BLASTX nr result

ID: Coptis21_contig00027611 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027611
         (386 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634689.1| PREDICTED: cyclic nucleotide-gated ion chann...   211   6e-53
emb|CBI20380.3| unnamed protein product [Vitis vinifera]              211   6e-53
emb|CAN75352.1| hypothetical protein VITISV_031046 [Vitis vinifera]   211   6e-53
ref|XP_002525760.1| Cyclic nucleotide-gated ion channel, putativ...   208   4e-52
ref|XP_002330420.1| predicted protein [Populus trichocarpa] gi|2...   207   5e-52

>ref|XP_003634689.1| PREDICTED: cyclic nucleotide-gated ion channel 4-like [Vitis
           vinifera]
          Length = 667

 Score =  211 bits (536), Expect = 6e-53
 Identities = 95/126 (75%), Positives = 110/126 (87%)
 Frame = -2

Query: 379 LACEQPVYYGTTHIVRDTQRLIWGENKHVRFMCIESADNFDYGAYKWTVPLVINENRLEK 200
           LAC+ P+YYGTT +++D  RL W  NKH R  C++SADNF+YG Y+WT+ LV N+NRLEK
Sbjct: 280 LACKNPIYYGTTSLLKDRARLAWANNKHARSTCLDSADNFEYGGYRWTIQLVTNDNRLEK 339

Query: 199 ILFPIFWGLMTLSTFGNLESTTEWSEVVFNIIILTSGLLLVTMLIGNIKVFLHATTSKKQ 20
           ILFP+FWGLMTLSTFGNLESTTEW EV+FNII+LTSGL+LVTMLIGNIKVFLHATTSKKQ
Sbjct: 340 ILFPLFWGLMTLSTFGNLESTTEWLEVIFNIIVLTSGLILVTMLIGNIKVFLHATTSKKQ 399

Query: 19  AMHLKM 2
            M LKM
Sbjct: 400 TMQLKM 405


>emb|CBI20380.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  211 bits (536), Expect = 6e-53
 Identities = 95/126 (75%), Positives = 110/126 (87%)
 Frame = -2

Query: 379 LACEQPVYYGTTHIVRDTQRLIWGENKHVRFMCIESADNFDYGAYKWTVPLVINENRLEK 200
           LAC+ P+YYGTT +++D  RL W  NKH R  C++SADNF+YG Y+WT+ LV N+NRLEK
Sbjct: 152 LACKNPIYYGTTSLLKDRARLAWANNKHARSTCLDSADNFEYGGYRWTIQLVTNDNRLEK 211

Query: 199 ILFPIFWGLMTLSTFGNLESTTEWSEVVFNIIILTSGLLLVTMLIGNIKVFLHATTSKKQ 20
           ILFP+FWGLMTLSTFGNLESTTEW EV+FNII+LTSGL+LVTMLIGNIKVFLHATTSKKQ
Sbjct: 212 ILFPLFWGLMTLSTFGNLESTTEWLEVIFNIIVLTSGLILVTMLIGNIKVFLHATTSKKQ 271

Query: 19  AMHLKM 2
            M LKM
Sbjct: 272 TMQLKM 277


>emb|CAN75352.1| hypothetical protein VITISV_031046 [Vitis vinifera]
          Length = 720

 Score =  211 bits (536), Expect = 6e-53
 Identities = 95/126 (75%), Positives = 110/126 (87%)
 Frame = -2

Query: 379 LACEQPVYYGTTHIVRDTQRLIWGENKHVRFMCIESADNFDYGAYKWTVPLVINENRLEK 200
           LAC+ P+YYGTT +++D  RL W  NKH R  C++SADNF+YG Y+WT+ LV N+NRLEK
Sbjct: 333 LACKNPIYYGTTSLLKDRARLAWANNKHARSTCLDSADNFEYGGYRWTIQLVTNDNRLEK 392

Query: 199 ILFPIFWGLMTLSTFGNLESTTEWSEVVFNIIILTSGLLLVTMLIGNIKVFLHATTSKKQ 20
           ILFP+FWGLMTLSTFGNLESTTEW EV+FNII+LTSGL+LVTMLIGNIKVFLHATTSKKQ
Sbjct: 393 ILFPLFWGLMTLSTFGNLESTTEWLEVIFNIIVLTSGLILVTMLIGNIKVFLHATTSKKQ 452

Query: 19  AMHLKM 2
            M LKM
Sbjct: 453 TMQLKM 458


>ref|XP_002525760.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
           gi|223534910|gb|EEF36596.1| Cyclic nucleotide-gated ion
           channel, putative [Ricinus communis]
          Length = 687

 Score =  208 bits (529), Expect = 4e-52
 Identities = 99/127 (77%), Positives = 111/127 (87%)
 Frame = -2

Query: 382 MLACEQPVYYGTTHIVRDTQRLIWGENKHVRFMCIESADNFDYGAYKWTVPLVINENRLE 203
           +L+C++P+YYGT   VRD  RL W +NK  R  C++S+DN+DYGAYKWTV LV N +RLE
Sbjct: 299 LLSCKEPIYYGTASKVRDGARLAWADNKVARATCLDSSDNYDYGAYKWTVQLVTNGSRLE 358

Query: 202 KILFPIFWGLMTLSTFGNLESTTEWSEVVFNIIILTSGLLLVTMLIGNIKVFLHATTSKK 23
           KILFPIFWGLMTLSTFGNLESTTEW EVVFNII+LTSGLLLVTMLIGNIKVFLHATTSKK
Sbjct: 359 KILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKK 418

Query: 22  QAMHLKM 2
           QAM LKM
Sbjct: 419 QAMQLKM 425


>ref|XP_002330420.1| predicted protein [Populus trichocarpa] gi|222871805|gb|EEF08936.1|
           predicted protein [Populus trichocarpa]
          Length = 635

 Score =  207 bits (528), Expect = 5e-52
 Identities = 98/128 (76%), Positives = 111/128 (86%)
 Frame = -2

Query: 385 GMLACEQPVYYGTTHIVRDTQRLIWGENKHVRFMCIESADNFDYGAYKWTVPLVINENRL 206
           G+L+C++P+YYGTT  V +  R  W +NK  R MC++S D +DYGAYKWTV LV N++RL
Sbjct: 246 GLLSCKEPIYYGTTRKVMEKARWAWADNKLARSMCLDSPDKYDYGAYKWTVQLVTNDSRL 305

Query: 205 EKILFPIFWGLMTLSTFGNLESTTEWSEVVFNIIILTSGLLLVTMLIGNIKVFLHATTSK 26
           EKILFPIFWGLMTLSTFGNLESTTEW EVVFNII+LTSGLLLVTMLIGNIKVFLHATTSK
Sbjct: 306 EKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSK 365

Query: 25  KQAMHLKM 2
           KQAM LKM
Sbjct: 366 KQAMQLKM 373


Top