BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027393
         (379 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002864185.1| pentatricopeptide repeat-containing protein ...   145   3e-33
ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis...   144   7e-33
ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   142   4e-32
ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat...   142   4e-32
ref|XP_003625160.1| Pentatricopeptide repeat-containing protein ...   137   1e-30

>ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297310020|gb|EFH40444.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 588

 Score =  145 bits (367), Expect = 3e-33
 Identities = 72/125 (57%), Positives = 89/125 (71%)
 Frame = -1

Query: 379 ILSKCRNNRAPRSGRFKWDIFKTGLQIIPLLSNHLINLYSKCQRPHDSRQIFEDVPFKSP 200
           +LS  R+    +  +    I K+GL +IPL++N+LIN YSK Q P DSR+ FED P KS 
Sbjct: 22  LLSSARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSA 81

Query: 199 TSWSSIISTFAQNELPLLSLEFFRRMLEYGIRPDDHIFPSATKSCAILCRVDVGKSFHAL 20
           T+WSSIIS FAQNELP +SLEF R+M+   +RPDDH+ PSATKSC IL R D+GKS H L
Sbjct: 82  TTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKSVHCL 141

Query: 19  SKKVG 5
           S K G
Sbjct: 142 SMKTG 146



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
 Frame = -1

Query: 379 ILSKCRNNRAPRSGR-FKWDIFKTGLQIIPLLSNHLINLYSKCQRPHDSRQIFEDVPFKS 203
           ++S C N+     GR  +    K+       + + L++LYSKC     + Q+F++VP ++
Sbjct: 223 VISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMRN 282

Query: 202 PTSWSSIISTFAQNELPLLSLEFFRRMLEYGIRPDDHIFPSATKSCAILCRVDVGKSFHA 23
              W++++   AQ+      +E F+RM   G++P+   F +   +C+    VD GK +  
Sbjct: 283 LGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGKYYFD 342

Query: 22  LSKK 11
           L K+
Sbjct: 343 LMKE 346


>ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
           gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At5g52630 gi|8953718|dbj|BAA98081.1|
           selenium-binding protein-like [Arabidopsis thaliana]
           gi|332008860|gb|AED96243.1| mitochondrial RNA editing
           factor 1 [Arabidopsis thaliana]
          Length = 588

 Score =  144 bits (363), Expect = 7e-33
 Identities = 70/125 (56%), Positives = 89/125 (71%)
 Frame = -1

Query: 379 ILSKCRNNRAPRSGRFKWDIFKTGLQIIPLLSNHLINLYSKCQRPHDSRQIFEDVPFKSP 200
           +LS  R     +  +    + K+GL +IPL++N+LIN YSK Q P DSR+ FED P KS 
Sbjct: 22  LLSSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSS 81

Query: 199 TSWSSIISTFAQNELPLLSLEFFRRMLEYGIRPDDHIFPSATKSCAILCRVDVGKSFHAL 20
           T+WSSIIS FAQNELP +SLEF ++M+   +RPDDH+ PSATKSCAIL R D+G+S H L
Sbjct: 82  TTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCL 141

Query: 19  SKKVG 5
           S K G
Sbjct: 142 SMKTG 146



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
 Frame = -1

Query: 379 ILSKCRNNRAPRSGRFKWDI-FKTGLQIIPLLSNHLINLYSKCQRPHDSRQIFEDVPFKS 203
           ++S C N+     GR    +  K+       + + L++LYSKC  P  + Q+F +VP K+
Sbjct: 223 VISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKN 282

Query: 202 PTSWSSIISTFAQNELPLLSLEFFRRMLEYGIRPDDHIFPSATKSCAILCRVDVGKSF 29
              W++++  +AQ+      +E F+RM   G++P+   F +   +C+    VD G+ +
Sbjct: 283 LGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYY 340


>ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  142 bits (357), Expect = 4e-32
 Identities = 72/125 (57%), Positives = 90/125 (72%)
 Frame = -1

Query: 379 ILSKCRNNRAPRSGRFKWDIFKTGLQIIPLLSNHLINLYSKCQRPHDSRQIFEDVPFKSP 200
           +LS  R+    +  +    I K GLQ IPL+S++LINLYSK Q P  S Q+F++ P KS 
Sbjct: 32  LLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSS 91

Query: 199 TSWSSIISTFAQNELPLLSLEFFRRMLEYGIRPDDHIFPSATKSCAILCRVDVGKSFHAL 20
           T+WSS+IS FAQNE PLL+L+FFRRML  G+RPDDHI+PSATK+C  L R DVGKS H L
Sbjct: 92  TTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCL 151

Query: 19  SKKVG 5
           + K G
Sbjct: 152 AVKTG 156



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 29/103 (28%), Positives = 57/103 (55%)
 Frame = -1

Query: 316 KTGLQIIPLLSNHLINLYSKCQRPHDSRQIFEDVPFKSPTSWSSIISTFAQNELPLLSLE 137
           KTG      + + L+++Y+KC    D+R +F+++P ++  SWS +I  +AQ +  + +L 
Sbjct: 154 KTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALT 213

Query: 136 FFRRMLEYGIRPDDHIFPSATKSCAILCRVDVGKSFHALSKKV 8
            F++ L   +  +D  F S  + C+    +++GK  H L  K+
Sbjct: 214 LFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKM 256


>ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  142 bits (357), Expect = 4e-32
 Identities = 72/125 (57%), Positives = 90/125 (72%)
 Frame = -1

Query: 379 ILSKCRNNRAPRSGRFKWDIFKTGLQIIPLLSNHLINLYSKCQRPHDSRQIFEDVPFKSP 200
           +LS  R+    +  +    I K GLQ IPL+S++LINLYSK Q P  S Q+F++ P KS 
Sbjct: 32  LLSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSS 91

Query: 199 TSWSSIISTFAQNELPLLSLEFFRRMLEYGIRPDDHIFPSATKSCAILCRVDVGKSFHAL 20
           T+WSS+IS FAQNE PLL+L+FFRRML  G+RPDDHI+PSATK+C  L R DVGKS H L
Sbjct: 92  TTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCL 151

Query: 19  SKKVG 5
           + K G
Sbjct: 152 AVKTG 156



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 29/103 (28%), Positives = 57/103 (55%)
 Frame = -1

Query: 316 KTGLQIIPLLSNHLINLYSKCQRPHDSRQIFEDVPFKSPTSWSSIISTFAQNELPLLSLE 137
           KTG      + + L+++Y+KC    D+R +F+++P ++  SWS +I  +AQ +  + +L 
Sbjct: 154 KTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALT 213

Query: 136 FFRRMLEYGIRPDDHIFPSATKSCAILCRVDVGKSFHALSKKV 8
            F++ L   +  +D  F S  + C+    +++GK  H L  K+
Sbjct: 214 LFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKM 256


>ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|124360204|gb|ABN08217.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355500175|gb|AES81378.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  137 bits (344), Expect = 1e-30
 Identities = 69/123 (56%), Positives = 83/123 (67%)
 Frame = -1

Query: 379 ILSKCRNNRAPRSGRFKWDIFKTGLQIIPLLSNHLINLYSKCQRPHDSRQIFEDVPFKSP 200
           +LS   +   P+  +    I K GLQ IPLLS+HLIN YSK   P+ S QIF D P KS 
Sbjct: 27  LLSLTFSRSLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFHDSPHKSA 86

Query: 199 TSWSSIISTFAQNELPLLSLEFFRRMLEYGIRPDDHIFPSATKSCAILCRVDVGKSFHAL 20
           T+WSS+IS+FAQN+LPLLSL +FR ML  G+ PDDHIFPSATKSC IL  + V K  H  
Sbjct: 87  TTWSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGILSSLPVAKMLHCF 146

Query: 19  SKK 11
           + K
Sbjct: 147 ALK 149