BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027360
         (551 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD32950.1| putative non-LTR retroelement reverse transcripta...    97   2e-18
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...    95   8e-18
gb|ABN07997.1| contains similarity to reverse trancriptase , rel...    92   4e-17
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...    91   2e-16
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...    89   6e-16

>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 773

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 58/189 (30%), Positives = 88/189 (46%), Gaps = 12/189 (6%)
 Frame = -2

Query: 544 WAVGLGIDINIWKDSWIPSLPEGKIPSYITPNNLF--LSVSQLVNQATRRWNTQLLHKIF 371
           +  G G +I +WKD+W+P  P    P   T ++++  L VS L+ +   RWN  LL K+ 
Sbjct: 379 YIAGNGNNIQLWKDNWLPLNPPR--PPVGTCDSIYSQLKVSDLLIEG--RWNEDLLCKLI 434

Query: 370 DPTTVTHIEAIYLPRTDPQDKIYWNLTKKGNHIVKSMYCSLN----------PPTNHELK 221
               + HI AI    T   D I W  T  GN+ VKS Y  L           P  N    
Sbjct: 435 HQNDIPHIRAIRPSITGANDAITWIYTHDGNYSVKSGYHLLRKLSQQQHASLPSPNEVSA 494

Query: 220 TDINLAFWRNNNPPRHNLLAWKCYHNIMPTRAYLSTLFYISDKSCLLCKQSTESLHHILL 41
             +    W+ N PP+     W+  HN +PT   L     I+D +C  C +++E ++H+L 
Sbjct: 495 QTVFTNIWKQNAPPKIKHFWWRSAHNALPTAGNLKRRRLITDDTCQRCGEASEDVNHLLF 554

Query: 40  DCSFTRALW 14
            C  ++ +W
Sbjct: 555 QCRVSKEIW 563


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score = 94.7 bits (234), Expect = 8e-18
 Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 9/184 (4%)
 Frame = -2

Query: 538  VGLGIDINIWKDSWIPSL---PEGKIPSYITPNNLFLSVSQLVNQATRRWNTQLLHKIFD 368
            VG G  I++W D WIP+    P     S + P+   L V  L++  +  WN  LL ++FD
Sbjct: 710  VGSGASISVWNDPWIPAQFPRPAKYGGSIVDPS---LKVKSLIDSRSNFWNIDLLKELFD 766

Query: 367  PTTVTHIEAIYLPRTDPQDKIYWNLTKKGNHIVKSMYCSLNPPTNHELK------TDINL 206
            P  V  I A+ +   + +D + W+ TK GN+ VKS Y +     N          T +  
Sbjct: 767  PEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLNEGTTLIGPDLTTLKA 826

Query: 205  AFWRNNNPPRHNLLAWKCYHNIMPTRAYLSTLFYISDKSCLLCKQSTESLHHILLDCSFT 26
              W+   PP+     W+     +P    L     + DK C+ C  S ES++H L  C   
Sbjct: 827  YIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHPA 886

Query: 25   RALW 14
            R +W
Sbjct: 887  RQIW 890


>gb|ABN07997.1| contains similarity to reverse trancriptase , related [Medicago
           truncatula]
          Length = 407

 Score = 92.4 bits (228), Expect = 4e-17
 Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 8/188 (4%)
 Frame = -2

Query: 544 WAVGLGIDINIWKDSWIPSLPEGKIPSYITPNNLFLSVSQLVNQATRRWNTQLLHKIFDP 365
           W +G G  INIW+D+W+P+    K+ +   PN+    V  L+N     WN  +L   F  
Sbjct: 204 WRIGDGGSINIWEDNWVPTYKGLKVMTTKGPNHFVNRVKDLINNQESLWNKVILEDQFIS 263

Query: 364 TTVTHIEAIYLPRTDPQDKIYWNLTKKGNHIVKSMYCSL--------NPPTNHELKTDIN 209
             +  I  I L  T   D + W     G + VKS Y +L        N  +    +T I 
Sbjct: 264 INIDQISHIPLVNTTNPDSLMWMHNPTGIYSVKSGYNTLRTWQTQQINNTSTSSDETLIW 323

Query: 208 LAFWRNNNPPRHNLLAWKCYHNIMPTRAYLSTLFYISDKSCLLCKQSTESLHHILLDCSF 29
              W  +  PRH +L W+  ++ +P R+ L          C  C   TE++ H+ + C  
Sbjct: 324 KKIWSLHTIPRHKVLLWRILNDSLPVRSSLRKRGIQCYPLCPRCHSKTETITHLFMSCPL 383

Query: 28  TRALWFNS 5
           ++ +WF S
Sbjct: 384 SKRVWFGS 391


>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1225

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 10/189 (5%)
 Frame = -2

Query: 538  VGLGIDINIWKDSWIPSLPEGKIPSYITPNNLFLSVSQLVNQATRRWNTQLLHKIFDPTT 359
            +G G+   +W+D WIPS P     S +   +  L V+ L++  T++W    L ++ DP+ 
Sbjct: 806  IGSGMLTRVWEDPWIPSFPPRPAKSILNIRDTHLYVNDLIDPVTKQWKLGRLQELVDPSD 865

Query: 358  VTHIEAIYLPRTDPQDKIYWNLTKKGNHIVKSMY----------CSLNPPTNHELKTDIN 209
            +  I  I   RT   D   W+ TK GN+ VKS Y          C L  P      + + 
Sbjct: 866  IPLILGIRPSRTYKSDDFSWSFTKSGNYTVKSGYWAARDLSRPTCDL--PFQGPSVSALQ 923

Query: 208  LAFWRNNNPPRHNLLAWKCYHNIMPTRAYLSTLFYISDKSCLLCKQSTESLHHILLDCSF 29
               W+     +     W+C    + T   L +    ++K C  C    ES++H+L  C  
Sbjct: 924  AQVWKIKTTRKFKHFEWQCLSGCLATNQRLFSRHIGTEKVCPRCGAEEESINHLLFLCPP 983

Query: 28   TRALWFNSP 2
            +R +W  SP
Sbjct: 984  SRQIWALSP 992


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score = 88.6 bits (218), Expect = 6e-16
 Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 7/184 (3%)
 Frame = -2

Query: 544  WAVGLGIDINIWKDSWIPSLPEGKIPSYITPNNLFLSVSQLVNQATRRWNTQLLHKIFDP 365
            W VG G  I +W+D+WI       +P+    +NL L V  L++ A   WN + + + F  
Sbjct: 927  WCVGSGERIRVWEDAWILGEGAHMVPTPQADSNLDLKVCDLIDVARGAWNIESVQQTFVE 986

Query: 364  TTVTHIEAIYLPRTDPQDKIYWNLTKKGNHIVKSMYC--SLNPPTNHEL-----KTDINL 206
                 + +I L R  P D  YW  ++ G   V+S Y    L P    +L     +T++  
Sbjct: 987  EEWELVLSIPLSRFLPDDHRYWWPSRNGIFSVRSCYWLGRLGPVRTWQLQHGERETELWR 1046

Query: 205  AFWRNNNPPRHNLLAWKCYHNIMPTRAYLSTLFYISDKSCLLCKQSTESLHHILLDCSFT 26
              W+   PP+ +   W+     +  +  L +     D +C +C    ES++H L DC+F 
Sbjct: 1047 RVWQLQGPPKLSHFLWRACKGSLAVKGRLFSRHISVDATCSVCGDPDESINHALFDCTFA 1106

Query: 25   RALW 14
            RA+W
Sbjct: 1107 RAIW 1110