BLASTX nr result
ID: Coptis21_contig00027593
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00027593
(1317 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2... 177 3e-47
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 157 1e-42
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 134 2e-37
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 137 8e-37
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 141 3e-36
>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
predicted protein [Populus trichocarpa]
Length = 517
Score = 177 bits (450), Expect(2) = 3e-47
Identities = 103/318 (32%), Positives = 163/318 (51%), Gaps = 5/318 (1%)
Frame = +3
Query: 294 LTYAGRLLLIQSILSSFHIYWARTFILPVGILDKVAKLSNRFIWSGATMERKMHKACHET 473
L+YAGR+ LI S+L S +YWA F+LP ++ V ++ F+WSG+ M K +
Sbjct: 92 LSYAGRVQLINSVLFSIQVYWASLFLLPGQVIKNVEQIMKSFLWSGSDMRTTGAKVAWDQ 151
Query: 474 LRLSKEEGGLSIIDPRVWNKAAYCGLIFKVASKED-TLWAKWIWEYQIKNKNF*TMKIPS 650
+ L K+EGGL I + WNK A I+ + + D ++W+ WI ++ +NF T+K P
Sbjct: 152 VCLPKKEGGLGIKSIKEWNKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGRNFWTIKTPQ 211
Query: 651 DSSWVC*NILKSRKTARKFIKHLIVNGEATKLWHDPWLQDHPLLLNVQAQASLH---LPD 821
+ SW ILK R A +K++I +G T LW D W H L + + ++ +
Sbjct: 212 NCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNW-HPHSPLADSYGERFIYDSGMAK 270
Query: 822 DATVSRLITNGRWNA-LVHNLPDGALKESILNTEIITNLDQDLVVWXXXXXXXXXXXXAY 998
+A V+ LI N W + + E+I + +D +VW A+
Sbjct: 271 NAKVNVLIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQKDELVWLDSPNHRFSVKVAW 330
Query: 999 VALRKMREKLKWYKLV*GKLNIPKHSFVTWQLFAGCLSTQDKLMQRKILNHSKCCLCNSG 1178
LR+ R+ ++W+ +V K +P+HSF+ W L+TQDKL + I ++C LC
Sbjct: 331 EQLRRHRQMVEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQDKLHRFGIHGPNRCSLCLRN 390
Query: 1179 PENSKHLFFNCPYSKEVW 1232
E+ HLFF C Y+K +W
Sbjct: 391 NEDHNHLFFECSYTKAIW 408
Score = 38.5 bits (88), Expect(2) = 3e-47
Identities = 23/77 (29%), Positives = 36/77 (46%)
Frame = +1
Query: 22 IKEVFKSFTSLTGLQVNXXXXXXXXXXXXQDDSQALAHILDVSLVTPPIKYLGLPLSSLR 201
I+ V F L+GL N + + + HIL P+KYLG+PL S R
Sbjct: 8 IRTVLTKFQDLSGLYPNPNKSDIFLSGVLNAEREQIIHILGFREGELPMKYLGVPLLSSR 67
Query: 202 IGTKDCLPLLEMITNRM 252
+ C L++ IT+++
Sbjct: 68 LKAIYCKGLVDRITSKV 84
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 157 bits (398), Expect(2) = 1e-42
Identities = 101/329 (30%), Positives = 158/329 (48%), Gaps = 9/329 (2%)
Frame = +3
Query: 294 LTYAGRLLLIQSILSSFHIYWARTFILPVGILDKVAKLSNRFIWSGATMERKMHKACHET 473
L++AGRL LI+S+LSS +W F LP L ++ K+ + F+WSG + K K
Sbjct: 952 LSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSE 1011
Query: 474 LRLSKEEGGLSIIDPRVWNKAAYCGLIFKVASKEDTLWAKWIWEYQIKNKNF*TMKIPSD 653
+ KEEGGL + + N+ + LI+++ S D+LW KW+ ++ I+ + F ++K +
Sbjct: 1012 VCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTG 1071
Query: 654 -SSWVC*NILKSRKTARKFIKHLIVNGEATKLWHDPW-----LQDHPLLLNVQAQASLHL 815
SW+ ILK R AR F + + +G T WHD W L H + + L +
Sbjct: 1072 LGSWLWRKILKQRDKARLFHRMEVRSGTFTSFWHDHWCPLGRLHQH---MGSRGTIDLGI 1128
Query: 816 PDDATVSRLITNGRWNALVHNLPDGALKESILNTEIITNLDQDLVVWXXXXXXXXXXXXA 995
P++ATV+ ++ R + + +K I + D D +W +
Sbjct: 1129 PNNATVAEVMNTHRRKRHRADFLN-QIKSQIELARQDRSTDGDRSLWKQKEDTFKSSFSS 1187
Query: 996 ---YVALRKMREKLKWYKLV*GKLNIPKHSFVTWQLFAGCLSTQDKLMQRKILNHSKCCL 1166
+ +R + + WY+ V + PK+SFVTW F L+T DK+ + C
Sbjct: 1188 SKTWQQIRSISLRCDWYRGVWFSASTPKYSFVTWLAFHNRLTTSDKICKWNSGARYDCVF 1247
Query: 1167 CNSGPENSKHLFFNCPYSKEVWSYLKKAL 1253
C E HLFF+CPYS VW L K L
Sbjct: 1248 CGEELETRDHLFFSCPYSSHVWFSLTKGL 1276
Score = 43.5 bits (101), Expect(2) = 1e-42
Identities = 24/85 (28%), Positives = 43/85 (50%)
Frame = +1
Query: 4 TRSILSIKEVFKSFTSLTGLQVNXXXXXXXXXXXXQDDSQALAHILDVSLVTPPIKYLGL 183
++SI +F+ F +++ L+++ + ++ L T P+KYLGL
Sbjct: 862 SKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGL 921
Query: 184 PLSSLRIGTKDCLPLLEMITNRMTN 258
PL + R+ D LPL+E I R+T+
Sbjct: 922 PLLTKRMTQSDYLPLVEKIRARITS 946
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 134 bits (338), Expect(2) = 2e-37
Identities = 97/346 (28%), Positives = 156/346 (45%), Gaps = 9/346 (2%)
Frame = +3
Query: 294 LTYAGRLLLIQSILSSFHIYWARTFILPVGILDKVAKLSNRFIWSGATMERKMHKACHET 473
L+YAGRL LI S+L S +W F LP + ++ K+ + F+WSG M K
Sbjct: 805 LSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHM 864
Query: 474 LRLSKEEGGLSIIDPRVWNKAAYCGLIFKVASKEDTLWAKWIWEYQIKNKNF*TMK-IPS 650
+ K+EGGL + + N L++K+ S ++LW KW+ ++ ++N +F +K S
Sbjct: 865 VCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVS 924
Query: 651 DSSWVC*NILKSRKTARKFIKHLIVNGEATKLWHDPWLQDHPLLLNV--QAQASLHLPDD 824
SW+ +LK R+ A+ K + NG+ T W+D W LL + L +
Sbjct: 925 QGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQLLERTGDRGLIDLGISRR 984
Query: 825 ATVSRLITNGRWNAL---VHNLPDGALKESILNTEIITNLDQDLVVW---XXXXXXXXXX 986
TV TN R V+N+ + ALK+S +T T +D V+W
Sbjct: 985 MTVEEAWTNRRQRRHRNDVYNVIEDALKKS-WDTRTET---EDKVLWRGKSDVFRTTFST 1040
Query: 987 XXAYVALRKMREKLKWYKLV*GKLNIPKHSFVTWQLFAGCLSTQDKLMQRKILNHSKCCL 1166
+ R ++ W+K++ PK+SF +W G L T D+++ + C
Sbjct: 1041 RDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGDRMINWANGIATDCIF 1100
Query: 1167 CNSGPENSKHLFFNCPYSKEVWSYLKKALGFCPLVQASTSEWYMIL 1304
C E HLFF C ++ +W L + + TS W I+
Sbjct: 1101 CQGTLETRDHLFFTCSFTSVIWVDLARGI----FKTQYTSHWQSII 1142
Score = 48.9 bits (115), Expect(2) = 2e-37
Identities = 28/82 (34%), Positives = 40/82 (48%)
Frame = +1
Query: 7 RSILSIKEVFKSFTSLTGLQVNXXXXXXXXXXXXQDDSQALAHILDVSLVTPPIKYLGLP 186
RSI I +VF F +GL+++ +A S P++YLGLP
Sbjct: 716 RSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLP 775
Query: 187 LSSLRIGTKDCLPLLEMITNRM 252
L + R+ T DCLPLLE + R+
Sbjct: 776 LITKRLSTTDCLPLLEQVRKRI 797
>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 137 bits (345), Expect(2) = 8e-37
Identities = 97/345 (28%), Positives = 159/345 (46%), Gaps = 8/345 (2%)
Frame = +3
Query: 294 LTYAGRLLLIQSILSSFHIYWARTFILPVGILDKVAKLSNRFIWSGATMERKMHKACHET 473
L++AGRL LI S+L S +W F LP L ++ + + F+WSG + R+ K +
Sbjct: 210 LSFAGRLNLISSVLWSTMNFWMSAFRLPSACLKEINSICSAFLWSGPELHRRKAKVSWDD 269
Query: 474 LRLSKEEGGLSIIDPRVWNKAAYCGLIFKVASKEDTLWAKWIWEYQIKNKNF*TMKIPSD 653
+ K+EGGL + N + LI++V S +D+LW KW +K ++F ++ S
Sbjct: 270 ICKPKQEGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSLTPNSS 329
Query: 654 -SSWVC*NILKSRKTARKFIKHLIVNGEATKLWHDPWLQDHPLL--LNVQAQASLHLPDD 824
SW+ +LK R+TA+ F + + NG T W D W L+ + Q L + +
Sbjct: 330 LGSWMWKKMLKYRETAKPFSRVEVNNGARTSFWFDNWSGMGHLMDVTGQRGQIDLGISRN 389
Query: 825 ATVSRLITNGRWNALVHNLPDGALKESILNTEIITN--LDQDLVVW---XXXXXXXXXXX 989
TV+ +N R H E+ LN + T L +D +W
Sbjct: 390 KTVAEAWSNRRRRK--HRTEQLNDIEAALNQKYQTRNLLREDATLWRGKGDVFKTSFSTK 447
Query: 990 XAYVALRKMREKLKWYKLV*GKLNIPKHSFVTWQLFAGCLSTQDKLMQRKILNHSKCCLC 1169
+ +RK ++ WYK V + PK+ F TW LST ++ + KC C
Sbjct: 448 DTWNQVRKKSNEVAWYKGVWFSHSTPKYQFCTWLALRNRLSTGYRMQLWNNGSDVKCTFC 507
Query: 1170 NSGPENSKHLFFNCPYSKEVWSYLKKALGFCPLVQASTSEWYMIL 1304
++ E HLFF+C Y+ +W+ + K + L +++W I+
Sbjct: 508 STSIETRDHLFFSCSYASAIWTAIAKNV----LQHRFSTDWQTIV 548
Score = 44.3 bits (103), Expect(2) = 8e-37
Identities = 26/84 (30%), Positives = 38/84 (45%)
Frame = +1
Query: 1 ETRSILSIKEVFKSFTSLTGLQVNXXXXXXXXXXXXQDDSQALAHILDVSLVTPPIKYLG 180
+ RS+ I EV F +GLQ+N + + L P++YLG
Sbjct: 119 KVRSVDGIVEVMNLFAKRSGLQINMEKTTLYTAGVSDHNRYMMISRYPFGLGQLPVRYLG 178
Query: 181 LPLSSLRIGTKDCLPLLEMITNRM 252
LPL + R+ +D PL E I NR+
Sbjct: 179 LPLVTKRLTKEDLSPLFEQIRNRI 202
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 141 bits (355), Expect(2) = 3e-36
Identities = 98/335 (29%), Positives = 151/335 (45%), Gaps = 15/335 (4%)
Frame = +3
Query: 294 LTYAGRLLLIQSILSSFHIYWARTFILPVGILDKVAKLSNRFIWSGATMERKMHKACHET 473
L+YAGRL L+ S++ S +W + LP G + ++ KL + F+WSG + K K +
Sbjct: 1102 LSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFLWSGPVLNPKKAKIAWSS 1161
Query: 474 LRLSKEEGGLSIIDPRVWNKAAYCGLIFKVASKEDTLWAKWIWEYQIKNKNF*TMKIPSD 653
+ K+EGGL I NK + LI+++ S + +LW WIW + I+ F + S
Sbjct: 1162 ICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWIWTFIIRKGTFWSANERSS 1221
Query: 654 -SSWVC*NILKSRKTARKFIKHLIVNGEATKLWHDPWLQDHPLL--LNVQAQASLHLPDD 824
SW+ +LK R+ A+ K + NG +T W+D W LL + L +P +
Sbjct: 1222 LGSWMWKKLLKYRELAKSMHKVEVRNGSSTSFWYDHWSHLGRLLDITGTRRVIDLGIPLE 1281
Query: 825 A---TVSRLITNGRWNALVHNLPDGALKESILNTEIITNLDQ------DLVVWXXXXXXX 977
TV R + + A ++N +N EI Q D+ +W
Sbjct: 1282 TNLETVLRTHQHRQHRAAIYNR---------INAEIQRLQQQEREAGPDISLWRSLKNDF 1332
Query: 978 XXXXXAYVA---LRKMREKLKWYKLV*GKLNIPKHSFVTWQLFAGCLSTQDKLMQRKILN 1148
V +R + + WYK V + PK+SF+ W LST D++
Sbjct: 1333 NKRFITKVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQ 1392
Query: 1149 HSKCCLCNSGPENSKHLFFNCPYSKEVWSYLKKAL 1253
C LCN+ E HLFF+C Y+ VW L + L
Sbjct: 1393 LVTCTLCNNAEETRDHLFFSCQYTSYVWEALTQRL 1427
Score = 38.5 bits (88), Expect(2) = 3e-36
Identities = 22/83 (26%), Positives = 38/83 (45%)
Frame = +1
Query: 10 SILSIKEVFKSFTSLTGLQVNXXXXXXXXXXXXQDDSQALAHILDVSLVTPPIKYLGLPL 189
SI + VFK F +GLQ++ D + P++YLGLPL
Sbjct: 1014 SIEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPL 1073
Query: 190 SSLRIGTKDCLPLLEMITNRMTN 258
+ ++ T D PL+E + ++++
Sbjct: 1074 LTKQMTTADYSPLIEAVKTKISS 1096