BLASTX nr result

ID: Coptis21_contig00027556 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027556
         (434 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN75064.1| hypothetical protein VITISV_025472 [Vitis vinifera]    60   2e-07
emb|CBI25120.3| unnamed protein product [Vitis vinifera]               58   7e-07
ref|XP_002313930.1| predicted protein [Populus trichocarpa] gi|2...    58   7e-07
ref|XP_002522091.1| conserved hypothetical protein [Ricinus comm...    57   2e-06

>emb|CAN75064.1| hypothetical protein VITISV_025472 [Vitis vinifera]
          Length = 1013

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 30/169 (17%)
 Frame = +2

Query: 11   MVATTTFVYLTQKKAKS-AKVGDTV*QVLSKKTISKSLSACSE*DRYLS*VQ---PIEMV 178
            +     F++L Q+K  + +     + Q+L+KK      ++     + LS       ++MV
Sbjct: 831  LTVAAAFIFLKQQKPPTPSPAAIPMDQLLAKKLAPIPTASVENTHQGLSSRNWPTEVDMV 890

Query: 179  GDSGRLEVS-----TSYKR---------------SLGFSQRGTERVNEVQSQEK------ 280
            G+S   E+S     TSY +               S  ++Q+G++  +E QSQE+      
Sbjct: 891  GESCPSEMSSFQRSTSYGKRGSKGASFTSEYSMGSPSYNQKGSKGASEAQSQERGLRKSN 950

Query: 281  RHKRXXXXXXXXXXXXXXXXFTTYEKIQSKHRCGEEEVVTPVRRSSRIR 427
            + +                 FT+YEKI  KH CG+EEVVTPVRRSSRIR
Sbjct: 951  KRESLASSSEYSTGSPSYGSFTSYEKIHIKHGCGDEEVVTPVRRSSRIR 999


>emb|CBI25120.3| unnamed protein product [Vitis vinifera]
          Length = 137

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
 Frame = +2

Query: 221 SLGFSQRGTERVNEVQSQEK------RHKRXXXXXXXXXXXXXXXXFTTYEKIQSKHRCG 382
           S  ++Q+G++  +E QSQE+      + +                 FT+YEKI  KH CG
Sbjct: 3   SPSYNQKGSKGASEAQSQERGLRKSNKRESLASSSEYSTGSPSYGSFTSYEKIHIKHGCG 62

Query: 383 EEEVVTPVRRSSRIR 427
           +EEVVTPVRRSSRIR
Sbjct: 63  DEEVVTPVRRSSRIR 77


>ref|XP_002313930.1| predicted protein [Populus trichocarpa] gi|222850338|gb|EEE87885.1|
            predicted protein [Populus trichocarpa]
          Length = 793

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 8/143 (5%)
 Frame = +2

Query: 23   TTFVYLTQKKAKSAKVGDTV*QV-LSKKTISKSLSACSE*DRYLS*VQPIEMVGDSGRLE 199
            T F+Y+  +   +     TV QV ++KK     LS  +E +         ++ G+S   E
Sbjct: 657  TVFIYMKSRAPTAQNATFTVDQVPITKKLDFCPLSVAAEHE---------DIAGESCSSE 707

Query: 200  VSTSYKRSLGFSQRGTERVNEVQSQEKR---HKRXXXXXXXXXXXXXXXX----FTTYEK 358
            +S+    SL +S++G +  +E Q+ + R   H+R                    FTTYEK
Sbjct: 708  MSSF---SLSYSKKGQKGKSEAQNSKPRKSNHRRESMASSDYSVGSMGSPSYGSFTTYEK 764

Query: 359  IQSKHRCGEEEVVTPVRRSSRIR 427
            I SKH   +EEV+TPVRRSSRIR
Sbjct: 765  IPSKHGNADEEVITPVRRSSRIR 787


>ref|XP_002522091.1| conserved hypothetical protein [Ricinus communis]
            gi|223538690|gb|EEF40291.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 868

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 39/94 (41%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
 Frame = +2

Query: 167  IEMVGDSGRLEVST-SYKRSLGFSQRGTERV-NEVQSQEKRHKRXXXXXXXXXXXXXXXX 340
            +E  G+S   E+S+  Y  S  +S++G +R+ +E QSQE++ KR                
Sbjct: 769  VETTGESCPSEMSSFQYSSSSYYSKQGQKRMTSEAQSQERKPKRSTRRESMASSDCSMGS 828

Query: 341  -----FTTYEKIQSKHRCGEEEVVTPVRRSSRIR 427
                 FTTYEKI +KH  GEE  VTPVRRSSRI+
Sbjct: 829  SSYGSFTTYEKITNKHGNGEEVWVTPVRRSSRIK 862


Top