BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027542
         (317 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003554610.1| PREDICTED: uncharacterized protein At1g09340...   115   4e-24
ref|NP_172405.1| RNA binding protein [Arabidopsis thaliana] gi|7...   115   5e-24
emb|CAA71589.1| g5bf [Arabidopsis thaliana]                           115   5e-24
dbj|BAJ33886.1| unnamed protein product [Thellungiella halophila]     115   5e-24
gb|AAM65150.1| putative RNA-binding protein [Arabidopsis thaliana]    115   5e-24

>ref|XP_003554610.1| PREDICTED: uncharacterized protein At1g09340, chloroplastic-like
           [Glycine max]
          Length = 378

 Score =  115 bits (288), Expect = 4e-24
 Identities = 59/96 (61%), Positives = 70/96 (72%)
 Frame = +1

Query: 28  MARVVVVQQKQPAXXXXXXXXXXXXGIRFNQPIQYKQKVCHKPRSALQVTASSAKKILIM 207
           MARVV +QQ Q +            G R    +Q+K+K+CH P+ +  V+ASS KKILIM
Sbjct: 1   MARVVALQQNQLSFSPLASSLFDFSGTRLQTQLQFKRKLCH-PKGSFYVSASSTKKILIM 59

Query: 208 GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPIAQQLP 315
           GGTRFIG+FLSRLLVKEGHQVTLFTRGKAP+ QQLP
Sbjct: 60  GGTRFIGVFLSRLLVKEGHQVTLFTRGKAPVTQQLP 95


>ref|NP_172405.1| RNA binding protein [Arabidopsis thaliana]
           gi|75313128|sp|Q9SA52.1|CP41B_ARATH RecName:
           Full=Chloroplast stem-loop binding protein of 41 kDa b,
           chloroplastic; Short=CSP41-b; AltName:
           Full=Heteroglycan-interacting protein 1.3; AltName:
           Full=Protein CHLOROPLAST RNA BINDING; AltName:
           Full=Protein Gb5f; Flags: Precursor
           gi|11762234|gb|AAG40395.1|AF325043_1 At1g09340
           [Arabidopsis thaliana]
           gi|16226247|gb|AAL16114.1|AF428282_1 At1g09340/T31J12_6
           [Arabidopsis thaliana] gi|4337177|gb|AAD18098.1|
           Identical to gb|Y10557 g5bf gene from Arabidopsis
           thaliana. ESTs gb|R30578, gb|R90475, gb|T22384,
           gb|T22425, gb|N64934 and gb|T46767 come from this gene
           [Arabidopsis thaliana] gi|14334754|gb|AAK59555.1|
           putative RNA-binding protein [Arabidopsis thaliana]
           gi|17979099|gb|AAL47493.1| putative RNA-binding protein
           [Arabidopsis thaliana] gi|332190310|gb|AEE28431.1| RNA
           binding protein [Arabidopsis thaliana]
          Length = 378

 Score =  115 bits (287), Expect = 5e-24
 Identities = 58/96 (60%), Positives = 75/96 (78%)
 Frame = +1

Query: 28  MARVVVVQQKQPAXXXXXXXXXXXXGIRFNQPIQYKQKVCHKPRSALQVTASSAKKILIM 207
           MA+++++QQ QP+            G + +  +QYK+KV H+P+ AL V+ASS KKILIM
Sbjct: 1   MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKV-HQPKGALYVSASSEKKILIM 59

Query: 208 GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPIAQQLP 315
           GGTRFIG+FLSR+LVKEGHQVTLFTRGK+PIA+QLP
Sbjct: 60  GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLP 95


>emb|CAA71589.1| g5bf [Arabidopsis thaliana]
          Length = 378

 Score =  115 bits (287), Expect = 5e-24
 Identities = 58/96 (60%), Positives = 75/96 (78%)
 Frame = +1

Query: 28  MARVVVVQQKQPAXXXXXXXXXXXXGIRFNQPIQYKQKVCHKPRSALQVTASSAKKILIM 207
           MA+++++QQ QP+            G + +  +QYK+KV H+P+ AL V+ASS KKILIM
Sbjct: 1   MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKV-HQPKGALYVSASSEKKILIM 59

Query: 208 GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPIAQQLP 315
           GGTRFIG+FLSR+LVKEGHQVTLFTRGK+PIA+QLP
Sbjct: 60  GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLP 95


>dbj|BAJ33886.1| unnamed protein product [Thellungiella halophila]
          Length = 379

 Score =  115 bits (287), Expect = 5e-24
 Identities = 58/96 (60%), Positives = 75/96 (78%)
 Frame = +1

Query: 28  MARVVVVQQKQPAXXXXXXXXXXXXGIRFNQPIQYKQKVCHKPRSALQVTASSAKKILIM 207
           MA+++++QQ QP+            G + +  +QYK+KV ++P+ AL V+ASS KKILIM
Sbjct: 1   MAKIMMLQQSQPSFSLLTSSLSDFNGAKLHLQVQYKRKV-YQPKGALYVSASSEKKILIM 59

Query: 208 GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPIAQQLP 315
           GGTRFIG+FLSRLLVKEGHQVTLFTRGK+PIA+QLP
Sbjct: 60  GGTRFIGVFLSRLLVKEGHQVTLFTRGKSPIAKQLP 95


>gb|AAM65150.1| putative RNA-binding protein [Arabidopsis thaliana]
          Length = 378

 Score =  115 bits (287), Expect = 5e-24
 Identities = 58/96 (60%), Positives = 75/96 (78%)
 Frame = +1

Query: 28  MARVVVVQQKQPAXXXXXXXXXXXXGIRFNQPIQYKQKVCHKPRSALQVTASSAKKILIM 207
           MA+++++QQ QP+            G + +  +QYK+KV H+P+ AL V+ASS KKILIM
Sbjct: 1   MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKV-HQPKGALYVSASSEKKILIM 59

Query: 208 GGTRFIGIFLSRLLVKEGHQVTLFTRGKAPIAQQLP 315
           GGTRFIG+FLSR+LVKEGHQVTLFTRGK+PIA+QLP
Sbjct: 60  GGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLP 95