BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027347
         (234 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containi...    97   1e-18
gb|ADE77505.1| unknown [Picea sitchensis]                              86   2e-15
gb|AFG66680.1| Pinus taeda anonymous locus 0_14992_02 genomic se...    80   1e-13
ref|XP_003597735.1| Pentatricopeptide repeat-containing protein ...    79   3e-13
ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containi...    78   7e-13

>ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 47/71 (66%), Positives = 56/71 (78%)
 Frame = +2

Query: 17  LLKQGKEMHNYVIKHGFESDIFVGSALIDMYANCGSTRDAGYIFEKMSDRDITIENSMVV 196
           LLKQGKEMHN+V+K G  SD+ VGSALI MYANCGS ++A  IFE  SD+DI + NSM+V
Sbjct: 349 LLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIV 408

Query: 197 GYTLNGDIDSA 229
           GY L GD +SA
Sbjct: 409 GYNLVGDFESA 419



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 27/71 (38%), Positives = 43/71 (60%)
 Frame = +2

Query: 20  LKQGKEMHNYVIKHGFESDIFVGSALIDMYANCGSTRDAGYIFEKMSDRDITIENSMVVG 199
           L+QGKE+H YV K G   ++ VG++LIDMY+ CG       +F++M  R++T  N+M+  
Sbjct: 451 LRQGKEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMISA 510

Query: 200 YTLNGDIDSAL 232
              +G  +  L
Sbjct: 511 CGSHGQGEKGL 521


>gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 38/71 (53%), Positives = 52/71 (73%)
 Frame = +2

Query: 20  LKQGKEMHNYVIKHGFESDIFVGSALIDMYANCGSTRDAGYIFEKMSDRDITIENSMVVG 199
           L+QGK+ HNY+IK GFESD+ V +AL+ MYA CGS  DAG++F+KMS+R     N+M+ G
Sbjct: 26  LEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITG 85

Query: 200 YTLNGDIDSAL 232
           +  N D+  AL
Sbjct: 86  HAQNRDMKKAL 96



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 30/65 (46%), Positives = 42/65 (64%)
 Frame = +2

Query: 20  LKQGKEMHNYVIKHGFESDIFVGSALIDMYANCGSTRDAGYIFEKMSDRDITIENSMVVG 199
           L+ G++ H YV++ GF  DI VGSAL+DMYA  GS  DA  +F+KM  R+    NS++ G
Sbjct: 158 LELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITG 217

Query: 200 YTLNG 214
              +G
Sbjct: 218 CAQHG 222


>gb|AFG66680.1| Pinus taeda anonymous locus 0_14992_02 genomic sequence
           gi|383167278|gb|AFG66681.1| Pinus taeda anonymous locus
           0_14992_02 genomic sequence gi|383167279|gb|AFG66682.1|
           Pinus taeda anonymous locus 0_14992_02 genomic sequence
           gi|383167280|gb|AFG66683.1| Pinus taeda anonymous locus
           0_14992_02 genomic sequence
          Length = 150

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 35/71 (49%), Positives = 51/71 (71%)
 Frame = +2

Query: 20  LKQGKEMHNYVIKHGFESDIFVGSALIDMYANCGSTRDAGYIFEKMSDRDITIENSMVVG 199
           L+QGKE+H+ + + G++SD++VGSAL+DMY  CGS  DA  +F+KM  RD+   NSM+ G
Sbjct: 53  LEQGKEIHHEINRSGYQSDVYVGSALVDMYVKCGSVEDARQVFDKMPRRDVISWNSMIGG 112

Query: 200 YTLNGDIDSAL 232
           Y  +G  + AL
Sbjct: 113 YATHGPPEEAL 123


>ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|87240430|gb|ABD32288.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355486783|gb|AES67986.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 620

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 35/69 (50%), Positives = 48/69 (69%)
 Frame = +2

Query: 26  QGKEMHNYVIKHGFESDIFVGSALIDMYANCGSTRDAGYIFEKMSDRDITIENSMVVGYT 205
           +G+ +H YVIK G+E D+FVG+ALIDMYA CG   DAG +F+K+  RD  + NSM+  Y 
Sbjct: 166 EGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYA 225

Query: 206 LNGDIDSAL 232
            NG  D ++
Sbjct: 226 QNGHPDESI 234



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 26/65 (40%), Positives = 45/65 (69%)
 Frame = +2

Query: 20  LKQGKEMHNYVIKHGFESDIFVGSALIDMYANCGSTRDAGYIFEKMSDRDITIENSMVVG 199
           L  G+E+H +  +HGF+S+  V +ALIDMYA CGS + A  +FE++ ++ +   N+++ G
Sbjct: 265 LPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITG 324

Query: 200 YTLNG 214
           Y ++G
Sbjct: 325 YAMHG 329


>ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449522468|ref|XP_004168248.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 34/71 (47%), Positives = 50/71 (70%)
 Frame = +2

Query: 20  LKQGKEMHNYVIKHGFESDIFVGSALIDMYANCGSTRDAGYIFEKMSDRDITIENSMVVG 199
           +++GK++H  VI+ G ESD+FVG+ALIDMYA CG    A  +F+K+ +RD+   NSM+  
Sbjct: 118 MEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLAT 177

Query: 200 YTLNGDIDSAL 232
           Y+ NG  D +L
Sbjct: 178 YSQNGQPDESL 188



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 32/72 (44%), Positives = 47/72 (65%)
 Frame = +2

Query: 17  LLKQGKEMHNYVIKHGFESDIFVGSALIDMYANCGSTRDAGYIFEKMSDRDITIENSMVV 196
           LL QGKE+H Y  +HGFES+  V +AL+DMYA  GS   A  +FE + ++ +   N+M+ 
Sbjct: 218 LLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMIT 277

Query: 197 GYTLNGDIDSAL 232
           GY ++G  + AL
Sbjct: 278 GYAMHGHANEAL 289