BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027366
         (242 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containi...    74   2e-11
ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containi...    60   2e-07
emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]    59   3e-07
ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containi...    57   2e-06
ref|XP_002299231.1| predicted protein [Populus trichocarpa] gi|2...    56   3e-06

>ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 35/63 (55%), Positives = 48/63 (76%)
 Frame = +2

Query: 53  KTLSLLQSCKTIHQIKQLHAQLILTDQISNTFLATKLLEFYAITTKNIDDALTVFNQINE 232
           KTLS LQSCK+   +K++HAQLI+T QI +TF+ATK +E YA++ +NID A  VF  IN 
Sbjct: 29  KTLSALQSCKSTEDLKKIHAQLIITGQIKDTFIATKTVESYAVSARNIDYAFWVFVGINY 88

Query: 233 PNA 241
           P++
Sbjct: 89  PDS 91


>ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
           gi|297739328|emb|CBI28979.3| unnamed protein product
           [Vitis vinifera]
          Length = 585

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 32/61 (52%), Positives = 43/61 (70%)
 Frame = +2

Query: 59  LSLLQSCKTIHQIKQLHAQLILTDQISNTFLATKLLEFYAITTKNIDDALTVFNQINEPN 238
           LSLLQ  KT  QI Q+HAQLI T+ IS+TF A++LL+     T N++ A  VF QI++PN
Sbjct: 15  LSLLQKSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPN 74

Query: 239 A 241
           +
Sbjct: 75  S 75


>emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 32/61 (52%), Positives = 43/61 (70%)
 Frame = +2

Query: 59  LSLLQSCKTIHQIKQLHAQLILTDQISNTFLATKLLEFYAITTKNIDDALTVFNQINEPN 238
           LSLLQ  KT  QI Q+HAQLI T+ IS+TF A++LL+     T N++ A  VF QI++PN
Sbjct: 15  LSLLQXSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPN 74

Query: 239 A 241
           +
Sbjct: 75  S 75


>ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 619

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 27/59 (45%), Positives = 42/59 (71%)
 Frame = +2

Query: 62  SLLQSCKTIHQIKQLHAQLILTDQISNTFLATKLLEFYAITTKNIDDALTVFNQINEPN 238
           SLLQ+CKT++Q KQLH +++LT    N F  TKL++ YA  + ++  A+T+ +QI+ PN
Sbjct: 10  SLLQACKTLNQAKQLHHRILLTGSHHNHFFVTKLIQIYA-DSNDLRSAVTLLHQISHPN 67


>ref|XP_002299231.1| predicted protein [Populus trichocarpa] gi|222846489|gb|EEE84036.1|
           predicted protein [Populus trichocarpa]
          Length = 668

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 28/71 (39%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
 Frame = +2

Query: 29  ILTNPNQQKTLSLLQSCKTIHQIKQLHAQLILTDQISNTFLATKLLEFYAIT-TKNIDDA 205
           +L+NP     LSLL++CK+  Q+KQ+ AQ+ILT  I + F +++L+ F AI+ ++N+D  
Sbjct: 51  VLSNP----LLSLLENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAISESRNLDYC 106

Query: 206 LTVFNQINEPN 238
           + + N +  PN
Sbjct: 107 IKILNNLQNPN 117