BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027654
         (371 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17585.3| unnamed protein product [Vitis vinifera]              134   1e-29
ref|XP_002269506.1| PREDICTED: pentatricopeptide repeat-containi...   134   1e-29
ref|XP_003611888.1| Pentatricopeptide repeat-containing protein ...   127   1e-27
ref|XP_002533281.1| pentatricopeptide repeat-containing protein,...   118   6e-25
ref|XP_003538834.1| PREDICTED: pentatricopeptide repeat-containi...   116   2e-24

>emb|CBI17585.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  134 bits (336), Expect = 1e-29
 Identities = 68/122 (55%), Positives = 101/122 (82%)
 Frame = -1

Query: 368 RSKLIDSIRLSLRSNSPQTHLPKLLTHPSLDSFVITNSLRSAPSPDSALSLFQTITQTHP 189
           R++LIDSIRL LRSN+P++ +P LL  P++DSFV+ N+L+SAPSPDSALSL + I +T P
Sbjct: 38  RARLIDSIRLILRSNAPRSLIP-LLNDPTVDSFVVANALQSAPSPDSALSLLE-ILKTIP 95

Query: 188 NFTHTQPTLHTLAKLLAKSRKISELRALITDINAGKYTNIPRVTFMELLQFYSIAGDFDS 9
           +F HTQ T+  LAK+LAKS++ +EL++L+ DINAGK+ N+ R++FMEL+++++ AGD +S
Sbjct: 96  HFCHTQATIRALAKILAKSQRSAELKSLVDDINAGKFWNV-RISFMELMKWHAAAGDLES 154

Query: 8   AI 3
            +
Sbjct: 155 VL 156


>ref|XP_002269506.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66631-like [Vitis vinifera]
          Length = 660

 Score =  134 bits (336), Expect = 1e-29
 Identities = 68/122 (55%), Positives = 101/122 (82%)
 Frame = -1

Query: 368 RSKLIDSIRLSLRSNSPQTHLPKLLTHPSLDSFVITNSLRSAPSPDSALSLFQTITQTHP 189
           R++LIDSIRL LRSN+P++ +P LL  P++DSFV+ N+L+SAPSPDSALSL + I +T P
Sbjct: 38  RARLIDSIRLILRSNAPRSLIP-LLNDPTVDSFVVANALQSAPSPDSALSLLE-ILKTIP 95

Query: 188 NFTHTQPTLHTLAKLLAKSRKISELRALITDINAGKYTNIPRVTFMELLQFYSIAGDFDS 9
           +F HTQ T+  LAK+LAKS++ +EL++L+ DINAGK+ N+ R++FMEL+++++ AGD +S
Sbjct: 96  HFCHTQATIRALAKILAKSQRSAELKSLVDDINAGKFWNV-RISFMELMKWHAAAGDLES 154

Query: 8   AI 3
            +
Sbjct: 155 VL 156


>ref|XP_003611888.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513223|gb|AES94846.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 659

 Score =  127 bits (319), Expect = 1e-27
 Identities = 68/123 (55%), Positives = 91/123 (73%), Gaps = 1/123 (0%)
 Frame = -1

Query: 368 RSKLIDSIRLSLRSNSPQTHLPKLLTHPSLDSFVITNSLRSAPSPDSALSLFQTITQT-H 192
           R+KLIDSIRLSLRSN+P + L  L+ H   DSFV+T++LRSAP  DSALSL  TI  T  
Sbjct: 41  RAKLIDSIRLSLRSNNPNSTLSTLINHRLFDSFVLTHALRSAPCADSALSLIHTIENTKS 100

Query: 191 PNFTHTQPTLHTLAKLLAKSRKISELRALITDINAGKYTNIPRVTFMELLQFYSIAGDFD 12
            NF+HTQ TLH LA +LAKS K+ EL++LI DI + ++ N+ +++FM L+Q+Y+ A D D
Sbjct: 101 SNFSHTQNTLHALATVLAKSGKLVELKSLIDDIESKRFGNV-KISFMNLMQWYAAAKDID 159

Query: 11  SAI 3
           S +
Sbjct: 160 SVV 162


>ref|XP_002533281.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526906|gb|EEF29113.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 652

 Score =  118 bits (295), Expect = 6e-25
 Identities = 64/123 (52%), Positives = 89/123 (72%)
 Frame = -1

Query: 371 QRSKLIDSIRLSLRSNSPQTHLPKLLTHPSLDSFVITNSLRSAPSPDSALSLFQTITQTH 192
           +R++LIDSIRL+LRSNSP +    L     LD FVIT+++RSAPS DSAL L + I +  
Sbjct: 37  RRAELIDSIRLALRSNSPNSITTFLNNTRILDPFVITHTIRSAPSADSALFLIE-ILKNI 95

Query: 191 PNFTHTQPTLHTLAKLLAKSRKISELRALITDINAGKYTNIPRVTFMELLQFYSIAGDFD 12
           P+FTH Q T+H LA +LA+S K  EL++L+ +IN GKY N+ RV+FM L+Q+Y+  GD D
Sbjct: 96  PHFTHNQSTIHALATVLARSCKSFELKSLLNEINVGKYCNV-RVSFMNLMQWYAAVGDLD 154

Query: 11  SAI 3
           + +
Sbjct: 155 AVL 157


>ref|XP_003538834.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66631-like [Glycine max]
          Length = 658

 Score =  116 bits (290), Expect = 2e-24
 Identities = 59/122 (48%), Positives = 91/122 (74%)
 Frame = -1

Query: 368 RSKLIDSIRLSLRSNSPQTHLPKLLTHPSLDSFVITNSLRSAPSPDSALSLFQTITQTHP 189
           R+KLIDSIRL+LRSN+P   LP L+ H  +DSFV T++LRSAPS DSALS  + + ++  
Sbjct: 44  RAKLIDSIRLTLRSNTPNPSLPSLINHRLMDSFVATHALRSAPSADSALSFVRALEKS-S 102

Query: 188 NFTHTQPTLHTLAKLLAKSRKISELRALITDINAGKYTNIPRVTFMELLQFYSIAGDFDS 9
           +F+HT  TLH+LA +LAKS + SEL++L+ DI A ++ ++ +++FM L+Q+++   D D+
Sbjct: 103 HFSHTHHTLHSLATVLAKSGRSSELKSLVDDIRANRFGSV-QISFMNLMQWHAAVRDLDT 161

Query: 8   AI 3
            +
Sbjct: 162 VL 163