLA WK  L+ + GR TL+ SVLS++PT+
Sbjct: 158 NFPITYLGLP-LTPGRIKRIHLQPVMDKLQSRLAGWKRKLIQQSGRKTLVTSVLSSIPTY 216

Query: 200 VMSYIQLPVNIIEEMDKIRRNF 265
            ++ ++ P   + +MDKI + F
Sbjct: 217 FLTALKPPKQFLTDMDKISKKF 238


>gb|ABN08697.1| RNA-directed DNA polymerase ; Ribonuclease H, putative [Medicago
           truncatula]
          Length = 291

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 37/84 (44%), Positives = 53/84 (63%)
 Frame = +2

Query: 14  CTVSFPTYLGIPSVFNGRNKRQHFLPLMQKFNNRLATWKSSLLSKGGRLTLINSVLSALP 193
           C  S   YLG P + +GR+KR  F  +++K   RLA+W + LL++ GR+TL  SVLS++P
Sbjct: 34  CITSLEKYLGFP-MLHGRSKRSDFNLIIEKMQARLASWNNKLLNRTGRVTLATSVLSSIP 92

Query: 194 THVMSYIQLPVNIIEEMDKIRRNF 265
           T+ M    LP NI + +D   RNF
Sbjct: 93  TYYMQINWLPQNICDSIDHTTRNF 116


>ref|XP_003553268.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
           max]
          Length = 625

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 37/83 (44%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
 Frame = +2

Query: 20  VSFP-TYLGIPSVFNGRNKRQHFLPLMQKFNNRLATWKSSLLSKGGRLTLINSVLSALPT 196
           + FP +YLGIP V +       + PL+ KF +RLA WK   LS GGR++LINSVLSA+P 
Sbjct: 151 LGFPFSYLGIP-VGSSSKSWNVWQPLISKFESRLAKWKQRCLSMGGRISLINSVLSAMPI 209

Query: 197 HVMSYIQLPVNIIEEMDKIRRNF 265
           +++S+ ++P  ++++   I+RNF
Sbjct: 210 YLLSFFKIPKKVVQKAVSIQRNF 232