BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027463
         (1110 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002321560.1| predicted protein [Populus trichocarpa] gi|2...   567   e-159
ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containi...   564   e-158
sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-c...   545   e-153
ref|XP_002511467.1| pentatricopeptide repeat-containing protein,...   542   e-152
ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containi...   513   e-143

>ref|XP_002321560.1| predicted protein [Populus trichocarpa] gi|222868556|gb|EEF05687.1|
            predicted protein [Populus trichocarpa]
          Length = 491

 Score =  567 bits (1461), Expect = e-159
 Identities = 268/356 (75%), Positives = 314/356 (88%)
 Frame = -1

Query: 1110 PKTFAVIMERYVSVGKADRAVKVFLSMHEHGCVQDLPSFNTLLDVLCKSRRVEMAYSFFK 931
            PKTFA+I ERY S GK  RAVKVFLSMH+ GC QDL SFNT+LDVLCKS+RVEMAY+ FK
Sbjct: 136  PKTFAIIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLFK 195

Query: 930  VFRGRFRADTISYNIIANGWCLVKRTPRALEIFKEMVERGNEPNVSTYNILLKGFFRAGQ 751
            VF+G+FRAD +SYN++ NGWCL+KRT +ALE+ KEMV+RG  PN+++YN +LKG+FRAGQ
Sbjct: 196  VFKGKFRADCVSYNVMVNGWCLIKRTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQ 255

Query: 750  IKEAWEFFLQMKKRGCVIDVVTYTTLVHGFGVVGEIARARKVFNGMIKEGCLPSVATYTA 571
            I EAW+FFL+MKKR C IDV+TYTT++HGFGV GEI RARKVF+ M+K+G LPSVATY A
Sbjct: 256  INEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNA 315

Query: 570  FIQVLCKKDNVENAIVVFEEMLRKGYVPNVTTYAVVIRGLCHAGDMNRAMEFMERMKDDG 391
            FIQVLCKKDNV+NAIV+FEEM+ KGYVPN  TY +VIRGLCH G+M RAMEFM RMKDDG
Sbjct: 316  FIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDG 375

Query: 390  CEANVQIYNVVIRYFIDAGDLEKALEIFEKMCSGDCLPNLDTYNILISAMFVRKKADDLV 211
            CE NVQ YN+VIRYF D G+++KAL++F+KM SGDCLPNLDTYNILISAMFVRKK+DDL+
Sbjct: 376  CEPNVQTYNLVIRYFCDEGEIDKALDLFQKMTSGDCLPNLDTYNILISAMFVRKKSDDLL 435

Query: 210  LAGKLLVEMVDRGFMPRRFTFNRVLNGLLLTGNQAFAKEILRAQSRSGRLPRQFKL 43
            +AG LL+EMVDRGF+PR+FTFNRVLNGLLLTGNQ FAKEILR QSR GRL R+ KL
Sbjct: 436  VAGNLLIEMVDRGFVPRKFTFNRVLNGLLLTGNQGFAKEILRLQSRCGRLTRKIKL 491


>ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
            mitochondrial-like [Cucumis sativus]
            gi|449487784|ref|XP_004157799.1| PREDICTED:
            pentatricopeptide repeat-containing protein At1g74900,
            mitochondrial-like [Cucumis sativus]
          Length = 502

 Score =  564 bits (1453), Expect = e-158
 Identities = 275/356 (77%), Positives = 317/356 (89%), Gaps = 1/356 (0%)
 Frame = -1

Query: 1107 KTFAVIMERYVSVGKADRAVKVFLSMHEHGCVQDLPSFNTLLDVLCKSRRVEMAYS-FFK 931
            KTFA+I ER+V+ GK DRA+KVFLSM EHGC QDL SFNT+LD+LCKS+RVEMAY+  FK
Sbjct: 148  KTFAIIAERFVAAGKPDRAIKVFLSMREHGCPQDLHSFNTILDILCKSKRVEMAYNNLFK 207

Query: 930  VFRGRFRADTISYNIIANGWCLVKRTPRALEIFKEMVERGNEPNVSTYNILLKGFFRAGQ 751
            V RG+F+AD +SYNIIANGWCL+KRTP+ALE+ KEMVERG  P ++TYNILLKG+FRAGQ
Sbjct: 208  VLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITTYNILLKGYFRAGQ 267

Query: 750  IKEAWEFFLQMKKRGCVIDVVTYTTLVHGFGVVGEIARARKVFNGMIKEGCLPSVATYTA 571
            +KEAWEFFLQMK+R   IDVVTYTT+VHGFGVVGEI RARKVFN M+ EG LPS ATY A
Sbjct: 268  LKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNA 327

Query: 570  FIQVLCKKDNVENAIVVFEEMLRKGYVPNVTTYAVVIRGLCHAGDMNRAMEFMERMKDDG 391
             IQVLCKKD+VENA+++FEEM++KGYVPN+TTY VVIRGL HAG+M++AMEF+ERMK DG
Sbjct: 328  MIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDG 387

Query: 390  CEANVQIYNVVIRYFIDAGDLEKALEIFEKMCSGDCLPNLDTYNILISAMFVRKKADDLV 211
            CE NVQ YNV IRYF DAGD+EK L +FEKM  G  LPNLDTYN+LISAMFVRKK++DLV
Sbjct: 388  CEPNVQTYNVAIRYFCDAGDVEKGLSMFEKMGQGS-LPNLDTYNVLISAMFVRKKSEDLV 446

Query: 210  LAGKLLVEMVDRGFMPRRFTFNRVLNGLLLTGNQAFAKEILRAQSRSGRLPRQFKL 43
            +AGKLL+EMVDRGF+PR+FTFNRVLNGLLLTGNQAFAKEILR QS+ GRLPRQFKL
Sbjct: 447  VAGKLLLEMVDRGFIPRKFTFNRVLNGLLLTGNQAFAKEILRLQSKCGRLPRQFKL 502



 Score =  115 bits (288), Expect = 2e-23
 Identities = 76/301 (25%), Positives = 131/301 (43%), Gaps = 36/301 (11%)
 Frame = -1

Query: 852 PRALEIFKEMVERGNEPN-VSTYNILLKGFFRAGQIKEAWEFFLQMKKRGCVIDVVTYTT 676
           P+AL+ FK +    +  +  S+++  +    R    K  W    +M+ R       T+  
Sbjct: 93  PKALQFFKHLEYHPSYAHSASSFDHAIDIAGRMRDYKTVWALVARMRARRIGPSSKTFAI 152

Query: 675 LVHGFGVVGEIARARKVFNGMIKEGCLPSVATYTAFIQVLCKKDNVE------------- 535
           +   F   G+  RA KVF  M + GC   + ++   + +LCK   VE             
Sbjct: 153 IAERFVAAGKPDRAIKVFLSMREHGCPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGK 212

Query: 534 ----------------------NAIVVFEEMLRKGYVPNVTTYAVVIRGLCHAGDMNRAM 421
                                  A+ V +EM+ +G  P +TTY ++++G   AG +  A 
Sbjct: 213 FKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEAW 272

Query: 420 EFMERMKDDGCEANVQIYNVVIRYFIDAGDLEKALEIFEKMCSGDCLPNLDTYNILISAM 241
           EF  +MK+   E +V  Y  ++  F   G++++A ++F +M     LP+  TYN +I  +
Sbjct: 273 EFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVL 332

Query: 240 FVRKKADDLVLAGKLLVEMVDRGFMPRRFTFNRVLNGLLLTGNQAFAKEILRAQSRSGRL 61
             +   ++ VL   +  EMV +G++P   T+N V+ GL   GN   A E +      G  
Sbjct: 333 CKKDSVENAVL---MFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCE 389

Query: 60  P 58
           P
Sbjct: 390 P 390


>sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74900,
            mitochondrial; AltName: Full=Protein ORGANELLE TRANSCRIPT
            PROCESSING DEFECT 43; Flags: Precursor
            gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535
            DUF17 domain [Arabidopsis thaliana]
            gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical
            protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score =  545 bits (1404), Expect = e-153
 Identities = 258/357 (72%), Positives = 310/357 (86%), Gaps = 1/357 (0%)
 Frame = -1

Query: 1110 PKTFAVIMERYVSVGKADRAVKVFLSMHEHGCVQDLPSFNTLLDVLCKSRRVEMAYSFFK 931
            PKTFA++ ERY S GK D+AVK+FL+MHEHGC QDL SFNT+LDVLCKS+RVE AY  F+
Sbjct: 126  PKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFR 185

Query: 930  VFRGRFRADTISYNIIANGWCLVKRTPRALEIFKEMVERGNEPNVSTYNILLKGFFRAGQ 751
              RGRF  DT++YN+I NGWCL+KRTP+ALE+ KEMVERG  PN++TYN +LKGFFRAGQ
Sbjct: 186  ALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQ 245

Query: 750  IKEAWEFFLQMKKRGCVIDVVTYTTLVHGFGVVGEIARARKVFNGMIKEGCLPSVATYTA 571
            I+ AWEFFL+MKKR C IDVVTYTT+VHGFGV GEI RAR VF+ MI+EG LPSVATY A
Sbjct: 246  IRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNA 305

Query: 570  FIQVLCKKDNVENAIVVFEEMLRKGYVPNVTTYAVVIRGLCHAGDMNRAMEFMERMKDDG 391
             IQVLCKKDNVENA+V+FEEM+R+GY PNVTTY V+IRGL HAG+ +R  E M+RM+++G
Sbjct: 306  MIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEG 365

Query: 390  CEANVQIYNVVIRYFIDAGDLEKALEIFEKMCSGDCLPNLDTYNILISAMFVRKKADDLV 211
            CE N Q YN++IRY+ +  ++EKAL +FEKM SGDCLPNLDTYNILIS MFVRK+++D+V
Sbjct: 366  CEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMV 425

Query: 210  LAGKLLVEMVDRGFMPRRFTFNRVLNGLLLTGNQAFAKEILRAQSRSG-RLPRQFKL 43
            +AGKLL+EMV+RGF+PR+FTFNRVLNGLLLTGNQAFAKEILR QS+SG RL R+F+L
Sbjct: 426  VAGKLLLEMVERGFIPRKFTFNRVLNGLLLTGNQAFAKEILRLQSKSGSRLLRKFRL 482



 Score =  111 bits (278), Expect = 3e-22
 Identities = 76/301 (25%), Positives = 132/301 (43%), Gaps = 36/301 (11%)
 Frame = -1

Query: 852 PRALEIFKEMVERGNE--PNVSTYNILLKGFFRAGQIKEAWEFFLQMKKRGCVIDVVTYT 679
           P+AL+ F  +     E   + S++++ +    R       W    +M+         T+ 
Sbjct: 71  PKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFA 130

Query: 678 TLVHGFGVVGEIARARKVFNGMIKEGCLPSVATYTAFIQVLCKKDNVE------------ 535
            +   +   G+  +A K+F  M + GC   +A++   + VLCK   VE            
Sbjct: 131 IVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGR 190

Query: 534 ----------------------NAIVVFEEMLRKGYVPNVTTYAVVIRGLCHAGDMNRAM 421
                                  A+ V +EM+ +G  PN+TTY  +++G   AG +  A 
Sbjct: 191 FSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAW 250

Query: 420 EFMERMKDDGCEANVQIYNVVIRYFIDAGDLEKALEIFEKMCSGDCLPNLDTYNILISAM 241
           EF   MK   CE +V  Y  V+  F  AG++++A  +F++M     LP++ TYN +I  +
Sbjct: 251 EFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVL 310

Query: 240 FVRKKADDLVLAGKLLVEMVDRGFMPRRFTFNRVLNGLLLTGNQAFAKEILRAQSRSGRL 61
               K D++  A  +  EMV RG+ P   T+N ++ GL   G  +  +E+++     G  
Sbjct: 311 C---KKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCE 367

Query: 60  P 58
           P
Sbjct: 368 P 368


>ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223550582|gb|EEF52069.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 482

 Score =  542 bits (1397), Expect = e-152
 Identities = 253/356 (71%), Positives = 308/356 (86%)
 Frame = -1

Query: 1110 PKTFAVIMERYVSVGKADRAVKVFLSMHEHGCVQDLPSFNTLLDVLCKSRRVEMAYSFFK 931
            P+TFA+I ERY ++GK  RAV VF+SMHE+GC QDL SFNT+LDVLCKS+RVEMAY+ FK
Sbjct: 127  PRTFAIIAERYAAMGKPHRAVTVFMSMHEYGCFQDLSSFNTILDVLCKSKRVEMAYNLFK 186

Query: 930  VFRGRFRADTISYNIIANGWCLVKRTPRALEIFKEMVERGNEPNVSTYNILLKGFFRAGQ 751
              +G+F+AD +SYNII NGWCL+KRTP+ALE+ KEMVERG  PN++TYNI+L G+FRAGQ
Sbjct: 187  ALKGKFKADCVSYNIIVNGWCLIKRTPKALEMLKEMVERGLTPNLTTYNIMLNGYFRAGQ 246

Query: 750  IKEAWEFFLQMKKRGCVIDVVTYTTLVHGFGVVGEIARARKVFNGMIKEGCLPSVATYTA 571
              EAW FFL+MKKR C IDVVTYT+++HG GVVGEI RAR VFN M+K+G LPSVAT+ A
Sbjct: 247  TNEAWGFFLEMKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVFNQMVKDGVLPSVATFNA 306

Query: 570  FIQVLCKKDNVENAIVVFEEMLRKGYVPNVTTYAVVIRGLCHAGDMNRAMEFMERMKDDG 391
             IQ+LCKKD+VENAI++FEEM+++GYVPN  TY +VIRGLCH G+M RAME MERM+DD 
Sbjct: 307  LIQILCKKDSVENAILIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQRAMELMERMEDDD 366

Query: 390  CEANVQIYNVVIRYFIDAGDLEKALEIFEKMCSGDCLPNLDTYNILISAMFVRKKADDLV 211
            CE NVQ YN++IRYF DAG++EK L++F+KM +GDCLPNLDTYNILI++MFVRK +D+L+
Sbjct: 367  CEPNVQTYNILIRYFCDAGEIEKGLDLFQKMGNGDCLPNLDTYNILINSMFVRKNSDNLL 426

Query: 210  LAGKLLVEMVDRGFMPRRFTFNRVLNGLLLTGNQAFAKEILRAQSRSGRLPRQFKL 43
            +AGKLLVEMVDRGF+PR+ TFNRVL+GLLLTGNQ FAKEIL  Q   GRLPR+FKL
Sbjct: 427  VAGKLLVEMVDRGFLPRKLTFNRVLDGLLLTGNQDFAKEILSLQGGCGRLPRKFKL 482


>ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
            mitochondrial-like [Glycine max]
          Length = 495

 Score =  513 bits (1320), Expect = e-143
 Identities = 248/357 (69%), Positives = 298/357 (83%), Gaps = 1/357 (0%)
 Frame = -1

Query: 1110 PKTFAVIMERYVSVGKADRAVKVFLSMHEHGCVQDLPSFNTLLDVLCKSRRVEMAYSFFK 931
            PKT A++ ERY S GK  RAV+ FLSM EHG  QDL SFNTLLD+LCKS+RVE A+S  K
Sbjct: 139  PKTLAILAERYASNGKPHRAVRTFLSMAEHGIRQDLHSFNTLLDILCKSKRVETAHSLLK 198

Query: 930  VFRGRFRADTISYNIIANGWCLVKRTPRALEIFKEMVERGNEPNVSTYNILLKGFFRAGQ 751
                RFR DT++YNI+ANG+CL+KRTP AL + KEMV+RG EP + TYN +LKG+FR+ Q
Sbjct: 199  TLTSRFRPDTVTYNILANGYCLIKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQ 258

Query: 750  IKEAWEFFLQMKKRGCVIDVVTYTTLVHGFGVVGEIARARKVFNGMIKEGCLPSVATYTA 571
            IKEAWEF+L+MKKR C IDVVTYTT++HGFGV G++ +A++VF+ M+KEG +P+VATY A
Sbjct: 259  IKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYNA 318

Query: 570  FIQVLCKKDNVENAIVVFEEMLRKGY-VPNVTTYAVVIRGLCHAGDMNRAMEFMERMKDD 394
             IQVLCKKD+VENA+VVFEEM R+G  VPNV TY VVIRGLCH GDM RA+ FMERM + 
Sbjct: 319  LIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEH 378

Query: 393  GCEANVQIYNVVIRYFIDAGDLEKALEIFEKMCSGDCLPNLDTYNILISAMFVRKKADDL 214
            G  A VQ YNVVIRYF DAG++EKALE+F KM  G CLPNLDTYN+LISAMFVRKK++DL
Sbjct: 379  GLRACVQTYNVVIRYFCDAGEVEKALEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSEDL 438

Query: 213  VLAGKLLVEMVDRGFMPRRFTFNRVLNGLLLTGNQAFAKEILRAQSRSGRLPRQFKL 43
            V+AGKLL++MVDRGF+PR+FTFNRVLNGL++TGNQ FAKEILR QSR GR+ R+ KL
Sbjct: 439  VVAGKLLMDMVDRGFLPRKFTFNRVLNGLVITGNQDFAKEILRMQSRCGRIVRRLKL 495