BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00027339
         (190 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD20832.1| sigma factor [Spinacia oleracea]                       69   4e-10
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...    67   1e-09
dbj|BAJ33825.1| unnamed protein product [Thellungiella halophila]      67   2e-09
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...    67   2e-09
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]    67   2e-09

>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 30/36 (83%), Positives = 34/36 (94%)
 Frame = -1

Query: 109 AGNMGVLKGAERFDHTRGYQFSTYVQYWIRKYVSGL 2
           AGN+G+L+GAERFDHTRGYQFSTYVQYWIRK +S L
Sbjct: 343 AGNIGILQGAERFDHTRGYQFSTYVQYWIRKAMSQL 378


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 560

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 29/34 (85%), Positives = 33/34 (97%)
 Frame = -1

Query: 109 AGNMGVLKGAERFDHTRGYQFSTYVQYWIRKYVS 8
           AGN+GVL+GAERFDHTRGY+FSTYVQYWIRK +S
Sbjct: 354 AGNLGVLEGAERFDHTRGYRFSTYVQYWIRKSMS 387


>dbj|BAJ33825.1| unnamed protein product [Thellungiella halophila]
          Length = 562

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 29/34 (85%), Positives = 33/34 (97%)
 Frame = -1

Query: 109 AGNMGVLKGAERFDHTRGYQFSTYVQYWIRKYVS 8
           AGN+GVL+GAERFDHTRGY+FSTYVQYWIRK +S
Sbjct: 355 AGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSMS 388


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|296081598|emb|CBI20603.3| unnamed protein product
           [Vitis vinifera]
          Length = 561

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 29/36 (80%), Positives = 34/36 (94%)
 Frame = -1

Query: 109 AGNMGVLKGAERFDHTRGYQFSTYVQYWIRKYVSGL 2
           AGN+GVL+GAERFDHT+GY+FSTYVQYWIRK +S L
Sbjct: 355 AGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTL 390


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 29/36 (80%), Positives = 34/36 (94%)
 Frame = -1

Query: 109 AGNMGVLKGAERFDHTRGYQFSTYVQYWIRKYVSGL 2
           AGN+GVL+GAERFDHT+GY+FSTYVQYWIRK +S L
Sbjct: 405 AGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTL 440