BLASTX nr result
ID: Coptis21_contig00027495
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00027495
(515 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN83876.1| hypothetical protein VITISV_014759 [Vitis vinifera] 71 1e-18
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 62 7e-18
emb|CAN63649.1| hypothetical protein VITISV_037657 [Vitis vinifera] 69 1e-15
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera] 65 2e-15
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 71 2e-15
>emb|CAN83876.1| hypothetical protein VITISV_014759 [Vitis vinifera]
Length = 430
Score = 70.9 bits (172), Expect(2) = 1e-18
Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Frame = +3
Query: 21 SPSSIQCTFCHKYGHTASNCY---RRPRNFDDDLSS*FGGLQIGPQVDPNWYPDSGATNH 191
S SS+ C C K GH A C+ + + +L+ F I D W+PDSGAT+H
Sbjct: 253 SNSSVHCQLCDKEGHLAKRCWNFLKLKKKQSANLAEAFSTCSIQDFNDSEWFPDSGATSH 312
Query: 192 MTGDA*SFTDHSDYGGNDQAQLGNGDFLPIAHTG 293
MT D + Y GN++ +GNG L I+HTG
Sbjct: 313 MTSDTEGVNQPAVYYGNERVMVGNGQSLAISHTG 346
Score = 47.0 bits (110), Expect(2) = 1e-18
Identities = 26/68 (38%), Positives = 39/68 (57%)
Frame = +1
Query: 298 SLSLSYGSHSF*LSNVLHVPNMRKNLLSVTQFTRDNSISITFYPLVF*FATYTRDLFFF* 477
S+S S LSNVL VP ++KNL+S++Q T+DN+ +TF F +
Sbjct: 347 SISSLVPSSPLLLSNVLVVPGIKKNLISISQLTKDNNCYVTFSSSGFTIQDRVTRVVLGV 406
Query: 478 GQCKDGLY 501
G+C++GLY
Sbjct: 407 GRCENGLY 414
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 61.6 bits (148), Expect(2) = 7e-18
Identities = 36/88 (40%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Frame = +3
Query: 36 QCTFCHKYGHTASNC-YRRPRNF-DDDLSS*FGGLQIGPQVDPNWYPDSGATNHMTGDA* 209
+C C + GHTA NC YR N+ D S+ Q G V WY D+GAT+H+TGD
Sbjct: 281 RCQVCSRVGHTALNCWYRFDENYVPDQRSANSAAHQNGSNVP--WYTDTGATDHITGDLD 338
Query: 210 SFTDHSDYGGNDQAQLGNGDFLPIAHTG 293
T H Y G DQ NG + I++ G
Sbjct: 339 RLTMHDKYTGTDQIIAANGTGMTISNIG 366
Score = 53.5 bits (127), Expect(2) = 7e-18
Identities = 27/65 (41%), Positives = 36/65 (55%)
Frame = +1
Query: 319 SHSF*LSNVLHVPNMRKNLLSVTQFTRDNSISITFYPLVF*FATYTRDLFFF*GQCKDGL 498
S S L +VLHVP+ KNL+SV + T DN + I F+ F G+C+DGL
Sbjct: 374 SRSLHLRSVLHVPSTHKNLISVHRLTNDNDVFIEFHSSHFLIKDRQTKAVLLHGKCRDGL 433
Query: 499 YPIKP 513
YP+ P
Sbjct: 434 YPLPP 438
>emb|CAN63649.1| hypothetical protein VITISV_037657 [Vitis vinifera]
Length = 1131
Score = 68.6 bits (166), Expect(2) = 1e-15
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Frame = +3
Query: 9 ILGPSPSSIQCTFCHKYGHTASNCYRR-PRNFDDDLSS*FGGLQIGPQV--DPNWYPDSG 179
+ G S QC C KYGH A NCY R + + +++ + P D +WY D+G
Sbjct: 246 VSGGSNGKPQCQVCGKYGHIAINCYHRFDQTYQPTMNNHLAAMVATPSTVGDESWYMDTG 305
Query: 180 ATNHMTGDA*SFTDHSDYGGNDQAQLGNGDFLPIAHTG 293
AT+H+T + H+ + G+D+ +GNG+ L I++ G
Sbjct: 306 ATHHLTPNLNKLNSHTPFAGSDKVMVGNGNRLNISNIG 343
Score = 39.3 bits (90), Expect(2) = 1e-15
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +1
Query: 304 SLSYGSHSF*LSNVLHVPNMRKNLLSVTQFTRDNSISITFYPLVF*FATYTRDLFFF*GQ 483
++S S S L N+LHVP + NL+SV + DN++++ F+ F G
Sbjct: 346 TISSVSRSLNLKNILHVPQLTTNLISVNRLCTDNNVTVEFFTNGFVVKDQASKKALLQGN 405
Query: 484 CKDGLYPI 507
GLY +
Sbjct: 406 LNYGLYKL 413
>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
Length = 1455
Score = 64.7 bits (156), Expect(2) = 2e-15
Identities = 36/103 (34%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Frame = +3
Query: 39 CTFCHKYGHTASNCYRR-------PRNFDDDLSS*FGGLQIGPQV-----------DPNW 164
C C K GH + CY R P+N SS PQV D NW
Sbjct: 310 CQLCGKIGHVVAQCYYRFDHTFQVPQNLSSRNSSPRAYYSFSPQVNGVIPTSEVFSDDNW 369
Query: 165 YPDSGATNHMTGDA*SFTDHSDYGGNDQAQLGNGDFLPIAHTG 293
YPDSGA+NH+T + + +++ G +Q +GNG L I H G
Sbjct: 370 YPDSGASNHVTPNPENLMKSAEFAGQNQVHVGNGTGLSIKHIG 412
Score = 42.4 bits (98), Expect(2) = 2e-15
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +1
Query: 283 HILVASLSLSYGSHSF*LSNVLHVPNMRKNLLSVTQFTRDNSISITFYPLVF*FATYTRD 462
HI + + S L+++LHVP++ KNLLSV++F +DN + F+
Sbjct: 410 HIGQSEFLSPFSSKPLLLNHLLHVPSITKNLLSVSKFAKDNKVFFEFHSDSCFVKDQVTQ 469
Query: 463 LFFF*GQCKDGLY 501
G+ +DGLY
Sbjct: 470 AVLMVGKVRDGLY 482
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 71.2 bits (173), Expect(2) = 2e-15
Identities = 37/94 (39%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Frame = +3
Query: 15 GPSPSSIQCTFCHKYGHTASNC-YRRPRNFDDDLSS*FGGLQIGPQVDPNWYPDSGATNH 191
G + + +C C+K GHT +C YR NF D F G + VD NWY D+GAT+H
Sbjct: 271 GGTDNRPKCQLCYKRGHTVCDCWYRYDENFVPDER--FAGTAVSYGVDTNWYLDTGATDH 328
Query: 192 MTGDA*SFTDHSDYGGNDQAQLGNGDFLPIAHTG 293
+TG+ T Y GNDQ +G + I+H G
Sbjct: 329 VTGELDKLTVRDKYHGNDQVHTASGAGMEISHIG 362
Score = 35.8 bits (81), Expect(2) = 2e-15
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +1
Query: 319 SHSF*LSNVLHVPNMRKNLLSVTQFTRDNSISITFYPLVF*FATYTRDLFFF*GQCKDGL 498
S + L +VL+VP KNL+S + T DN I Y F G+C GL
Sbjct: 370 SRNLHLKDVLYVPKANKNLVSAYKLTSDNLAFIELYRKFFFIKDLAMRRTLLRGRCHKGL 429
Query: 499 YPI 507
Y +
Sbjct: 430 YAL 432